##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062316_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1431136 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.954677962122396 32.0 32.0 32.0 32.0 32.0 2 31.183638731748765 32.0 32.0 32.0 32.0 32.0 3 31.419153735214543 32.0 32.0 32.0 32.0 32.0 4 31.552062138049774 32.0 32.0 32.0 32.0 32.0 5 31.47074911119558 32.0 32.0 32.0 32.0 32.0 6 35.13420527469088 36.0 36.0 36.0 36.0 36.0 7 35.140981709634865 36.0 36.0 36.0 36.0 36.0 8 35.060871223978715 36.0 36.0 36.0 36.0 36.0 9 35.21484820450328 36.0 36.0 36.0 36.0 36.0 10 35.026841613934664 36.0 36.0 36.0 36.0 36.0 11 35.2218678029202 36.0 36.0 36.0 36.0 36.0 12 35.112600759117235 36.0 36.0 36.0 36.0 36.0 13 35.17232184781879 36.0 36.0 36.0 36.0 36.0 14 35.12625774210138 36.0 36.0 36.0 36.0 36.0 15 35.09072582899179 36.0 36.0 36.0 36.0 36.0 16 35.10723788654607 36.0 36.0 36.0 36.0 36.0 17 35.08784280459719 36.0 36.0 36.0 36.0 36.0 18 35.08564804463028 36.0 36.0 36.0 36.0 36.0 19 35.08548523690271 36.0 36.0 36.0 36.0 36.0 20 35.08389698812692 36.0 36.0 36.0 36.0 36.0 21 35.07113509827158 36.0 36.0 36.0 36.0 36.0 22 35.050721943966195 36.0 36.0 36.0 36.0 36.0 23 35.02067937638352 36.0 36.0 36.0 36.0 36.0 24 35.002019374818325 36.0 36.0 36.0 36.0 36.0 25 34.985654053842545 36.0 36.0 36.0 36.0 36.0 26 34.94415205822507 36.0 36.0 36.0 32.0 36.0 27 34.93263393555888 36.0 36.0 36.0 32.0 36.0 28 34.91074293428437 36.0 36.0 36.0 32.0 36.0 29 34.88509268161796 36.0 36.0 36.0 32.0 36.0 30 34.86711745075241 36.0 36.0 36.0 32.0 36.0 31 34.86964830735863 36.0 36.0 36.0 32.0 36.0 32 34.845080411645014 36.0 36.0 36.0 32.0 36.0 33 34.81758337432641 36.0 36.0 36.0 32.0 36.0 34 34.79948516423317 36.0 36.0 36.0 32.0 36.0 35 34.80060525344901 36.0 36.0 36.0 32.0 36.0 36 34.773208835498515 36.0 36.0 36.0 32.0 36.0 37 34.765206800751294 36.0 36.0 36.0 32.0 36.0 38 34.749682070746594 36.0 36.0 36.0 32.0 36.0 39 34.734550734521385 36.0 36.0 36.0 32.0 36.0 40 34.71836568991347 36.0 36.0 36.0 32.0 36.0 41 34.68622618674955 36.0 36.0 36.0 32.0 36.0 42 34.66929767681059 36.0 36.0 36.0 32.0 36.0 43 34.658739630615116 36.0 36.0 36.0 32.0 36.0 44 34.6157521018268 36.0 36.0 36.0 32.0 36.0 45 34.60680186928426 36.0 36.0 36.0 32.0 36.0 46 34.58511629921964 36.0 36.0 36.0 32.0 36.0 47 34.56961602531136 36.0 36.0 36.0 32.0 36.0 48 34.553176637300716 36.0 36.0 36.0 32.0 36.0 49 34.530280141090714 36.0 36.0 36.0 32.0 36.0 50 34.06883133398922 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 1.0 20 7.0 21 32.0 22 69.0 23 207.0 24 523.0 25 1397.0 26 3167.0 27 6069.0 28 10973.0 29 17944.0 30 28581.0 31 44645.0 32 71364.0 33 126626.0 34 283091.0 35 836439.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.78351452187612 18.355352272743158 12.069575282127126 26.791557923253595 2 16.26114372841656 19.72665284953818 36.871678194139506 27.140525227905755 3 18.97330225304165 22.640678847234216 28.437628394865044 29.94839050485909 4 13.066482197696233 15.780202426745205 35.13344303647105 36.019872339087506 5 15.005072893142232 36.08951210786396 33.29697526999531 15.608439728998501 6 35.42498466251239 34.809039544864426 16.046296153959027 13.719679638664164 7 30.862894931019834 29.960814346085908 19.915577555172952 19.260713167721306 8 27.99803792232185 33.73369127741878 18.770612995550387 19.497657804708986 9 26.59719271962972 14.724596404534578 18.51557084721508 40.16264002862062 10 16.336124824003324 26.843728928437915 31.410314191183918 25.40983205637484 11 37.3367730250654 21.317191378038146 21.674529883952328 19.671505712944125 12 24.016375802159963 23.709067482056213 28.586241978400373 23.688314737383447 13 29.44192585470563 19.457130559220086 24.883309482816447 26.21763410325783 14 23.22588489144288 19.34812624376719 24.90462122397871 32.521367640811214 15 25.17126254947119 27.09351172774635 21.876117992979005 25.859107729803455 16 25.85367796518977 25.93074987544816 23.48415344227747 24.7314187170846 17 24.204408246316213 26.167184670080275 24.945637591395926 24.68276949220759 18 24.6776677483279 25.583384341905568 25.56312066252449 24.175827247242044 19 25.68463095051763 25.188172193278625 24.976102900073787 24.151093956129955 20 25.560761214001477 24.760906553190303 24.846502950455406 24.831829282352818 21 26.090672025579682 24.555877289090624 24.687241464123606 24.66620922120609 22 25.541667598327482 24.579914138139213 25.0136954139928 24.864722849540506 23 24.60800371173669 24.704710104420542 25.184259217852112 25.503026965990657 24 24.67951719000896 25.058171141244422 25.21336405980762 25.048947608939 25 24.95124471832339 24.701651216139446 25.196366220468203 25.150737845068953 26 24.723155441022744 25.313459033713265 25.25818794685032 24.70519757841367 27 25.104235886492415 25.026534994399523 24.93010762831303 24.93912149079503 28 24.96029314247023 24.9403785724817 25.20793256716975 24.89139571787832 29 24.839864414927774 25.039985857339403 25.234726939742064 24.88542278799076 30 24.784626876413665 25.34160284140894 25.218482574149913 24.655287708027483 31 25.089736718721067 24.928675292478466 24.9504762317356 25.031111757064867 32 24.98055730825104 25.042326722468765 24.817888534157298 25.1592274351229 33 24.65581513973175 24.82016022248076 25.15325248840955 25.37077214937794 34 25.0738928647792 24.870696221017578 25.27890625982618 24.776504654377042 35 25.353670585703362 24.768889565896696 25.317475512425812 24.55996433597413 36 24.726300578842483 25.150370475958887 25.10362426386944 25.019704681329184 37 25.4862282495224 24.916603662311562 24.88753547925468 24.709632608911356 38 24.872129553026408 24.813155423383943 25.139818996936697 25.174896026652956 39 25.296043322560923 24.887832998515155 24.78413835269456 25.031985326229368 40 25.23610614225343 25.094959528654158 25.08566621201619 24.583268117076223 41 24.739278539610446 25.22337322036859 25.294226570006114 24.743121670014848 42 25.502772762084714 25.140594690384216 24.93040143557521 24.42623111195586 43 25.13804240427872 24.66951579294548 25.118896052078078 25.073545750697722 44 24.72630714672536 25.060741051307584 25.032300892685566 25.180650909281482 45 24.9227522692176 25.198482296958307 25.01345109739992 24.865314336424174 46 24.828332193190306 25.00637618291295 25.010848245449154 25.154443378447596 47 24.845174467395275 24.962354843420606 25.243042720876623 24.949427968307493 48 25.23943221060252 25.369193078861347 24.684542035673406 24.706832674862728 49 24.769565208276994 25.231657628158498 24.946841553239853 25.051935610324655 50 24.87742092365614 25.37856792980588 24.90760713484642 24.836404011691567 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 23.0 1 24.5 2 26.0 3 56.0 4 86.0 5 103.0 6 120.0 7 100.0 8 80.0 9 116.0 10 152.0 11 246.5 12 341.0 13 646.5 14 952.0 15 1215.5 16 1479.0 17 1629.0 18 1779.0 19 2038.0 20 2297.0 21 3019.0 22 3741.0 23 4839.5 24 5938.0 25 7733.0 26 9528.0 27 11778.0 28 14028.0 29 16165.5 30 18303.0 31 21233.0 32 24163.0 33 27743.0 34 31323.0 35 35809.5 36 40296.0 37 45833.0 38 51370.0 39 56543.5 40 61717.0 41 67508.0 42 73299.0 43 77306.5 44 81314.0 45 87859.5 46 94405.0 47 98998.5 48 103592.0 49 106379.5 50 109167.0 51 109213.0 52 109259.0 53 109262.5 54 109266.0 55 106098.5 56 102931.0 57 98587.5 58 94244.0 59 88107.5 60 81971.0 61 72202.0 62 62433.0 63 53964.5 64 45496.0 65 38460.5 66 31425.0 67 26964.5 68 22504.0 69 19573.5 70 16643.0 71 12953.5 72 9264.0 73 7976.5 74 6689.0 75 5106.0 76 3523.0 77 2953.0 78 2383.0 79 2013.5 80 1644.0 81 1283.5 82 923.0 83 744.0 84 565.0 85 427.0 86 289.0 87 188.5 88 88.0 89 55.0 90 22.0 91 17.0 92 12.0 93 12.0 94 12.0 95 11.5 96 11.0 97 11.5 98 12.0 99 10.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.027810075352726785 2 0.004332222793640856 3 2.79498244751023E-4 4 6.987456118775575E-5 5 0.0 6 1.397491223755115E-4 7 0.0 8 0.0 9 0.0 10 6.987456118775575E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 3.493728059387787E-4 17 0.0 18 2.79498244751023E-4 19 0.0 20 6.987456118775575E-5 21 0.0 22 0.0 23 0.0 24 9.782438566285803E-4 25 6.288710506898017E-4 26 5.58996489502046E-4 27 4.891219283142902E-4 28 0.0016071149073183819 29 3.493728059387787E-4 30 0.0010481184178163362 31 3.493728059387787E-4 32 4.891219283142902E-4 33 6.987456118775575E-5 34 6.987456118775574E-4 35 1.397491223755115E-4 36 2.79498244751023E-4 37 0.0012577421013796033 38 0.0 39 7.686201730653132E-4 40 0.0 41 7.686201730653132E-4 42 0.005030968405518413 43 0.00377322630413881 44 0.0042623482324531 45 0.0018167385908816494 46 0.0020263622744449163 47 6.288710506898017E-4 48 0.0029347315698857413 49 0.0025853587639469624 50 0.001327616662567359 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1431136.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.84549130939513 #Duplication Level Percentage of deduplicated Percentage of total 1 68.8019351188639 35.67070129274626 2 16.4371232401285 17.04381460195078 3 6.482169687431464 10.082138165872575 4 3.0934080005758293 6.4151703044107 5 1.6183818448570597 4.195290093640977 6 0.9326373092700081 2.9011823707545514 7 0.6062524335213371 2.200201869140109 8 0.3884289616976498 1.6110632286410302 9 0.2960245091650232 1.3812782505554855 >10 1.2335629665402554 10.836769567610862 >50 0.06492853718482057 2.287981362637688 >100 0.04243587214138659 4.340372590308332 >500 0.002575942691595089 0.9517969928445583 >1k 1.355759311365836E-4 0.08223930888620733 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.79498244751023E-4 2 0.0 0.0 0.0 0.0 2.79498244751023E-4 3 0.0 0.0 0.0 0.0 2.79498244751023E-4 4 0.0 0.0 0.0 0.0 2.79498244751023E-4 5 0.0 0.0 0.0 0.0 3.493728059387787E-4 6 0.0 0.0 0.0 0.0 4.891219283142902E-4 7 0.0 0.0 0.0 0.0 4.891219283142902E-4 8 0.0 0.0 0.0 0.0 4.891219283142902E-4 9 0.0 0.0 0.0 0.0 4.891219283142902E-4 10 0.0 0.0 0.0 0.0 4.891219283142902E-4 11 0.0 0.0 0.0 0.0 4.891219283142902E-4 12 0.0 0.0 0.0 0.0 9.083692954408246E-4 13 0.0 0.0 0.0 0.0 0.0011878675401918476 14 0.0 0.0 0.0 0.0 0.0011878675401918476 15 0.0 0.0 0.0 1.397491223755115E-4 0.0012577421013796033 16 0.0 0.0 0.0 3.493728059387787E-4 0.001327616662567359 17 0.0 0.0 0.0 4.1924736712653445E-4 0.001327616662567359 18 0.0 0.0 0.0 5.58996489502046E-4 0.001607114907318382 19 0.0 0.0 0.0 7.686201730653132E-4 0.001607114907318382 20 0.0 0.0 0.0 8.384947342530689E-4 0.001607114907318382 21 0.0 0.0 0.0 9.083692954408246E-4 0.0016769894685061378 22 0.0 0.0 0.0 0.0011878675401918476 0.0016769894685061378 23 0.0 0.0 0.0 0.001327616662567359 0.0016769894685061378 24 0.0 0.0 0.0 0.0018167385908816492 0.0016769894685061378 25 0.0 0.0 0.0 0.002096236835632672 0.0016769894685061378 26 0.0 0.0 0.0 0.0025154842027592067 0.0016769894685061378 27 0.0 0.0 0.0 0.0031443552534490085 0.0016769894685061378 28 0.0 0.0 0.0 0.004471971916016368 0.0016769894685061378 29 0.0 0.0 0.0 0.007336828924714353 0.0016769894685061378 30 0.0 0.0 0.0 0.012856919258547057 0.0016769894685061378 31 0.0 0.0 0.0 0.022429734141269593 0.0017468640296938935 32 0.0 0.0 0.0 0.03353978937012275 0.0018167385908816492 33 0.0 0.0 0.0 0.04416072267066163 0.0018167385908816492 34 0.0 0.0 0.0 0.05701764192920868 0.0020263622744449163 35 0.0 0.0 0.0 0.06896619189231491 0.0020263622744449163 36 0.0 0.0 0.0 0.08685407955638039 0.0020263622744449163 37 0.0 0.0 0.0 0.11410515841960513 0.0020263622744449163 38 0.0 0.0 0.0 0.15064955392080137 0.002096236835632672 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1115 0.0 26.647055 1 GGTATCA 525 0.0 23.056517 1 ACGACGG 295 0.0 18.643446 6 GACGGTA 320 0.0 18.56188 8 GTATAGG 285 0.0 18.533468 1 CGACGGT 300 0.0 18.332722 7 TACGACG 315 0.0 18.158125 5 TCAACGC 1675 0.0 17.468073 4 GTATTAG 230 0.0 17.22404 1 ATCAACG 1705 0.0 17.160719 3 CAACGCA 1740 0.0 16.81553 5 CTACGAC 355 0.0 16.731836 4 ACGGACC 435 0.0 16.689098 8 AACGCAG 1765 0.0 16.45271 6 ACGGTAT 335 0.0 16.417362 9 CGCGGGA 245 0.0 16.163855 44 TATCAAC 1860 0.0 15.96721 2 CTAGACA 280 0.0 15.713762 4 TAGACCC 140 1.5871774E-6 15.713762 4 TATAGGG 210 1.5097612E-10 15.713761 2 >>END_MODULE