##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062340_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1277527 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.1549070978539 32.0 32.0 32.0 32.0 32.0 2 31.068937094871576 32.0 32.0 32.0 32.0 32.0 3 31.294477533547237 32.0 32.0 32.0 32.0 32.0 4 31.475549244751775 32.0 32.0 32.0 32.0 32.0 5 31.334809362150466 32.0 32.0 32.0 32.0 32.0 6 34.92566810721026 36.0 36.0 36.0 36.0 36.0 7 34.948838654682056 36.0 36.0 36.0 36.0 36.0 8 34.85915444448532 36.0 36.0 36.0 32.0 36.0 9 35.06856058619505 36.0 36.0 36.0 36.0 36.0 10 34.87165594151826 36.0 36.0 36.0 32.0 36.0 11 35.06987249584549 36.0 36.0 36.0 36.0 36.0 12 34.95551874833174 36.0 36.0 36.0 32.0 36.0 13 35.01728965415212 36.0 36.0 36.0 36.0 36.0 14 34.97229256211415 36.0 36.0 36.0 32.0 36.0 15 34.904530393486795 36.0 36.0 36.0 32.0 36.0 16 34.93950891057489 36.0 36.0 36.0 32.0 36.0 17 34.90744540037119 36.0 36.0 36.0 32.0 36.0 18 34.926693525851114 36.0 36.0 36.0 32.0 36.0 19 34.902516346034176 36.0 36.0 36.0 32.0 36.0 20 34.898809183680655 36.0 36.0 36.0 32.0 36.0 21 34.90516521372934 36.0 36.0 36.0 32.0 36.0 22 34.87985772512049 36.0 36.0 36.0 32.0 36.0 23 34.83466181145291 36.0 36.0 36.0 32.0 36.0 24 34.819036309995795 36.0 36.0 36.0 32.0 36.0 25 34.78385192641721 36.0 36.0 36.0 32.0 36.0 26 34.73149060646077 36.0 36.0 36.0 32.0 36.0 27 34.71387610594532 36.0 36.0 36.0 32.0 36.0 28 34.69354776846204 36.0 36.0 36.0 32.0 36.0 29 34.669535751494884 36.0 36.0 36.0 32.0 36.0 30 34.65079563876145 36.0 36.0 36.0 32.0 36.0 31 34.65188054733873 36.0 36.0 36.0 32.0 36.0 32 34.61521830849759 36.0 36.0 36.0 32.0 36.0 33 34.5978785575569 36.0 36.0 36.0 32.0 36.0 34 34.582359511775486 36.0 36.0 36.0 32.0 36.0 35 34.569265463665346 36.0 36.0 36.0 32.0 36.0 36 34.52380419357086 36.0 36.0 36.0 32.0 36.0 37 34.51705286854994 36.0 36.0 36.0 32.0 36.0 38 34.488222949495395 36.0 36.0 36.0 32.0 36.0 39 34.46793531565282 36.0 36.0 36.0 32.0 36.0 40 34.471715274902216 36.0 36.0 36.0 32.0 36.0 41 34.43594147129571 36.0 36.0 36.0 32.0 36.0 42 34.407227401064716 36.0 36.0 36.0 32.0 36.0 43 34.394207715375096 36.0 36.0 36.0 32.0 36.0 44 34.35377569319474 36.0 36.0 36.0 32.0 36.0 45 34.32159320311821 36.0 36.0 36.0 32.0 36.0 46 34.31948209313776 36.0 36.0 36.0 32.0 36.0 47 34.30408280999149 36.0 36.0 36.0 32.0 36.0 48 34.25467954884711 36.0 36.0 36.0 32.0 36.0 49 34.23250858885957 36.0 36.0 36.0 32.0 36.0 50 33.66017861070647 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 4.0 21 29.0 22 83.0 23 288.0 24 766.0 25 1851.0 26 3753.0 27 7401.0 28 12943.0 29 20896.0 30 31925.0 31 48267.0 32 75669.0 33 130855.0 34 280702.0 35 662092.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.845511779709184 18.588955710422855 12.059660269648637 26.505872240219325 2 16.05419736841075 20.6206129415826 37.159358392584146 26.165831297422503 3 18.327967480820305 24.253418529451135 28.975681846823893 28.44293214290467 4 12.483659823753097 16.279042461758117 36.48004032794636 34.75725738654243 5 14.624829553371125 36.505636675887615 33.41865449313752 15.450879277603743 6 33.98323632276185 36.06335380000689 16.667945181460386 13.285464695770882 7 30.010011530088992 30.618530958641188 21.034232544595927 18.337224966673894 8 27.73530422448997 33.533303014339424 19.499392185057538 19.232000576113066 9 27.523175635426885 14.097079748608051 18.82206794846606 39.557676667499 10 15.935083955172768 26.83927619533677 31.71189336898555 25.513746480504913 11 37.50574351853229 21.0182641932421 22.564298053974593 18.911694234251016 12 24.642923398096478 23.792217307344583 29.001813660298374 22.56304563426057 13 29.582153645284993 19.663224338898512 25.246041766631937 25.508580249184558 14 23.207963510751632 20.236597739225864 25.01371790968019 31.541720840342318 15 24.942799643373487 28.095609720968717 22.042430414386548 24.91916022127125 16 25.495116737258783 25.92931499686504 24.305709390095082 24.2698588757811 17 23.82564125846264 26.116395191647612 25.42740779646927 24.630555753420474 18 24.823741494308926 24.93418925783956 26.64209836660986 23.59997088124165 19 25.520556512699926 25.077513038863366 25.353123652181125 24.04880679625558 20 25.548657680033376 24.7283227673466 25.081974784094584 24.64104476852544 21 26.704249694918385 24.397136029218952 24.343438533980102 24.55517574188256 22 25.741530315993323 25.041505972085133 24.84409331466184 24.372870397259703 23 24.28911482888424 24.70460506901224 25.587560967400297 25.41871913470322 24 24.698656075370618 25.272499133090733 25.403455269438535 24.625389522100118 25 24.64636755231005 24.915481238361302 25.541299714213476 24.896851495115172 26 24.122856111847344 25.796793335874703 26.006260533045484 24.074090019232468 27 25.192970481250104 25.196258082999417 24.97293599274223 24.63783544300825 28 24.084579034337438 25.235083094134215 25.77338874246885 24.9069491290595 29 24.406529177074145 24.998532320647627 25.552884596568216 25.042053905710016 30 24.20700306138344 25.29097232387261 25.984656292978542 24.517368321765414 31 24.98303362668656 25.00902133575259 24.877282437083522 25.130662600477326 32 24.588443140536363 25.29245957228301 24.92041264098528 25.198684646195346 33 24.169039088802037 25.04823772804802 25.56055566731662 25.222167515833327 34 24.8321953273786 25.06107503011678 25.95498960100256 24.15174004150206 35 25.44682030203667 24.911645702987098 25.48940257231354 24.15213142266269 36 24.16786494532014 25.4007156013141 25.3689354510707 25.06248400229506 37 25.20205052417679 25.23007341527811 24.81184350702568 24.756032553519418 38 24.432360333675923 25.12573119785335 25.503648846560584 24.938259621910145 39 25.08314892757648 24.697560208120848 25.04823772804802 25.171053136254656 40 25.51742546341486 24.844641248286727 25.598284811201644 24.03964847709677 41 24.29201104947293 25.09950866009094 26.127901797770225 24.48057849266591 42 25.438679573895502 25.508893354113066 25.49175085927734 23.560676212714096 43 24.390404273256063 24.570909264540006 25.8262251991543 25.212461263049622 44 23.96356397946971 25.23539619906272 25.491907411741593 25.309132409725976 45 24.271267847959376 25.415901190346663 25.550771138300792 24.762059823393166 46 24.150957279180794 24.86757618429982 25.669985839829607 25.311480696689774 47 24.687619126640765 24.552984007383014 25.91608631363564 24.84331055234058 48 25.018727588536287 25.479618043297712 25.020527941875205 24.481126426290796 49 24.181250181013787 25.404707689152556 25.430851950682843 24.983190179150814 50 24.05248577916553 25.77800704016432 25.148039924009435 25.021467256660717 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 9.0 1 12.0 2 15.0 3 46.0 4 77.0 5 90.0 6 103.0 7 123.5 8 144.0 9 172.0 10 200.0 11 301.0 12 402.0 13 767.5 14 1133.0 15 1509.5 16 1886.0 17 2280.5 18 2675.0 19 3048.0 20 3421.0 21 4192.0 22 4963.0 23 5556.5 24 6150.0 25 7823.5 26 9497.0 27 12191.5 28 14886.0 29 17497.0 30 20108.0 31 22137.0 32 24166.0 33 28331.5 34 32497.0 35 37905.0 36 43313.0 37 49504.0 38 55695.0 39 58041.0 40 60387.0 41 64306.5 42 68226.0 43 68963.5 44 69701.0 45 75524.0 46 81347.0 47 86008.5 48 90670.0 49 93439.5 50 96209.0 51 92158.5 52 88108.0 53 86038.0 54 83968.0 55 85084.5 56 86201.0 57 84243.5 58 82286.0 59 74360.0 60 66434.0 61 58426.0 62 50418.0 63 44177.5 64 37937.0 65 32736.0 66 27535.0 67 23845.0 68 20155.0 69 18559.0 70 16963.0 71 13315.0 72 9667.0 73 8719.5 74 7772.0 75 5755.0 76 3738.0 77 3363.0 78 2988.0 79 2607.5 80 2227.0 81 1789.0 82 1351.0 83 1102.5 84 854.0 85 726.5 86 599.0 87 445.5 88 292.0 89 195.0 90 98.0 91 62.0 92 26.0 93 23.0 94 20.0 95 12.5 96 5.0 97 4.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.012602473372382735 2 0.003757259142076841 3 3.1310492850640336E-4 4 7.827623212660084E-5 5 7.827623212660084E-5 6 2.3482869637980256E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1277527.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.24721978206066 #Duplication Level Percentage of deduplicated Percentage of total 1 83.9717670626434 51.43037272773723 2 10.589619070524 12.971694532413688 3 2.5382653636185664 4.6638508977221536 4 0.9665680311615252 2.3679841855545436 5 0.49830620849922475 1.525993493535868 6 0.28065371022702346 1.0313555683755162 7 0.1795917078482878 0.7699644961133798 8 0.13900949280305078 0.6811155966000985 9 0.09388878455631434 0.5175384320512014 >10 0.5749779570900416 6.825894525630982 >50 0.07929660840181986 3.3669717061327034 >100 0.07984088047047508 9.998612093763146 >500 0.0066747867520163305 2.721588145740676 >1k 0.0015403354043114607 1.1270635986289887 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1303 0.1019939304609609 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1299 0.1016808255324545 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 7.827623212660085E-5 13 0.0 0.0 0.0 0.0 1.565524642532017E-4 14 0.0 0.0 0.0 0.0 1.565524642532017E-4 15 0.0 0.0 0.0 0.0 3.131049285064034E-4 16 0.0 0.0 0.0 7.827623212660085E-5 3.131049285064034E-4 17 0.0 0.0 0.0 7.827623212660085E-5 3.131049285064034E-4 18 0.0 0.0 0.0 1.565524642532017E-4 3.131049285064034E-4 19 0.0 0.0 0.0 1.565524642532017E-4 3.131049285064034E-4 20 0.0 0.0 0.0 1.565524642532017E-4 3.131049285064034E-4 21 0.0 0.0 0.0 1.565524642532017E-4 3.131049285064034E-4 22 0.0 0.0 0.0 3.131049285064034E-4 3.131049285064034E-4 23 0.0 0.0 0.0 6.262098570128068E-4 3.131049285064034E-4 24 0.0 0.0 0.0 0.0010958672497724119 3.131049285064034E-4 25 0.0 0.0 0.0 0.0011741434818990128 3.131049285064034E-4 26 0.0 0.0 0.0 0.0012524197140256136 3.131049285064034E-4 27 0.0 0.0 0.0 0.0018786295710384203 3.131049285064034E-4 28 0.0 0.0 0.0 0.004226916534836446 3.131049285064034E-4 29 0.0 0.0 0.0 0.009862805247951707 3.131049285064034E-4 30 0.0 0.0 0.0 0.020664925281422622 3.131049285064034E-4 31 0.0 0.0 0.0 0.055106467417127 3.131049285064034E-4 32 0.0 0.0 0.0 0.09447941217680722 3.131049285064034E-4 33 0.0 0.0 0.0 0.13620064390028547 3.131049285064034E-4 34 0.0 0.0 0.0 0.1853581176757908 4.6965739275960506E-4 35 0.0 0.0 0.0 0.2399949277001582 4.6965739275960506E-4 36 0.0 0.0 0.0 0.32163703780820285 4.6965739275960506E-4 37 0.0 0.0 0.0 0.4409300155691426 4.6965739275960506E-4 38 0.0 0.0 0.0 0.6041359595531053 4.6965739275960506E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGACG 585 0.0 21.811869 4 GTATCAA 1825 0.0 20.3757 1 TAGACCG 55 0.004483865 19.99991 5 TGAACCG 55 0.004483865 19.99991 5 ACCGTTA 55 0.004483865 19.99991 8 TGTAGGA 830 0.0 19.615139 2 AGGACGT 630 0.0 19.555468 5 GGACGTG 645 0.0 19.100689 6 GCGAGAA 440 0.0 18.999914 20 TAACGGC 225 0.0 18.577694 36 GCATATA 190 1.8189894E-12 18.529135 1 GTAGGAC 800 0.0 18.42492 3 TAAGGCG 60 0.0074125165 18.333252 5 GACGTGA 350 0.0 18.22849 7 ATAATAC 115 4.273448E-6 17.217316 3 TTAACGG 245 0.0 17.06115 35 CGGTCCA 460 0.0 16.739058 10 TTAGGAC 475 0.0 16.67361 3 AATCACG 370 0.0 16.648573 34 TATGGCG 740 0.0 16.648573 16 >>END_MODULE