##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062335_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1869294 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.24994891119321 32.0 32.0 32.0 32.0 32.0 2 31.38467945652209 32.0 32.0 32.0 32.0 32.0 3 31.486071746873417 32.0 32.0 32.0 32.0 32.0 4 31.595437635813308 32.0 32.0 32.0 32.0 32.0 5 31.522308957285478 32.0 32.0 32.0 32.0 32.0 6 35.11545642365513 36.0 36.0 36.0 36.0 36.0 7 35.13272604523419 36.0 36.0 36.0 36.0 36.0 8 35.07693546333535 36.0 36.0 36.0 36.0 36.0 9 35.220573114769536 36.0 36.0 36.0 36.0 36.0 10 35.0745388365875 36.0 36.0 36.0 36.0 36.0 11 35.21624581259021 36.0 36.0 36.0 36.0 36.0 12 35.130012721380375 36.0 36.0 36.0 36.0 36.0 13 35.170854343939475 36.0 36.0 36.0 36.0 36.0 14 35.13470112245586 36.0 36.0 36.0 36.0 36.0 15 35.09171804970219 36.0 36.0 36.0 36.0 36.0 16 35.11331122873128 36.0 36.0 36.0 36.0 36.0 17 35.08551089341751 36.0 36.0 36.0 36.0 36.0 18 35.091184693258526 36.0 36.0 36.0 36.0 36.0 19 35.07949311344283 36.0 36.0 36.0 36.0 36.0 20 35.067113573359784 36.0 36.0 36.0 36.0 36.0 21 35.06021096734917 36.0 36.0 36.0 36.0 36.0 22 35.03937208379206 36.0 36.0 36.0 36.0 36.0 23 34.99576310628505 36.0 36.0 36.0 36.0 36.0 24 34.98665592464321 36.0 36.0 36.0 36.0 36.0 25 34.95400135024239 36.0 36.0 36.0 32.0 36.0 26 34.91006497640286 36.0 36.0 36.0 32.0 36.0 27 34.88361327859609 36.0 36.0 36.0 32.0 36.0 28 34.87203778538849 36.0 36.0 36.0 32.0 36.0 29 34.842119003217256 36.0 36.0 36.0 32.0 36.0 30 34.82961695699018 36.0 36.0 36.0 32.0 36.0 31 34.82218259941989 36.0 36.0 36.0 32.0 36.0 32 34.783732788956684 36.0 36.0 36.0 32.0 36.0 33 34.76030576249643 36.0 36.0 36.0 32.0 36.0 34 34.74908334376508 36.0 36.0 36.0 32.0 36.0 35 34.71273165162891 36.0 36.0 36.0 32.0 36.0 36 34.68077466679934 36.0 36.0 36.0 32.0 36.0 37 34.664149138658765 36.0 36.0 36.0 32.0 36.0 38 34.633659017789604 36.0 36.0 36.0 32.0 36.0 39 34.59666965175087 36.0 36.0 36.0 32.0 36.0 40 34.584186329170265 36.0 36.0 36.0 32.0 36.0 41 34.56079514511896 36.0 36.0 36.0 32.0 36.0 42 34.520539305213624 36.0 36.0 36.0 32.0 36.0 43 34.51174454098713 36.0 36.0 36.0 32.0 36.0 44 34.48944307316024 36.0 36.0 36.0 32.0 36.0 45 34.430660987517214 36.0 36.0 36.0 32.0 36.0 46 34.438688082238535 36.0 36.0 36.0 32.0 36.0 47 34.402807156070686 36.0 36.0 36.0 32.0 36.0 48 34.36732317120795 36.0 36.0 36.0 32.0 36.0 49 34.35273424084173 36.0 36.0 36.0 32.0 36.0 50 33.83931313105376 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 10.0 21 43.0 22 149.0 23 450.0 24 1229.0 25 2865.0 26 6031.0 27 11537.0 28 19280.0 29 29452.0 30 42635.0 31 61276.0 32 90727.0 33 147865.0 34 325178.0 35 1130566.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.329511327174245 18.239476597390798 12.041727104479879 26.389284970955075 2 15.593752056335708 20.715880341724876 37.490336893992854 26.200030707946564 3 18.0705211947689 24.844619484914528 28.987921565606474 28.0969377547101 4 12.292735587984964 16.486304165590056 36.36640844041939 34.85455180600559 5 14.030751716958381 37.117970741895064 33.94458014630122 14.906697394845327 6 33.633537083142976 35.81923793362813 17.222351207894352 13.32487377533454 7 29.498746317457993 30.83615035203149 21.541834265682265 18.123269064828254 8 27.731821603140865 33.61072876215767 19.815994603307242 18.841455031394222 9 27.30132338733233 14.540462869939134 18.79570575843072 39.36250798429782 10 15.482208791126489 27.52680958693496 32.4012167160436 24.589764905894953 11 36.55069775005965 21.345652422786358 22.869222283921093 19.234427543232897 12 24.18084046704264 24.005373151574872 29.55976962425386 22.25401675712863 13 29.545860629735078 20.14338033503558 25.386536307290346 24.924222727938997 14 23.160134253894785 19.894248844751015 25.727627649797196 31.217989251557004 15 24.85906443823176 27.798088476184056 22.815030701430594 24.52781638415359 16 25.227866777510656 25.97895248152511 24.653746280681368 24.139434460282867 17 23.62148490285637 26.150354090902766 26.09252477138428 24.135636234856584 18 24.243698423041 25.200048788473083 27.135806352558774 23.420446435927147 19 25.095142872121773 25.66214838329337 25.740520217793456 23.502188526791397 20 25.11622034843101 24.921815401964594 26.014206433016955 23.94775781658744 21 25.806052980430046 24.806584731989727 24.903466228426346 24.483896059153885 22 24.95958367169637 25.350372921541503 25.378351398977365 24.311692007784757 23 23.971242618871084 25.147676074496573 25.76603787312215 25.11504343351019 24 24.23225025062938 25.625396540084118 25.669370361216586 24.47298284806991 25 24.60367390041374 24.981891559059196 25.769461625619083 24.64497291490798 26 23.866336702519774 25.54215655750246 26.204064208198393 24.387442531779378 27 24.707830870906342 25.749935537160017 25.407292806802996 24.13494078513064 28 24.113167859095466 25.178864319898313 25.923423495715497 24.784544325290724 29 24.14237674758492 25.567888197362215 25.914061672481697 24.375673382571176 30 24.335604779130517 25.347805107168803 26.14569992735225 24.17089018634843 31 24.449926014848387 25.09883410528253 25.54745267464615 24.903787205222937 32 24.024096798042468 25.662415863957193 25.501285512070332 24.812201825930003 33 23.892924280503763 25.346200223185868 25.94075624273121 24.820119253579158 34 24.303721084002838 25.441476835639556 26.31544315661421 23.939358923743402 35 24.972743720356455 25.327904545780385 25.739450295138166 23.959901438724994 36 24.123385620453497 25.60223271459706 25.750577490753194 24.523804174196247 37 24.841517706684986 25.344755827601222 25.420131878666492 24.3935945870473 38 24.139487956415632 25.558954343190532 25.66947735348212 24.63208034691172 39 24.42617373190092 25.327904545780385 25.482080400407852 24.76384132191084 40 24.947975010886463 25.209945573034524 25.85163168554545 23.99044773053356 41 24.053840647859566 25.34593274252204 26.189085291024313 24.41114131859408 42 24.80016519605798 25.711525313835065 25.729553510576718 23.758755979530243 43 24.093213801574283 25.078987040026878 25.903950903389195 24.923848255009645 44 23.874896083762103 25.405366946023474 26.030522753510148 24.689214216704276 45 24.072403805928868 25.496952325316403 25.911868331038352 24.51877553771638 46 24.057478384887556 25.095035879856248 26.0453946784187 24.8020910568375 47 24.38722854724832 24.973546162347922 26.276123499032256 24.363101791371502 48 24.35357947973941 26.015383347937775 25.370701451992034 24.26033572033078 49 23.792244558640856 25.386482811157578 26.128955637796942 24.69231699240462 50 23.509784977643967 26.19234855512295 25.521988515450218 24.775877951782867 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 70.0 1 59.5 2 49.0 3 187.0 4 325.0 5 341.0 6 357.0 7 342.5 8 328.0 9 421.0 10 514.0 11 774.0 12 1034.0 13 1773.0 14 2512.0 15 3294.0 16 4076.0 17 4830.0 18 5584.0 19 6264.0 20 6944.0 21 8061.5 22 9179.0 23 10199.0 24 11219.0 25 13321.0 26 15423.0 27 19468.0 28 23513.0 29 27024.5 30 30536.0 31 33933.0 32 37330.0 33 43186.0 34 49042.0 35 56222.5 36 63403.0 37 72045.0 38 80687.0 39 84709.5 40 88732.0 41 95495.5 42 102259.0 43 104524.0 44 106789.0 45 116579.0 46 126369.0 47 132219.5 48 138070.0 49 138817.0 50 139564.0 51 134594.5 52 129625.0 53 126813.0 54 124001.0 55 122624.0 56 121247.0 57 117061.0 58 112875.0 59 102983.5 60 93092.0 61 82164.5 62 71237.0 63 61746.0 64 52255.0 65 44748.0 66 37241.0 67 32075.5 68 26910.0 69 23961.0 70 21012.0 71 16562.5 72 12113.0 73 10668.5 74 9224.0 75 7052.5 76 4881.0 77 4309.0 78 3737.0 79 3148.0 80 2559.0 81 2015.5 82 1472.0 83 1199.5 84 927.0 85 759.0 86 591.0 87 426.0 88 261.0 89 171.5 90 82.0 91 54.0 92 26.0 93 18.5 94 11.0 95 6.5 96 2.0 97 3.5 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015674366900016796 2 0.0037982254262839336 3 6.419535931747493E-4 4 1.6048839829368734E-4 5 0.0 6 4.2796906211649955E-4 7 5.3496132764562443E-5 8 5.3496132764562443E-5 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1869294.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.02249895897036 #Duplication Level Percentage of deduplicated Percentage of total 1 80.61927368149559 49.195895443020106 2 12.203643827893723 14.893936855665796 3 3.3675059445448374 6.164808839859415 4 1.3185726298827714 3.218503877373929 5 0.6812900022172135 2.0787009225528412 6 0.37670769374503527 1.3792586909635525 7 0.26561448564859935 1.1345921771785368 8 0.19517338046755156 0.9527973925119911 9 0.1439212495073182 0.7904190868410633 >10 0.7007893854973933 7.790663045594466 >50 0.06305364029831831 2.707644062879536 >100 0.05942214391991134 7.369349548053606 >500 0.004237418847744923 1.7372124390082098 >1k 7.945160339521728E-4 0.5862176184968785 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 5.349613276456245E-5 5.349613276456245E-5 6 0.0 0.0 0.0 5.349613276456245E-5 1.6048839829368734E-4 7 0.0 0.0 0.0 5.349613276456245E-5 1.6048839829368734E-4 8 0.0 0.0 0.0 5.349613276456245E-5 1.6048839829368734E-4 9 0.0 0.0 0.0 5.349613276456245E-5 1.6048839829368734E-4 10 5.349613276456245E-5 0.0 0.0 5.349613276456245E-5 1.6048839829368734E-4 11 5.349613276456245E-5 0.0 0.0 1.069922655291249E-4 1.6048839829368734E-4 12 5.349613276456245E-5 0.0 0.0 1.069922655291249E-4 1.6048839829368734E-4 13 5.349613276456245E-5 0.0 0.0 1.069922655291249E-4 1.6048839829368734E-4 14 5.349613276456245E-5 0.0 0.0 1.069922655291249E-4 1.6048839829368734E-4 15 5.349613276456245E-5 0.0 0.0 1.6048839829368734E-4 3.209767965873747E-4 16 5.349613276456245E-5 0.0 0.0 3.209767965873747E-4 3.209767965873747E-4 17 5.349613276456245E-5 0.0 0.0 3.209767965873747E-4 3.209767965873747E-4 18 5.349613276456245E-5 0.0 0.0 3.209767965873747E-4 3.7447292935193714E-4 19 5.349613276456245E-5 0.0 0.0 3.7447292935193714E-4 3.7447292935193714E-4 20 5.349613276456245E-5 0.0 0.0 5.88457460410187E-4 4.279690621164996E-4 21 5.349613276456245E-5 0.0 0.0 7.489458587038743E-4 4.279690621164996E-4 22 5.349613276456245E-5 0.0 0.0 0.001176914920820374 4.8146519488106207E-4 23 5.349613276456245E-5 0.0 0.0 0.002246837576111623 4.8146519488106207E-4 24 1.069922655291249E-4 0.0 0.0 0.003905217691813059 4.8146519488106207E-4 25 1.069922655291249E-4 0.0 0.0 0.00502863647986887 4.8146519488106207E-4 26 1.069922655291249E-4 0.0 0.0 0.006045063002395557 5.349613276456245E-4 27 1.069922655291249E-4 0.0 0.0 0.008559381242329992 5.349613276456245E-4 28 1.069922655291249E-4 0.0 0.0 0.014443955846431862 5.349613276456245E-4 29 1.069922655291249E-4 0.0 0.0 0.023270817752584664 5.349613276456245E-4 30 1.069922655291249E-4 0.0 0.0 0.042475929415062584 5.349613276456245E-4 31 1.6048839829368734E-4 0.0 0.0 0.0816350985987223 5.88457460410187E-4 32 1.6048839829368734E-4 0.0 0.0 0.12839071863494989 5.88457460410187E-4 33 1.6048839829368734E-4 0.0 0.0 0.17589528452988135 5.88457460410187E-4 34 1.6048839829368734E-4 0.0 0.0 0.23211972006543646 6.419535931747493E-4 35 1.6048839829368734E-4 0.0 0.0 0.2932123036825668 6.419535931747493E-4 36 1.6048839829368734E-4 0.0 0.0 0.3848511791082623 6.419535931747493E-4 37 1.6048839829368734E-4 0.0 0.0 0.524636574022064 6.419535931747493E-4 38 1.6048839829368734E-4 0.0 0.0 0.7064699292888117 6.419535931747493E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATAT 180 1.4551915E-11 18.339968 1 TAGCGTG 60 0.007414125 18.333097 5 TACGTAC 60 0.007414125 18.333097 27 TAGGACG 735 0.0 17.66011 4 CGCAATA 405 0.0 16.83929 36 GTATTAG 450 0.0 16.628237 1 GTCCTAA 535 0.0 16.45455 1 GTCCTAC 920 0.0 16.266754 1 CGTCGTA 325 0.0 16.245947 10 ACCGTCG 340 0.0 16.176264 8 CGTATAC 110 5.6232082E-5 16.000223 3 CAATACG 415 0.0 15.903411 38 ATACCGT 335 0.0 15.760993 6 CCGTCGT 350 0.0 15.714086 9 CGAATGC 420 0.0 15.714085 43 AATACGA 420 0.0 15.714085 39 CTAGCGG 435 0.0 15.67796 29 ATACGAT 85 0.0029810097 15.529213 6 TCTAGCG 440 0.0 15.499803 28 GTATAGT 200 1.2714736E-9 15.405572 1 >>END_MODULE