##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062313_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5802551 Sequences flagged as poor quality 0 Sequence length 50 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.25548659546465 32.0 32.0 32.0 32.0 32.0 2 31.376185060674175 32.0 32.0 32.0 32.0 32.0 3 31.525030456432006 32.0 32.0 32.0 32.0 32.0 4 31.613121883805935 32.0 32.0 32.0 32.0 32.0 5 31.565450781906097 32.0 32.0 32.0 32.0 32.0 6 35.20916627876257 36.0 36.0 36.0 36.0 36.0 7 35.21467592443393 36.0 36.0 36.0 36.0 36.0 8 35.153286718203766 36.0 36.0 36.0 36.0 36.0 9 35.26266671331282 36.0 36.0 36.0 36.0 36.0 10 35.11908193482487 36.0 36.0 36.0 36.0 36.0 11 35.25364723205362 36.0 36.0 36.0 36.0 36.0 12 35.163059833511156 36.0 36.0 36.0 36.0 36.0 13 35.214609401968204 36.0 36.0 36.0 36.0 36.0 14 35.16723334271426 36.0 36.0 36.0 36.0 36.0 15 35.13804359496366 36.0 36.0 36.0 36.0 36.0 16 35.152723345301055 36.0 36.0 36.0 36.0 36.0 17 35.12984202982447 36.0 36.0 36.0 36.0 36.0 18 35.129992480893314 36.0 36.0 36.0 36.0 36.0 19 35.12009011209035 36.0 36.0 36.0 36.0 36.0 20 35.1229102510258 36.0 36.0 36.0 36.0 36.0 21 35.11041126566574 36.0 36.0 36.0 36.0 36.0 22 35.10058351921422 36.0 36.0 36.0 36.0 36.0 23 35.067492383953194 36.0 36.0 36.0 36.0 36.0 24 35.04553066401312 36.0 36.0 36.0 36.0 36.0 25 35.03375687693223 36.0 36.0 36.0 36.0 36.0 26 34.98479892723046 36.0 36.0 36.0 36.0 36.0 27 34.976044674144184 36.0 36.0 36.0 36.0 36.0 28 34.95591059863153 36.0 36.0 36.0 32.0 36.0 29 34.93366365931122 36.0 36.0 36.0 32.0 36.0 30 34.91815754829212 36.0 36.0 36.0 32.0 36.0 31 34.927042433577924 36.0 36.0 36.0 32.0 36.0 32 34.898628551476754 36.0 36.0 36.0 32.0 36.0 33 34.87798125341768 36.0 36.0 36.0 32.0 36.0 34 34.868880945639255 36.0 36.0 36.0 32.0 36.0 35 34.852074199778684 36.0 36.0 36.0 32.0 36.0 36 34.83301792608113 36.0 36.0 36.0 32.0 36.0 37 34.82800599253673 36.0 36.0 36.0 32.0 36.0 38 34.807038145808626 36.0 36.0 36.0 32.0 36.0 39 34.79683246213605 36.0 36.0 36.0 32.0 36.0 40 34.78263112207028 36.0 36.0 36.0 32.0 36.0 41 34.75752406139989 36.0 36.0 36.0 32.0 36.0 42 34.72116746582667 36.0 36.0 36.0 32.0 36.0 43 34.72647530370694 36.0 36.0 36.0 32.0 36.0 44 34.67255040067722 36.0 36.0 36.0 32.0 36.0 45 34.6628043424349 36.0 36.0 36.0 32.0 36.0 46 34.65386172392108 36.0 36.0 36.0 32.0 36.0 47 34.63910063005047 36.0 36.0 36.0 32.0 36.0 48 34.610199893115976 36.0 36.0 36.0 32.0 36.0 49 34.60342494189194 36.0 36.0 36.0 32.0 36.0 50 34.16320097832833 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 9.0 20 32.0 21 98.0 22 298.0 23 921.0 24 2365.0 25 6012.0 26 12996.0 27 25512.0 28 44647.0 29 72583.0 30 110453.0 31 168627.0 32 260943.0 33 455082.0 34 1048418.0 35 3593551.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.42659048363777 17.281507773023808 11.59700087936647 26.694900863971956 2 17.034444949418962 19.04208919504477 35.71760584171065 28.205860013825617 3 19.170434847947465 21.942292798284335 27.610040716693774 31.277231637074422 4 13.04438565802966 15.048073691738978 33.7328588293078 38.17468182092356 5 15.526343499609052 35.69778188937934 32.19306473997385 16.582809871037757 6 36.924426729600015 33.52657051453837 15.473479635904338 14.075523119957273 7 32.45644889635611 28.908474910431636 19.10420089371037 19.53087529950189 8 29.356329655697987 32.24721333771991 18.050543631585487 20.34591337499662 9 27.019460923307697 13.92246272372272 18.06221091378602 40.99586543918356 10 17.272015673114637 25.57123181057701 29.516515847865456 27.640236668442896 11 38.76708709669247 20.428135831981486 20.751665948304463 20.05311112302158 12 24.937979864373442 22.892896589793008 27.28953179386101 24.879591751972537 13 29.83884157157774 18.264742524451748 24.65446663028037 27.241949273690143 14 24.313961221538598 18.558182427004947 23.57731969955973 33.55053665189673 15 26.09605671712321 26.222259830202265 21.01343012754218 26.66825332513234 16 27.136930404512388 24.857816013292165 22.356246435813976 25.649007146381475 17 25.12577657654366 25.344180516465947 23.860850167452213 25.669192739538175 18 26.178663641787587 23.955760109441616 24.65314363729301 25.21243261147779 19 26.363439114968575 24.199442624459483 24.109240918347812 25.327877342224138 20 26.788264283520657 23.232554235862104 23.63580964566122 26.34337183495602 21 27.68049776727512 23.2814153636909 23.420405955932143 25.617680913101843 22 27.110627722186326 23.106854209467524 24.057453351120913 25.725064717225234 23 25.343810108281723 23.33355564942235 24.583023771104735 26.739610471191195 24 25.543779199733628 24.025414593348067 24.365527024332472 26.065279182585833 25 25.816904760550674 23.32117142432206 24.38386066247161 26.478063152655658 26 25.50784356810182 24.575025527679763 24.533250610725503 25.383880293492915 27 26.17014595717312 23.601332799312853 24.152368865686725 26.076152377827306 28 25.767002271450384 23.514767874315375 24.65216477149347 26.06606508274077 29 25.33222209181909 23.909512403147666 24.880297677612084 25.877967827421163 30 25.36087679977389 24.165022968686582 24.88259730993638 25.591502921603148 31 26.091228278191497 23.831296776004773 23.80124087444061 26.27623407136312 32 26.120784531076097 23.671218844022004 23.674355424163867 26.53364120073803 33 25.35466401403249 23.66012848869132 24.27186122476835 26.713346272507838 34 26.322507995694266 23.670632889490008 24.342929545171753 25.663929569643972 35 26.730230838762715 23.330751128601552 24.636180565907832 25.302837466727908 36 25.206508523415156 24.20627500519169 24.090549922490904 26.496666548902247 37 26.531068422136567 23.87537301150293 24.141519896388328 25.452038669972175 38 25.58698751635272 23.462852803878846 24.455898793478937 26.494260886289496 39 26.564956642031923 23.60465102251457 23.64637435288769 26.184017982565816 40 26.38678468622626 23.83435119200364 24.21566689490001 25.563197226870088 41 25.258880239345523 24.472872852861443 24.691951214047762 25.576295693745273 42 26.971294259093103 24.128071608033704 24.000655607286408 24.89997852558678 43 26.2800384746169 23.20615373267035 24.234131245597627 26.279676547115123 44 25.505195518748746 24.095428922421906 24.03279867252824 26.366576886301107 45 25.763544013390284 24.261187064147073 24.06018458517969 25.915084337282952 46 25.579411005892215 24.02019439883593 24.244842781462363 26.155551813809492 47 25.795662586982036 23.86213093652364 24.630197616851106 25.71200885964321 48 26.634185434287115 24.5474184917253 23.313326985303306 25.50506908868428 49 25.686761365193338 24.510788141962653 23.65323801092076 26.14921248192325 50 26.040545196065878 24.347764044337726 23.77171556285667 25.83997519673973 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 34.0 1 53.5 2 73.0 3 185.5 4 298.0 5 371.0 6 444.0 7 459.0 8 474.0 9 608.0 10 742.0 11 1058.0 12 1374.0 13 2358.0 14 3342.0 15 4344.0 16 5346.0 17 5320.0 18 5294.0 19 5035.0 20 4776.0 21 5456.0 22 6136.0 23 7318.0 24 8500.0 25 11036.5 26 13573.0 27 17605.5 28 21638.0 29 27141.5 30 32645.0 31 40279.0 32 47913.0 33 58669.5 34 69426.0 35 85054.0 36 100682.0 37 130388.5 38 160095.0 39 187537.0 40 214979.0 41 241182.5 42 267386.0 43 283777.5 44 300169.0 45 334918.5 46 369668.0 47 402049.0 48 434430.0 49 458549.0 50 482668.0 51 472147.0 52 461626.0 53 464560.5 54 467495.0 55 475378.0 56 483261.0 57 470315.0 58 457369.0 59 422283.0 60 387197.0 61 343431.5 62 299666.0 63 259586.5 64 219507.0 65 186448.0 66 153389.0 67 132055.0 68 110721.0 69 98357.0 70 85993.0 71 66025.0 72 46057.0 73 39778.5 74 33500.0 75 24375.0 76 15250.0 77 13079.0 78 10908.0 79 9297.5 80 7687.0 81 6168.5 82 4650.0 83 3858.5 84 3067.0 85 2496.5 86 1926.0 87 1337.0 88 748.0 89 477.5 90 207.0 91 146.0 92 85.0 93 69.0 94 53.0 95 41.5 96 30.0 97 33.0 98 36.0 99 27.0 100 18.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.030745098147349333 2 0.004790996235965871 3 2.92974589969136E-4 4 1.7233799409949176E-5 5 0.0 6 1.7233799409949177E-4 7 0.0 8 0.0 9 0.0 10 5.170139822984752E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 5.85949179938272E-4 17 0.0 18 8.616899704974589E-5 19 0.0 20 4.308449852487294E-4 21 0.0 22 0.0 23 3.446759881989835E-5 24 9.995603657770523E-4 25 1.378703952795934E-4 26 4.480787846586786E-4 27 4.653125840686277E-4 28 0.001568275746305375 29 5.514815811183736E-4 30 0.0014821067492556293 31 5.170139822984753E-4 32 9.133913687273063E-4 33 2.92974589969136E-4 34 9.133913687273063E-4 35 2.757407905591868E-4 36 1.0340279645969504E-4 37 0.0019991207315541047 38 0.0 39 7.238195752178654E-4 40 1.7233799409949177E-4 41 0.0010512617640068998 42 0.005118438424754905 43 0.004894399032425566 44 0.004187813256617649 45 0.002326562920343139 46 0.0025850699114923765 47 0.0010340279645969506 48 0.003894838666648514 49 0.003584630277269429 50 0.0015165743480755275 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 5802551.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.22720218812484 #Duplication Level Percentage of deduplicated Percentage of total 1 62.93013379317976 20.28062145478552 2 16.557658405561142 10.672140103958474 3 7.300126947990606 7.057880014556159 4 3.8686802236352937 4.987069590731785 5 2.2719274088312353 3.6608931980573396 6 1.4935691701714584 2.888013337743926 7 1.012278914240638 2.283604206800597 8 0.7191395713268416 1.854068509330524 9 0.5204611939641428 1.5095707316059759 >10 2.9053964837069706 17.256268360311218 >50 0.2439036055449767 5.440217585935889 >100 0.1481965157992864 9.022025297290824 >500 0.015121865934809216 3.4058519947782564 >1k 0.01249429890517307 7.686103861512226 >5k 8.579776072206977E-4 1.8201792763699998 >10k+ 5.3623600451293604E-5 0.17549247623129471 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 10155 0.1750092330080339 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 8130 0.1401107892028868 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 8070 0.13907676123828985 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 7722 0.13307939904362753 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 7498 0.12921902797579893 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 7311 0.12599630748613844 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 7200 0.12408335575163407 No Hit GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA 6797 0.11713813458942456 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 6570 0.11322606212336608 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 6052 0.1042989540290124 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 5993 0.10328215986382541 No Hit GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGAT 5881 0.10135197432991111 No Hit GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAAT 5872 0.10119687013522156 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.378703952795934E-4 2 0.0 0.0 0.0 0.0 1.378703952795934E-4 3 0.0 0.0 0.0 0.0 1.378703952795934E-4 4 0.0 0.0 0.0 0.0 1.5510419468954257E-4 5 0.0 0.0 0.0 0.0 1.7233799409949177E-4 6 0.0 0.0 0.0 0.0 2.068055929193901E-4 7 0.0 0.0 0.0 1.7233799409949176E-5 2.068055929193901E-4 8 0.0 0.0 0.0 1.7233799409949176E-5 2.068055929193901E-4 9 0.0 0.0 0.0 1.7233799409949176E-5 2.068055929193901E-4 10 0.0 0.0 0.0 1.7233799409949176E-5 2.068055929193901E-4 11 0.0 0.0 0.0 1.7233799409949176E-5 2.068055929193901E-4 12 0.0 0.0 0.0 3.446759881989835E-5 4.653125840686277E-4 13 0.0 0.0 0.0 3.446759881989835E-5 5.85949179938272E-4 14 0.0 0.0 0.0 3.446759881989835E-5 5.85949179938272E-4 15 0.0 0.0 0.0 1.0340279645969505E-4 7.755209734477129E-4 16 0.0 0.0 0.0 1.5510419468954257E-4 8.616899704974588E-4 17 0.0 0.0 0.0 1.7233799409949177E-4 8.616899704974588E-4 18 0.0 0.0 0.0 2.5850699114923764E-4 9.133913687273063E-4 19 0.0 0.0 0.0 2.92974589969136E-4 9.133913687273063E-4 20 0.0 0.0 0.0 3.1020838937908515E-4 0.0010340279645969506 21 0.0 0.0 0.0 3.9637738642883105E-4 0.0011201969616466965 22 0.0 0.0 0.0 4.997801828885261E-4 0.0011546645604665947 23 0.0 0.0 0.0 6.031829793482212E-4 0.0012063659586964424 24 0.0 0.0 0.0 7.927547728576621E-4 0.0012063659586964424 25 0.0 0.0 0.0 0.001085729362826798 0.0012063659586964424 26 0.0 0.0 0.0 0.0013442363539760357 0.0012580673569262898 27 0.0 0.0 0.0 0.0016199771445352224 0.0012925349557461883 28 0.0 0.0 0.0 0.002343796719753088 0.0013442363539760357 29 0.0 0.0 0.0 0.004239514654847497 0.0013442363539760357 30 0.0 0.0 0.0 0.007979249126806469 0.001361470153385985 31 0.0 0.0 0.0 0.014562560501407053 0.0013787039527959342 32 0.0 0.0 0.0 0.02173182105594591 0.0013959377522058832 33 0.0 0.0 0.0 0.02864257461933553 0.0014131715516158324 34 0.0 0.0 0.0 0.03675969414142159 0.0015165743480755275 35 0.0 0.0 0.0 0.04660019360450257 0.0015338081474854767 36 0.0 0.0 0.0 0.06173146948643795 0.0015338081474854767 37 0.0 0.0 0.0 0.08272223716775605 0.0015338081474854767 38 0.0 0.0 0.0 0.1128813861351671 0.0016372109439451716 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 6565 0.0 27.488094 1 GGTATCA 2880 0.0 26.515665 1 CGCAATA 1645 0.0 19.5262 36 ATACGAA 1740 0.0 18.713959 40 TAGCGGC 1740 0.0 18.080484 30 CGAATGC 1805 0.0 17.918467 43 TACGAAT 1795 0.0 17.895409 41 TCTAGCG 1800 0.0 17.844622 28 TCAACGC 10010 0.0 17.757349 4 CTAGCGG 1810 0.0 17.502787 29 ATCAACG 10325 0.0 17.25836 3 GCGCAAT 1870 0.0 17.176346 35 CAACGCA 10360 0.0 17.136202 5 AACGCAG 10465 0.0 16.985289 6 CAATACG 1915 0.0 16.888916 38 GTATAGG 650 0.0 16.59007 1 TACCGTA 415 0.0 16.432907 7 TATCAAC 11190 0.0 16.220282 2 AATACGA 1990 0.0 16.141838 39 GATTAAT 2010 0.0 15.871763 38 >>END_MODULE