##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062338_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2232696 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.23274507590823 32.0 32.0 32.0 32.0 32.0 2 31.393174888117326 32.0 32.0 32.0 32.0 32.0 3 31.498833697019208 32.0 32.0 32.0 32.0 32.0 4 31.61289759107375 32.0 32.0 32.0 32.0 32.0 5 31.533752467868442 32.0 32.0 32.0 32.0 32.0 6 35.143090684983534 36.0 36.0 36.0 36.0 36.0 7 35.164850476733065 36.0 36.0 36.0 36.0 36.0 8 35.10228306943713 36.0 36.0 36.0 36.0 36.0 9 35.22696327668433 36.0 36.0 36.0 36.0 36.0 10 35.10531035125248 36.0 36.0 36.0 36.0 36.0 11 35.24473192947002 36.0 36.0 36.0 36.0 36.0 12 35.15540181018822 36.0 36.0 36.0 36.0 36.0 13 35.186914385120055 36.0 36.0 36.0 36.0 36.0 14 35.14791265806003 36.0 36.0 36.0 36.0 36.0 15 35.10759279364499 36.0 36.0 36.0 36.0 36.0 16 35.12235835062185 36.0 36.0 36.0 36.0 36.0 17 35.097817616012215 36.0 36.0 36.0 36.0 36.0 18 35.10896736501521 36.0 36.0 36.0 36.0 36.0 19 35.07678698757019 36.0 36.0 36.0 36.0 36.0 20 35.05905013490417 36.0 36.0 36.0 36.0 36.0 21 35.03626154209977 36.0 36.0 36.0 36.0 36.0 22 35.0145698294797 36.0 36.0 36.0 36.0 36.0 23 34.968937553522736 36.0 36.0 36.0 36.0 36.0 24 34.947871541848954 36.0 36.0 36.0 36.0 36.0 25 34.9150076857754 36.0 36.0 36.0 32.0 36.0 26 34.86921193032997 36.0 36.0 36.0 32.0 36.0 27 34.83068003884093 36.0 36.0 36.0 32.0 36.0 28 34.79346852415197 36.0 36.0 36.0 32.0 36.0 29 34.76623911181818 36.0 36.0 36.0 32.0 36.0 30 34.740967422345 36.0 36.0 36.0 32.0 36.0 31 34.73315220701788 36.0 36.0 36.0 32.0 36.0 32 34.68532841013734 36.0 36.0 36.0 32.0 36.0 33 34.66543004511138 36.0 36.0 36.0 32.0 36.0 34 34.63907267267913 36.0 36.0 36.0 32.0 36.0 35 34.586430485834164 36.0 36.0 36.0 32.0 36.0 36 34.54778841364879 36.0 36.0 36.0 32.0 36.0 37 34.50193622418816 36.0 36.0 36.0 32.0 36.0 38 34.45281489284703 36.0 36.0 36.0 32.0 36.0 39 34.356134914919004 36.0 36.0 36.0 32.0 36.0 40 34.34793227559865 36.0 36.0 36.0 32.0 36.0 41 34.31800119675943 36.0 36.0 36.0 32.0 36.0 42 34.247745326726076 36.0 36.0 36.0 32.0 36.0 43 34.256343004152825 36.0 36.0 36.0 32.0 36.0 44 34.21154783275466 36.0 36.0 36.0 32.0 36.0 45 34.11540935263914 36.0 36.0 36.0 32.0 36.0 46 34.13301094282428 36.0 36.0 36.0 32.0 36.0 47 34.07844417690541 36.0 36.0 36.0 32.0 36.0 48 34.05372652613701 36.0 36.0 36.0 32.0 36.0 49 34.04491207042965 36.0 36.0 36.0 32.0 36.0 50 33.527445294836376 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 13.0 21 64.0 22 205.0 23 666.0 24 1750.0 25 4289.0 26 8971.0 27 17136.0 28 27569.0 29 40649.0 30 56840.0 31 79227.0 32 115537.0 33 179925.0 34 389477.0 35 1310377.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.768192679118094 17.831446087851656 12.26897705292261 26.131384180107638 2 15.06799922422253 20.427671964378735 38.81122404874319 25.693104762655544 3 18.917632136101968 24.74278658060563 28.35454626482356 27.985035018468846 4 12.042105244299368 16.39523785423061 36.31859491528384 35.244061986186175 5 13.834530092766773 37.39152128189417 33.66065062149079 15.113298003848264 6 33.85900973673331 35.4908609791197 17.254876316747726 13.395252967399255 7 29.751027457387842 30.41394798037888 21.1036791394798 18.731345422753478 8 27.591677322697457 34.354893973426734 19.58476191329313 18.46866679058268 9 27.43338098872395 14.660885315331779 18.55407095278533 39.35166274315895 10 15.77003765850792 27.315407023616288 31.85731510245909 25.057240215416698 11 37.068011050317644 20.826704575992434 22.828365348439732 19.27691902525019 12 25.14233912722556 23.4554995395701 29.546655702343717 21.855505630860627 13 30.433207207788254 20.0262373381777 25.149236617972175 24.391318836061874 14 23.301022620186536 20.441161716597335 25.19523481924991 31.06258084396622 15 24.80543701426437 28.797023867109537 22.693819489979827 23.703719628646265 16 24.951359253566093 25.732253741664785 25.785283800391994 23.53110320437713 17 23.329553150092984 26.44457642240592 26.524345455001487 23.701524972499616 18 24.294171709896915 24.552603668390145 28.622660675703276 22.530563946009668 19 25.49670891155805 25.48049532941341 25.411654788650136 23.611140970378415 20 25.360595441564815 24.588837889260336 26.604338432101816 23.446228237073026 21 25.81058952942989 24.667442410431157 24.491153296283954 25.030814763855 22 25.032740686595933 25.953286967863065 25.25825280288942 23.755719542651573 23 23.237735903141317 25.548932770068117 26.016887207214957 25.196444119575617 24 24.374881309412476 25.76692035100166 25.96090108102491 23.89729725856095 25 24.623325342993404 25.07623070942036 25.817800542483166 24.48264340510307 26 22.99444259316987 26.2359945106723 26.877729883513023 23.891833012644803 27 24.51775790344946 25.90952821163293 25.860484365090457 23.71222951982715 28 23.458903496042453 25.62973194738558 25.956690924335422 24.954673632236542 29 23.62059142847929 25.498500467596124 26.1257242365284 24.755183867396187 30 23.725128723301335 25.47494150569536 26.736958367820783 24.06297140318252 31 24.60554414931545 25.027007707274073 25.55829365036709 24.809154493043387 32 23.66972485282367 26.107719098345676 25.767950495723557 24.454605553107093 33 23.274373224120076 25.641735372840728 26.599187708492334 24.484703694546862 34 23.746896129164025 26.101448652212394 26.873788460229246 23.277866758394335 35 24.658439841339796 25.762710194312167 26.277334666251022 23.30151529809701 36 23.398617635361017 26.208897225596317 26.413896025253774 23.97858911378889 37 24.658350263537894 25.87423455768273 25.390335271796964 24.07707990698241 38 23.906299827652308 26.336769537814376 25.456443689602164 24.30048694493115 39 24.685089237406256 25.112912819300075 25.73821066549141 24.46378727780226 40 25.47879335117723 25.406638431743506 25.794868625195726 23.319699591883534 41 23.955478040897642 25.273122718005496 26.938194899798273 23.833204341298593 42 25.147041961825522 26.55605599687553 25.909438633831027 22.387463407467923 43 23.863212904936454 25.381511858309413 26.197744789259264 24.55753044749487 44 23.34917068870997 25.99453754563989 26.294757548721364 24.36153421692877 45 23.83253250778431 26.23491957704945 25.74246561108185 24.190082304084388 46 23.497543101537023 25.131892293297824 26.452718757124245 24.91784584804091 47 24.71469470093555 24.95525588794892 26.51641781953298 23.813631591582553 48 24.097324490212728 26.567969844528765 25.034218720327356 24.30048694493115 49 23.878261975656336 25.56895340879367 26.32942415805824 24.22336045749175 50 23.317997613647357 27.431992532794435 24.72132345827645 24.528686395281756 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 30.0 1 38.0 2 46.0 3 153.5 4 261.0 5 290.0 6 319.0 7 325.5 8 332.0 9 439.0 10 546.0 11 826.5 12 1107.0 13 2013.5 14 2920.0 15 4046.0 16 5172.0 17 6139.5 18 7107.0 19 7740.0 20 8373.0 21 9273.5 22 10174.0 23 11273.0 24 12372.0 25 13629.5 26 14887.0 27 19492.0 28 24097.0 29 30208.0 30 36319.0 31 43737.0 32 51155.0 33 61634.0 34 72113.0 35 83751.5 36 95390.0 37 102920.5 38 110451.0 39 111298.0 40 112145.0 41 115643.0 42 119141.0 43 121363.5 44 123586.0 45 136372.5 46 149159.0 47 159004.5 48 168850.0 49 168813.5 50 168777.0 51 156709.5 52 144642.0 53 139277.5 54 133913.0 55 133990.5 56 134068.0 57 130280.0 58 126492.0 59 115198.5 60 103905.0 61 92429.5 62 80954.0 63 70707.5 64 60461.0 65 51994.5 66 43528.0 67 38884.0 68 34240.0 69 31338.0 70 28436.0 71 22349.0 72 16262.0 73 14407.5 74 12553.0 75 9107.0 76 5661.0 77 5195.0 78 4729.0 79 4007.0 80 3285.0 81 2608.5 82 1932.0 83 1640.0 84 1348.0 85 1118.5 86 889.0 87 637.5 88 386.0 89 239.5 90 93.0 91 70.0 92 47.0 93 35.5 94 24.0 95 16.5 96 9.0 97 7.0 98 5.0 99 5.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015317804125595245 2 0.004344523392347189 3 7.614113161845589E-4 4 2.239445047601644E-4 5 0.0 6 7.614113161845589E-4 7 0.0 8 4.478890095203287E-5 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.3436670285609862E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2232696.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.34649081142419 #Duplication Level Percentage of deduplicated Percentage of total 1 72.60438609402654 35.82771671257975 2 15.353083751579295 15.152416125486672 3 5.3697080800416 7.949287512954091 4 2.395019409854959 4.727432132063612 5 1.255008910584413 3.0965142837204613 6 0.7117367655996333 2.107302705828905 7 0.4696966990462735 1.6224518690550245 8 0.33267264031268523 1.3132981910721715 9 0.23211678763373295 1.0308734035330773 >10 1.0999852250222046 9.661331800144913 >50 0.08436921316592101 2.9257502994439157 >100 0.07842018811933425 8.263241332553518 >500 0.009410676863571502 3.192210855491847 >1k 0.004385558150013877 3.1301727760720794 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 3764 0.16858542318345177 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 3392 0.15192395202929554 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.957780190406576E-5 2 0.0 0.0 0.0 0.0 8.957780190406576E-5 3 0.0 0.0 0.0 0.0 8.957780190406576E-5 4 0.0 0.0 0.0 0.0 8.957780190406576E-5 5 0.0 0.0 0.0 0.0 8.957780190406576E-5 6 0.0 0.0 0.0 0.0 8.957780190406576E-5 7 0.0 0.0 0.0 0.0 8.957780190406576E-5 8 0.0 0.0 0.0 0.0 8.957780190406576E-5 9 0.0 0.0 0.0 0.0 8.957780190406576E-5 10 0.0 0.0 0.0 0.0 8.957780190406576E-5 11 0.0 0.0 0.0 0.0 8.957780190406576E-5 12 0.0 0.0 0.0 0.0 1.7915560380813152E-4 13 0.0 0.0 0.0 0.0 1.7915560380813152E-4 14 0.0 0.0 0.0 1.7915560380813152E-4 1.7915560380813152E-4 15 0.0 0.0 0.0 2.687334057121973E-4 4.478890095203288E-4 16 0.0 0.0 0.0 3.1352230666423014E-4 4.478890095203288E-4 17 0.0 0.0 0.0 5.822557123764274E-4 4.478890095203288E-4 18 0.0 0.0 0.0 8.062002171365918E-4 5.374668114243946E-4 19 0.0 0.0 0.0 8.957780190406576E-4 5.822557123764274E-4 20 0.0 0.0 0.0 0.0012540892266569206 5.822557123764274E-4 21 0.0 0.0 0.0 0.001836344939033348 6.270446133284603E-4 22 0.0 0.0 0.0 0.0027769118590260386 6.270446133284603E-4 23 0.0 0.0 0.0 0.004075789986634992 7.166224152325261E-4 24 0.0 0.0 0.0 0.0061360794304285045 7.166224152325261E-4 25 0.0 0.0 0.0 0.008285946676126083 7.166224152325261E-4 26 0.0 0.0 0.0 0.009763980407543168 7.614113161845589E-4 27 0.0 0.0 0.0 0.011600325346576516 7.614113161845589E-4 28 0.0 0.0 0.0 0.016706260055108262 8.062002171365918E-4 29 0.0 0.0 0.0 0.023155861792201 8.062002171365918E-4 30 0.0 0.0 0.0 0.03654774317685883 8.062002171365918E-4 31 0.0 0.0 0.0 0.06512306198425581 8.062002171365918E-4 32 0.0 0.0 0.0 0.10158122735921057 8.062002171365918E-4 33 0.0 0.0 0.0 0.13369486934181815 8.062002171365918E-4 34 0.0 0.0 0.0 0.1760203807414892 8.509891180886247E-4 35 0.0 0.0 0.0 0.22116759290113835 8.509891180886247E-4 36 0.0 0.0 0.0 0.2849917767577852 8.509891180886247E-4 37 0.0 0.0 0.0 0.37940677996467054 8.509891180886247E-4 38 0.0 0.0 0.0 0.5018148462665764 9.405669199926904E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTAGGA 2550 0.0 22.087511 2 GTAGGAC 2500 0.0 21.472723 3 CTGTAGG 2570 0.0 21.320189 1 TTAGGAC 1375 0.0 21.120708 3 TAGGACG 2115 0.0 20.491957 4 CGCAATA 530 0.0 20.339394 36 GCGAGAA 1715 0.0 19.754879 20 AGGACCT 2070 0.0 19.449059 5 AGGACGT 2210 0.0 19.312002 5 GGACGTG 2155 0.0 18.8861 6 TATGGCG 2885 0.0 18.835144 16 GTCCTAC 2290 0.0 18.834124 1 ATCACGG 1450 0.0 18.813581 35 TAGGACC 1910 0.0 18.77508 4 AATCACG 1490 0.0 18.603819 34 GACGTGA 1255 0.0 18.40617 7 TAGGACA 1040 0.0 18.40405 4 GGCGAGA 1795 0.0 18.384195 19 GATTTCG 1260 0.0 18.333538 41 GGACCTG 2130 0.0 18.074915 6 >>END_MODULE