##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062329_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 225228 Sequences flagged as poor quality 0 Sequence length 25 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.01270712344824 32.0 32.0 32.0 32.0 32.0 2 30.830935762871402 32.0 32.0 32.0 32.0 32.0 3 30.850520361589144 32.0 32.0 32.0 32.0 32.0 4 30.777532100804518 32.0 32.0 32.0 32.0 32.0 5 30.85709148063296 32.0 32.0 32.0 32.0 32.0 6 34.39894684497487 36.0 36.0 36.0 32.0 36.0 7 34.30447368888415 36.0 36.0 36.0 32.0 36.0 8 34.23670680377218 36.0 36.0 36.0 32.0 36.0 9 34.21658941161845 36.0 36.0 36.0 32.0 36.0 10 34.16606727405119 36.0 36.0 36.0 32.0 36.0 11 34.35135507130552 36.0 36.0 36.0 32.0 36.0 12 34.255141456657256 36.0 36.0 36.0 32.0 36.0 13 34.23862486014173 36.0 36.0 36.0 32.0 36.0 14 34.19220967197684 36.0 36.0 36.0 32.0 36.0 15 34.1901628571936 36.0 36.0 36.0 32.0 36.0 16 34.17751345303426 36.0 36.0 36.0 32.0 36.0 17 34.12182765908324 36.0 36.0 36.0 32.0 36.0 18 34.11565613511642 36.0 36.0 36.0 32.0 36.0 19 34.0986955440709 36.0 36.0 36.0 32.0 36.0 20 34.04082529703234 36.0 36.0 36.0 32.0 36.0 21 34.00666879784041 36.0 36.0 36.0 32.0 36.0 22 33.95816683538459 36.0 36.0 36.0 32.0 36.0 23 33.96508427016179 36.0 36.0 36.0 32.0 36.0 24 33.929138473014014 36.0 36.0 36.0 32.0 36.0 25 33.502002415330246 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 4 5.0 5 19.0 6 55.0 7 8.0 8 31.0 9 38.0 10 15.0 11 3.0 12 12.0 13 13.0 14 95.0 15 142.0 16 182.0 17 276.0 18 337.0 19 471.0 20 559.0 21 746.0 22 956.0 23 1215.0 24 1595.0 25 1926.0 26 2504.0 27 3067.0 28 4039.0 29 5288.0 30 6847.0 31 9523.0 32 13722.0 33 19722.0 34 45183.0 35 106634.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.523935957660306 17.172972924973138 11.500892436930018 24.80219868043654 2 15.027505583256003 20.874051512474082 39.30834225026307 24.790100654006846 3 19.24777778764441 26.283821583653754 28.213882944242673 26.254517684459167 4 12.23612578929139 16.05491958330743 36.25722684523228 35.451727782168895 5 12.940162740290658 38.102281206694386 33.98047471840244 14.977081334612516 6 32.14845815173689 36.023848556336 17.756689635563138 14.071003656363985 7 27.70181973348505 31.668429802025088 21.904808470161527 18.724941994328333 8 27.037791033630555 33.68433685670344 20.16588583569657 19.111986273969436 9 27.628391203652253 14.185822179349831 19.353920971563454 38.83186564543446 10 15.165055018339446 28.34856063132155 33.158608425030565 23.327775925308437 11 34.64428634948866 22.45620275678079 23.277456647398846 19.622054246331704 12 24.76180737407913 24.664440719712967 30.49843724296759 20.07531466324031 13 30.119110605245492 21.28340676782991 25.23197446169031 23.365508165234285 14 22.794820389493196 20.494845727443668 27.784618530487776 28.92571535257536 15 24.095523078222747 28.004659662352328 24.88562040647551 23.014196852949414 16 22.426416654441674 27.11325678264851 27.22572672027882 23.234599842630995 17 21.865038966119705 26.73880474261911 28.100062683660905 23.296093607600284 18 22.08146083647824 25.362830992990084 30.577373570345873 21.978334600185807 19 23.686666666666667 25.404444444444447 29.284444444444446 21.624444444444443 20 24.244269245469173 25.019332130445214 29.284400081772688 21.45199854231292 21 23.63105475780969 25.018110386695643 28.559746499028925 22.791088356465742 22 23.682023245994177 25.9523968264551 27.908527235149013 22.457052692401717 23 21.895413219100774 26.486637812280595 29.025320168149378 22.592628800469253 24 22.678428584125857 26.104790685272423 29.21295884810239 22.003821882499334 25 22.32186901434114 25.457632090019867 29.547100885710858 22.67339800992814 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 372.0 1 372.0 2 397.0 3 422.0 4 422.0 5 422.0 6 1108.5 7 1795.0 8 1795.0 9 1795.0 10 1698.5 11 1602.0 12 1602.0 13 1602.0 14 1353.0 15 1104.0 16 1104.0 17 1104.0 18 1836.0 19 2568.0 20 2568.0 21 2568.0 22 3724.5 23 4881.0 24 4881.0 25 4881.0 26 7066.0 27 9251.0 28 9251.0 29 9251.0 30 11654.0 31 14057.0 32 14057.0 33 14057.0 34 14981.5 35 15906.0 36 15906.0 37 15906.0 38 17622.0 39 19338.0 40 19338.0 41 19338.0 42 21709.5 43 24081.0 44 24081.0 45 24081.0 46 28048.5 47 32016.0 48 32016.0 49 32016.0 50 30805.5 51 29595.0 52 29595.0 53 29595.0 54 26497.5 55 23400.0 56 23400.0 57 23400.0 58 20714.0 59 18028.0 60 18028.0 61 18028.0 62 15410.0 63 12792.0 64 12792.0 65 12792.0 66 10203.0 67 7614.0 68 7614.0 69 7614.0 70 5662.0 71 3710.0 72 3710.0 73 3710.0 74 2623.0 75 1536.0 76 1536.0 77 1536.0 78 1081.5 79 627.0 80 627.0 81 627.0 82 460.0 83 293.0 84 293.0 85 293.0 86 202.5 87 112.0 88 112.0 89 112.0 90 70.5 91 29.0 92 29.0 93 29.0 94 21.5 95 14.0 96 14.0 97 14.0 98 49.5 99 85.0 100 85.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 8.879890599747812E-4 2 4.439945299873906E-4 3 8.879890599747812E-4 4 0.011543857779672154 5 0.03729554051894081 6 0.06260322872822206 7 0.11099863249684765 8 0.1127746106167972 9 0.12032251762658283 10 0.13453034258617935 11 0.1456302058358641 12 0.1354183316461541 13 0.13808229882607848 14 0.11943452856660805 15 0.1416342550659776 16 0.12387447386648195 17 0.12831441916635586 18 0.11588257232670893 19 0.10123075283712504 20 0.09501482941730158 21 0.09723480206723853 22 0.1078906707869359 23 0.08435896069760421 24 0.09235086223737723 25 0.0936828458273394 >>END_MODULE >>Sequence Length Distribution pass #Length Count 25 225228.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.943106202632414 #Duplication Level Percentage of deduplicated Percentage of total 1 77.44754139622576 49.52236364631634 2 14.741074437918245 18.851801766494326 3 4.255222012148161 8.162763391157075 4 1.5772392273156637 4.034143016768135 5 0.7387533533905709 2.361909206670205 6 0.3570539229990744 1.369868215103781 7 0.20054333919465064 0.8976354825447859 8 0.1308391258364624 0.6693008095056403 9 0.09323921575005334 0.5365804567460236 >10 0.39587772293335616 4.559552224800745 >50 0.030612387074146503 1.366656780426409 >100 0.025742234585077742 3.2253455918266485 >500 0.004174416419201797 2.018399027602414 >1k 0.0020872082096008984 2.4236803840374592 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTT 2457 1.0908945601790185 No Hit TATCAACGCAGAGTACTTTTTTTTT 1568 0.6961834230202284 No Hit GTACTTTTTTTTTTTTTTTTTTTTT 1423 0.6318042161720567 No Hit GAGTACTTTTTTTTTTTTTTTTTTT 950 0.42179480348802106 No Hit GGTATCAACGCAGAGTACTTTTTTT 927 0.41158292929831103 No Hit ACGCAGAGTACTTTTTTTTTTTTTT 795 0.3529756513399755 No Hit GTACATGGGAAGCAGTGGTATCAAC 778 0.34542774433018986 No Hit CCCATGTACTCTGCGTTGATACCAC 554 0.2459729696130144 No Hit GTATCAACGCAGAGTACATGGGAAG 533 0.23664908448327915 No Hit GCAGAGTACTTTTTTTTTTTTTTTT 437 0.19402560960448967 No Hit GTCCTAAAGTGTGTATTTCTCATTT 388 0.17226987763510754 No Hit GTACATGGGAGTGGTATCAACGCAA 314 0.13941428241604062 No Hit CTGTAGGACGTGGAATATGGCAAGA 311 0.13808229882607848 No Hit TATCAACGCAGAGTACATGGGAAGC 299 0.13275436446622976 No Hit GTATCAACGCAGAGTACATGGGAGT 294 0.13053439181629284 No Hit GAGTACATGGGAAGCAGTGGTATCA 287 0.12742643010638108 No Hit AAAAAAAAAAAAAAAAAAAAAAAAA 286 0.1269824355763937 No Hit GTCCTACAGTGGACATTTCTAAATT 267 0.11854653950663328 No Hit GCGTTGATACCACTGCTTCCCATGT 258 0.11455058873674677 No Hit ATCAACGCAGAGTACTTTTTTTTTT 245 0.10877865984691068 No Hit GGTATCAACGCAGAGTACATGGGAA 236 0.10478270907702417 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.439945299873906E-4 2 0.0 0.0 0.0 0.0 4.439945299873906E-4 3 0.0 0.0 0.0 0.0 4.439945299873906E-4 4 0.0 0.0 0.0 0.0 4.439945299873906E-4 5 0.0 0.0 0.0 0.0 4.439945299873906E-4 6 0.0 0.0 0.0 0.0 4.439945299873906E-4 7 0.0 0.0 0.0 0.0 4.439945299873906E-4 8 0.0 0.0 0.0 0.0 4.439945299873906E-4 9 0.0 0.0 0.0 0.0 4.439945299873906E-4 10 0.0 0.0 0.0 0.0 4.439945299873906E-4 11 0.0 0.0 0.0 0.0 4.439945299873906E-4 12 0.0 0.0 0.0 0.0 0.0013319835899621717 13 0.0 0.0 0.0 0.0 0.0013319835899621717 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAATGG 25 0.006023726 18.995998 3 TACCCTG 35 0.0021622772 16.285904 5 TTGGATG 35 0.0021622772 16.285904 4 GTCCTAG 35 0.002165493 16.282284 1 GGGACGC 55 1.9482514E-4 13.818342 7 GTCCTAA 130 1.4551915E-11 13.151075 1 GACGCAG 60 4.0598592E-4 12.669633 9 GGACGCA 60 4.0674896E-4 12.666816 8 AAAGTGT 110 3.7483915E-8 12.09105 6 ACATTTC 80 2.8340988E-5 11.877781 13 ATGGCAA 105 2.6873386E-7 11.759427 17 TAGGACA 65 7.9759106E-4 11.692445 4 TGGCAAG 115 6.952905E-8 11.565353 18 GTATTTC 125 1.7900675E-8 11.402669 13 CCTAAAG 125 1.8018909E-8 11.397598 3 TCCTAAA 135 4.640242E-9 11.256887 2 TTAGGAC 110 4.9090704E-7 11.224907 3 TGGACAG 60 0.0058487044 11.083464 5 AGGACAT 60 0.0058487044 11.083464 5 CTAAAGT 130 3.2026946E-8 10.961667 4 >>END_MODULE