##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062309_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4780459 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.29689533996631 32.0 32.0 32.0 32.0 32.0 2 31.44174879441493 32.0 32.0 32.0 32.0 32.0 3 31.561678700727274 32.0 32.0 32.0 32.0 32.0 4 31.645711008085208 32.0 32.0 32.0 32.0 32.0 5 31.614019281412098 32.0 32.0 32.0 32.0 32.0 6 35.26061116725403 36.0 36.0 36.0 36.0 36.0 7 35.272952450800226 36.0 36.0 36.0 36.0 36.0 8 35.219221417859664 36.0 36.0 36.0 36.0 36.0 9 35.31551489093411 36.0 36.0 36.0 36.0 36.0 10 35.188347604278164 36.0 36.0 36.0 36.0 36.0 11 35.31257542424274 36.0 36.0 36.0 36.0 36.0 12 35.23892893966877 36.0 36.0 36.0 36.0 36.0 13 35.26899467185055 36.0 36.0 36.0 36.0 36.0 14 35.23570539983713 36.0 36.0 36.0 36.0 36.0 15 35.205592182675346 36.0 36.0 36.0 36.0 36.0 16 35.22629751661922 36.0 36.0 36.0 36.0 36.0 17 35.21083352037953 36.0 36.0 36.0 36.0 36.0 18 35.20531166567896 36.0 36.0 36.0 36.0 36.0 19 35.1972030300856 36.0 36.0 36.0 36.0 36.0 20 35.19601716069524 36.0 36.0 36.0 36.0 36.0 21 35.189964185447465 36.0 36.0 36.0 36.0 36.0 22 35.16998555996401 36.0 36.0 36.0 36.0 36.0 23 35.145923226200665 36.0 36.0 36.0 36.0 36.0 24 35.12858158599415 36.0 36.0 36.0 36.0 36.0 25 35.117150884465275 36.0 36.0 36.0 36.0 36.0 26 35.075422464662914 36.0 36.0 36.0 36.0 36.0 27 35.05887468128061 36.0 36.0 36.0 36.0 36.0 28 35.04481954557083 36.0 36.0 36.0 36.0 36.0 29 35.033541130673854 36.0 36.0 36.0 36.0 36.0 30 35.009440097697734 36.0 36.0 36.0 36.0 36.0 31 35.007575632381744 36.0 36.0 36.0 36.0 36.0 32 34.98036297351363 36.0 36.0 36.0 36.0 36.0 33 34.960786401473165 36.0 36.0 36.0 36.0 36.0 34 34.955594013043516 36.0 36.0 36.0 36.0 36.0 35 34.947749787206625 36.0 36.0 36.0 36.0 36.0 36 34.91821622149672 36.0 36.0 36.0 36.0 36.0 37 34.90884912934093 36.0 36.0 36.0 36.0 36.0 38 34.90440876074871 36.0 36.0 36.0 36.0 36.0 39 34.88206571795721 36.0 36.0 36.0 32.0 36.0 40 34.87706619803663 36.0 36.0 36.0 32.0 36.0 41 34.848199304711116 36.0 36.0 36.0 32.0 36.0 42 34.83181133861832 36.0 36.0 36.0 32.0 36.0 43 34.81667388006047 36.0 36.0 36.0 32.0 36.0 44 34.78769737382959 36.0 36.0 36.0 32.0 36.0 45 34.7699482413718 36.0 36.0 36.0 32.0 36.0 46 34.752174215906884 36.0 36.0 36.0 32.0 36.0 47 34.72757950648672 36.0 36.0 36.0 32.0 36.0 48 34.70579707931812 36.0 36.0 36.0 32.0 36.0 49 34.69025819487208 36.0 36.0 36.0 32.0 36.0 50 34.27061627345826 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 8.0 20 33.0 21 76.0 22 246.0 23 708.0 24 1982.0 25 4647.0 26 10289.0 27 19518.0 28 34210.0 29 55095.0 30 85541.0 31 128199.0 32 197128.0 33 336673.0 34 778263.0 35 3127841.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.159911211123216 16.81464464047431 11.982020419851363 27.043423728551108 2 16.21731929579106 18.922419825493716 37.05924967192995 27.80101120678528 3 19.18994587534301 21.695318804981795 28.202849692267208 30.911885627407987 4 13.08228481084549 15.051071477057528 34.586274910536794 37.280368801560186 5 15.037707699851227 35.81219030151099 33.435241324258605 15.71486067437918 6 36.30564068236254 34.001861749416896 15.623382735934902 14.069114832285665 7 31.52021594579098 29.791386140954245 19.293440232412827 19.394957680841944 8 28.33667227352018 33.75972892979524 18.23713999011392 19.666458806570667 9 26.956156302145885 14.523500776808252 17.8077460762659 40.712596844779966 10 15.509524614388251 27.302562768070658 32.03570956410853 25.152203053432558 11 37.581244813521046 20.943888442511483 21.632755348388095 19.84211139557938 12 24.40116080952093 22.900551139775967 28.86297272415587 23.83531532654723 13 29.86531209659993 19.576592958960635 24.65848990651316 25.89960503792628 14 23.3683209080969 18.62204026851815 25.132523885258717 32.87711493812623 15 25.22529740345017 26.85984755857126 21.927957127129424 25.986897910849144 16 25.66441212702877 25.966665334847562 23.153779713075963 25.21514282504771 17 24.368517751119715 25.635613651325112 25.0337258409705 24.962142756584672 18 24.66109927588498 25.623936293943505 25.26961863052395 24.445345799647562 19 25.433875701057158 25.11511969875696 25.175992514526325 24.275012085659554 20 25.644353834619682 24.736802910522194 25.05624995816292 24.562593296695205 21 25.622518674462015 24.414873132475353 25.024249763464134 24.938358429598498 22 25.466403958280992 24.318355203966817 25.04244885271477 25.172791985037417 23 25.076933021257176 24.527403969955174 24.86239286327646 25.533270145511196 24 24.795781285888626 24.649204022915168 25.17212944318212 25.382885248014087 25 25.105539205401335 24.419285962767947 25.336061388350178 25.139113443480543 26 25.020474052498503 24.602876596531576 25.156674875811667 25.219974475158253 27 24.88751021350781 24.959825823345746 25.16945114188377 24.983212821262672 28 25.290238311498957 24.632696717542657 25.001851316484753 25.07521365447364 29 24.90736212258197 24.871675045947633 25.024568857858746 25.19639397361165 30 25.166837572938487 24.887781310259104 24.871171814564395 25.074209302238014 31 25.001521826124414 24.633083014726047 25.01143722932675 25.35395792982279 32 24.97763794813008 24.92649181452676 24.937327682504883 25.158542554838277 33 25.00208139575261 24.78990454028766 24.960976444457277 25.24703761950245 34 25.087377113513686 24.7660878900383 25.145823763060548 25.000711233387467 35 25.246802440694303 24.707270853349783 25.125244668747225 24.920682037208685 36 25.332410966073716 24.749830193916768 24.935565729858656 24.982193110150856 37 25.21092992835924 24.691473207459076 25.0091886019916 25.088408262190086 38 25.13424445942209 24.76584879524096 24.94112488803374 25.158781857303214 39 25.041058099276192 24.929498887231897 24.953869125752732 25.07557388773918 40 25.28346691902774 24.82664819142625 24.916388659482408 24.9734962300636 41 25.030264096207507 24.755329922054916 25.12494202911587 25.089463952621706 42 25.371603458410995 24.71280670595348 24.977103612169287 24.938486223466235 43 25.09981695518017 24.44577166466189 25.209769363527013 25.24464201663093 44 24.903530472990415 24.83250932061103 25.06672222842829 25.197237977970268 45 25.031132572986614 24.894281041000443 25.00705490357113 25.06753148244181 46 25.21613434971425 24.773343430201912 24.825013178923765 25.18550904116008 47 24.973511747187118 25.057290979183634 25.007839267713035 24.961358005916214 48 25.092238108516824 24.967747779371592 24.8092846230491 25.130729489062485 49 25.23244502925567 24.694190913902354 24.910684961309716 25.16267909553226 50 25.141186031698215 25.046361231655546 24.752034089233213 25.06041864741303 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 57.0 1 63.5 2 70.0 3 199.0 4 328.0 5 401.5 6 475.0 7 416.5 8 358.0 9 497.5 10 637.0 11 1047.5 12 1458.0 13 2730.0 14 4002.0 15 5327.0 16 6652.0 17 6468.5 18 6285.0 19 6305.5 20 6326.0 21 7791.5 22 9257.0 23 12018.5 24 14780.0 25 18770.0 26 22760.0 27 28452.0 28 34144.0 29 42474.5 30 50805.0 31 59908.5 32 69012.0 33 80253.5 34 91495.0 35 107679.0 36 123863.0 37 139807.0 38 155751.0 39 173741.0 40 191731.0 41 213646.0 42 235561.0 43 255297.0 44 275033.0 45 296298.5 46 317564.0 47 334534.0 48 351504.0 49 361575.5 50 371647.0 51 381037.5 52 390428.0 53 393299.0 54 396170.0 55 384535.0 56 372900.0 57 351892.5 58 330885.0 59 307436.5 60 283988.0 61 251788.0 62 219588.0 63 188628.0 64 157668.0 65 132884.0 66 108100.0 67 88289.0 68 68478.0 69 56109.5 70 43741.0 71 34951.0 72 26161.0 73 21961.0 74 17761.0 75 13912.0 76 10063.0 77 8178.5 78 6294.0 79 4911.5 80 3529.0 81 2754.0 82 1979.0 83 1323.5 84 668.0 85 472.5 86 277.0 87 187.0 88 97.0 89 62.0 90 27.0 91 25.5 92 24.0 93 26.5 94 29.0 95 23.5 96 18.0 97 21.0 98 24.0 99 15.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.031001207206253625 2 0.0048112534800528566 3 2.719404140899441E-4 4 4.183698678306832E-5 5 6.275548017460248E-5 6 1.8826644052380743E-4 7 0.0 8 0.0 9 0.0 10 6.275548017460248E-5 11 0.0 12 4.183698678306832E-5 13 0.0 14 0.0 15 0.0 16 6.275548017460248E-4 17 0.0 18 6.275548017460248E-5 19 0.0 20 2.3010342730687576E-4 21 0.0 22 0.0 23 4.183698678306832E-5 24 9.413322026190372E-4 25 1.6734794713227328E-4 26 3.7653288104761486E-4 27 5.22962334788354E-4 28 0.0016107239911481303 29 3.5561438765608077E-4 30 0.0012760280968835836 31 3.7653288104761486E-4 32 8.158212422698323E-4 33 2.719404140899441E-4 34 6.484732951375589E-4 35 3.3469589426454656E-4 36 1.2551096034920495E-4 37 0.0016734794713227326 38 2.091849339153416E-5 39 7.949027488782981E-4 40 1.464294537407391E-4 41 8.785767224444347E-4 42 0.004790334986661322 43 0.004371965118830639 44 0.004037269224566094 45 0.0020081753655872793 46 0.002070930845761882 47 7.949027488782981E-4 48 0.003514306889777739 49 0.003953595250999957 50 0.0013387835770581862 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4780459.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.32833859349399 #Duplication Level Percentage of deduplicated Percentage of total 1 55.30148084909926 17.325035167622048 2 15.74222610934716 9.863555795379387 3 8.322572523343249 7.821971099406208 4 5.10605560628164 6.398569556431976 5 3.398793089831225 5.3239270363730125 6 2.351634132201919 4.420367420498347 7 1.7903968741518665 3.9263111643114037 8 1.2883560605549242 3.228964391523577 9 1.034041669702451 2.9155326793398237 >10 5.334462418886671 28.647558927839757 >50 0.23509246205338716 5.043445151448641 >100 0.09361164648632948 4.7725680308347975 >500 0.0010078091636830703 0.19985698174080102 >1k 2.6874889622240545E-4 0.11233659725020118 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.091849339153416E-4 2 0.0 0.0 0.0 0.0 2.091849339153416E-4 3 0.0 0.0 0.0 0.0 2.091849339153416E-4 4 0.0 0.0 0.0 0.0 2.510219206984099E-4 5 0.0 0.0 0.0 0.0 2.510219206984099E-4 6 0.0 0.0 0.0 0.0 3.137774008730124E-4 7 0.0 0.0 0.0 0.0 3.3469589426454656E-4 8 0.0 0.0 0.0 2.091849339153416E-5 3.3469589426454656E-4 9 0.0 0.0 0.0 2.091849339153416E-5 3.9745137443914907E-4 10 0.0 0.0 0.0 2.091849339153416E-5 4.3928836122221737E-4 11 0.0 0.0 0.0 2.091849339153416E-5 4.3928836122221737E-4 12 0.0 0.0 0.0 2.091849339153416E-5 0.0012132726167089812 13 0.0 0.0 0.0 2.091849339153416E-5 0.0013387835770581862 14 0.0 0.0 0.0 4.183698678306832E-5 0.0013597020704497205 15 0.0 0.0 0.0 1.4642945374073913E-4 0.0016316424845396645 16 0.0 0.0 0.0 2.091849339153416E-4 0.0016525609779311987 17 0.0 0.0 0.0 2.9285890748147826E-4 0.0016734794713227329 18 0.0 0.0 0.0 4.183698678306832E-4 0.0017989904316719379 19 0.0 0.0 0.0 5.22962334788354E-4 0.0017989904316719379 20 0.0 0.0 0.0 8.785767224444347E-4 0.0019245013920211427 21 0.0 0.0 0.0 0.0011295986431428446 0.001987256872195745 22 0.0 0.0 0.0 0.001840827418455006 0.0021336863259364845 23 0.0 0.0 0.0 0.0026775671541163725 0.002342871259851826 24 0.0 0.0 0.0 0.003535225383169273 0.002342871259851826 25 0.0 0.0 0.0 0.004706661013095186 0.002342871259851826 26 0.0 0.0 0.0 0.006003607603370304 0.0024474637268094967 27 0.0 0.0 0.0 0.00684034733903167 0.002489300713592565 28 0.0 0.0 0.0 0.008158212422698322 0.002489300713592565 29 0.0 0.0 0.0 0.010522002175941682 0.002489300713592565 30 0.0 0.0 0.0 0.01393171659876175 0.002489300713592565 31 0.0 0.0 0.0 0.020123590642655863 0.0025102192069840993 32 0.0 0.0 0.0 0.027424144836301283 0.0026984856475079067 33 0.0 0.0 0.0 0.03426449217533296 0.002719404140899441 34 0.0 0.0 0.0 0.04254821555838048 0.002886752088031714 35 0.0 0.0 0.0 0.05125030880925869 0.002886752088031714 36 0.0 0.0 0.0 0.06204425139929032 0.0029495075682063167 37 0.0 0.0 0.0 0.07879996460590918 0.0029495075682063167 38 0.0 0.0 0.0 0.10045060526614703 0.002991344554989385 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4035 0.0 27.10676 1 TATACCG 160 0.0 21.999603 5 GGTATCA 1970 0.0 20.890081 1 ATCAACG 5780 0.0 18.497936 3 TCAACGC 5785 0.0 18.44392 4 CAACGCA 5940 0.0 18.073748 5 TATCAAC 5980 0.0 18.064352 2 AACGCAG 6010 0.0 17.826818 6 TAGGCCG 105 3.7786922E-5 16.761602 5 GTATAAC 375 0.0 15.845182 1 GTATAGG 635 0.0 15.249082 1 AGTATCG 275 3.6379788E-12 14.39959 8 ACGCAGA 7605 0.0 14.087698 7 GTCCTAT 655 0.0 13.775498 1 GTATACG 145 3.8286533E-5 13.65964 1 AGAGTAC 8005 0.0 13.493823 11 CCTATAC 410 0.0 13.414392 3 ATGCGCG 100 0.008766501 13.199761 21 TAATACC 485 0.0 13.154402 4 TATAGGG 620 0.0 13.129619 2 >>END_MODULE