##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062307_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 997773 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.24809651092984 32.0 32.0 32.0 32.0 32.0 2 31.465757241376547 32.0 32.0 32.0 32.0 32.0 3 31.574862218159844 32.0 32.0 32.0 32.0 32.0 4 31.65511794766946 32.0 32.0 32.0 32.0 32.0 5 31.63319713000853 32.0 32.0 32.0 32.0 32.0 6 35.28100880661233 36.0 36.0 36.0 36.0 36.0 7 35.286886897119885 36.0 36.0 36.0 36.0 36.0 8 35.23720826280126 36.0 36.0 36.0 36.0 36.0 9 35.30376247904083 36.0 36.0 36.0 36.0 36.0 10 35.20680756043709 36.0 36.0 36.0 36.0 36.0 11 35.31449437898199 36.0 36.0 36.0 36.0 36.0 12 35.24383502059086 36.0 36.0 36.0 36.0 36.0 13 35.27332168739783 36.0 36.0 36.0 36.0 36.0 14 35.233112140737425 36.0 36.0 36.0 36.0 36.0 15 35.219841587214724 36.0 36.0 36.0 36.0 36.0 16 35.225197514865606 36.0 36.0 36.0 36.0 36.0 17 35.20624129937371 36.0 36.0 36.0 36.0 36.0 18 35.20545254281284 36.0 36.0 36.0 36.0 36.0 19 35.191507487173936 36.0 36.0 36.0 36.0 36.0 20 35.19216795804256 36.0 36.0 36.0 36.0 36.0 21 35.18150922103525 36.0 36.0 36.0 36.0 36.0 22 35.170454602399545 36.0 36.0 36.0 36.0 36.0 23 35.13620833596419 36.0 36.0 36.0 36.0 36.0 24 35.125040465115816 36.0 36.0 36.0 36.0 36.0 25 35.10240806275576 36.0 36.0 36.0 36.0 36.0 26 35.07247339825792 36.0 36.0 36.0 36.0 36.0 27 35.05352319615784 36.0 36.0 36.0 36.0 36.0 28 35.03455996504215 36.0 36.0 36.0 36.0 36.0 29 35.015883372270046 36.0 36.0 36.0 36.0 36.0 30 34.98874493497018 36.0 36.0 36.0 36.0 36.0 31 34.99529151420213 36.0 36.0 36.0 36.0 36.0 32 34.96877045179615 36.0 36.0 36.0 36.0 36.0 33 34.94662814086972 36.0 36.0 36.0 36.0 36.0 34 34.93966964429785 36.0 36.0 36.0 36.0 36.0 35 34.92710867101034 36.0 36.0 36.0 36.0 36.0 36 34.902775480996176 36.0 36.0 36.0 36.0 36.0 37 34.8887612713513 36.0 36.0 36.0 32.0 36.0 38 34.87631054358055 36.0 36.0 36.0 32.0 36.0 39 34.85530977486863 36.0 36.0 36.0 32.0 36.0 40 34.850836813583854 36.0 36.0 36.0 32.0 36.0 41 34.8242636351154 36.0 36.0 36.0 32.0 36.0 42 34.79022182400205 36.0 36.0 36.0 32.0 36.0 43 34.78308392790745 36.0 36.0 36.0 32.0 36.0 44 34.73742825271881 36.0 36.0 36.0 32.0 36.0 45 34.722802681571864 36.0 36.0 36.0 32.0 36.0 46 34.69551491170837 36.0 36.0 36.0 32.0 36.0 47 34.671672815359805 36.0 36.0 36.0 32.0 36.0 48 34.6349229734619 36.0 36.0 36.0 32.0 36.0 49 34.625615245150954 36.0 36.0 36.0 32.0 36.0 50 34.23025076846136 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 6.0 20 9.0 21 43.0 22 137.0 23 245.0 24 551.0 25 1310.0 26 2657.0 27 4851.0 28 8187.0 29 12660.0 30 18445.0 31 26751.0 32 39939.0 33 67258.0 34 152504.0 35 662219.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.55828893732293 17.512647098335577 11.808570151043348 26.12049381329815 2 16.6502292221681 19.266589290403537 36.829297138882374 27.253884348545988 3 19.571483551286473 22.258581153133793 27.87982777559513 30.290107519984605 4 13.12823658287005 15.331543347033843 33.950006664842604 37.5902134052535 5 15.136809675146552 36.114426828547174 32.58596895285801 16.162794543448257 6 36.12408446017727 33.7862758225326 15.860136383863246 14.229503333426873 7 31.844217071418047 29.491677966832135 19.077385337145824 19.586719624603994 8 28.664034805511875 33.06202913889231 18.35437519355605 19.919560862039763 9 27.097746681860503 14.436349750895245 18.279007349367042 40.18689621787721 10 17.440540082764315 26.249457541945915 29.85578884175058 26.45421353353919 11 37.84748635210614 21.037951518030653 21.161727166399572 19.952834963463633 12 24.98935128531239 23.22752770419725 27.71862938764629 24.064491622844074 13 30.03288323095534 18.982874862318383 24.665029019626708 26.319212887099567 14 23.77063720906459 19.098432208528394 24.347922824129338 32.783007758277684 15 25.60752796477756 26.702466392656444 21.575147854271464 26.114857788294533 16 26.23926604180531 25.49560619302283 23.14546066821145 25.119667096960413 17 24.61722255462916 25.836337523665204 24.48803485361901 25.058405068086632 18 25.25707275810506 24.71095600999026 25.449100596128172 24.58287063577651 19 26.165871395597996 24.531531721142986 24.749617397945222 24.552979485313795 20 26.298519399742027 24.00159956543135 24.572973157167326 25.126907877659306 21 26.748669286501038 23.84279791094768 24.36646411558541 25.042068686965873 22 26.450805944839157 23.801205284167843 24.714138386186036 25.033850384806968 23 24.940642811541302 23.99172958177862 25.224274459220688 25.843353147459393 24 25.09583939272152 24.333333667414006 25.15176449718019 25.419062442684286 25 25.301071992687678 23.989845334787248 25.10593645015675 25.603146222368327 26 24.863570626066757 24.982235367104007 25.40257314067685 24.751620866152386 27 25.46816854769281 24.3726265846572 24.874846031804893 25.2843588358451 28 25.159558048260294 24.29231194801134 25.21107364926896 25.33705635445941 29 24.920171983523257 24.51937821341592 25.105785902562715 25.454663900498108 30 24.905488672672092 24.612934521590276 25.30007095866357 25.18150584707406 31 25.525747943662306 24.273353852444803 24.624637566410662 25.576260637482225 32 25.470603209983945 24.44911712412379 24.39780228150601 25.682477384386253 33 24.92598494643054 24.2806458402237 25.04605269751546 25.747316515830303 34 25.577889850145525 24.41319024061706 25.0505127444456 24.958407164791815 35 25.82746942935804 24.282625973294472 25.249380869959136 24.64052372738835 36 24.76267123150379 24.649118235428535 24.98376382580389 25.604446707263783 37 25.74577052597819 24.28159076330981 24.923528704297627 25.049110006414367 38 25.072135646083826 24.34371344985282 24.9304200454412 25.653730858622154 39 25.808979834009676 24.145969658307685 24.58865729442386 25.45639321325878 40 25.95800848489586 24.312744481961328 24.82638836689307 24.902858666249738 41 24.95026403907117 24.64758877054709 25.393252345983893 25.00889484439785 42 25.96501074934727 24.710268758738543 24.795862628854355 24.52885786305983 43 25.53155237146425 23.990767115214613 24.909144484824676 25.568536028496457 44 24.993309846803008 24.56904889574887 24.8274341383233 25.610207119124816 45 25.184613534316867 24.64239897370109 24.80265795381655 25.370329538165493 46 25.07479320992913 24.497394640546588 24.811601291304143 25.61621085822014 47 25.32755643351604 24.40269120947075 25.180628343090124 25.08912401392309 48 25.72666508309254 24.93888706811273 24.16383778187369 25.17061006692104 49 25.321475892565417 24.984414808637904 24.332041750272115 25.36206754852457 50 25.29215442591405 25.15204057087877 24.450469050673508 25.105335952533675 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 187.0 1 125.0 2 63.0 3 148.5 4 234.0 5 238.5 6 243.0 7 190.5 8 138.0 9 192.5 10 247.0 11 421.0 12 595.0 13 1106.0 14 1617.0 15 2013.5 16 2410.0 17 2325.0 18 2240.0 19 2067.5 20 1895.0 21 2061.0 22 2227.0 23 2575.0 24 2923.0 25 3583.5 26 4244.0 27 5516.5 28 6789.0 29 8225.0 30 9661.0 31 11267.0 32 12873.0 33 15247.0 34 17621.0 35 20600.5 36 23580.0 37 27358.5 38 31137.0 39 34697.0 40 38257.0 41 41983.5 42 45710.0 43 48807.5 44 51905.0 45 57223.5 46 62542.0 47 66968.5 48 71395.0 49 75374.0 50 79353.0 51 78354.5 52 77356.0 53 78285.5 54 79215.0 55 78696.0 56 78177.0 57 76222.0 58 74267.0 59 68647.0 60 63027.0 61 55532.0 62 48037.0 63 41537.0 64 35037.0 65 29611.5 66 24186.0 67 20577.5 68 16969.0 69 14662.5 70 12356.0 71 9619.5 72 6883.0 73 5919.0 74 4955.0 75 3726.0 76 2497.0 77 2130.0 78 1763.0 79 1529.5 80 1296.0 81 1032.0 82 768.0 83 625.5 84 483.0 85 371.5 86 260.0 87 170.5 88 81.0 89 55.0 90 29.0 91 22.5 92 16.0 93 14.5 94 13.0 95 10.0 96 7.0 97 6.5 98 6.0 99 4.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03116941428561406 2 0.005111383050052467 3 5.011159852992615E-4 4 0.0 5 0.0 6 1.0022319705985229E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 5.011159852992615E-4 17 0.0 18 1.0022319705985229E-4 19 0.0 20 2.0044639411970458E-4 21 0.0 22 0.0 23 0.0 24 0.001002231970598523 25 5.011159852992615E-4 26 4.0089278823940915E-4 27 2.0044639411970458E-4 28 0.001703794350017489 29 3.0066959117955685E-4 30 9.020087735386707E-4 31 4.0089278823940915E-4 32 0.0011024551676583753 33 3.0066959117955685E-4 34 5.011159852992615E-4 35 2.0044639411970458E-4 36 1.0022319705985229E-4 37 0.0013029015617780798 38 0.0 39 4.0089278823940915E-4 40 0.0 41 4.0089278823940915E-4 42 0.0038084814882743873 43 0.00350781189709483 44 0.0038084814882743873 45 0.0013029015617780798 46 0.0022049103353167505 47 6.013391823591137E-4 48 0.0030066959117955685 49 0.003106919108855421 50 0.0013029015617780798 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 997773.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.571222944077796 #Duplication Level Percentage of deduplicated Percentage of total 1 76.25058052638911 43.89839171100105 2 14.297909430270861 16.46296262888712 3 4.331474545234487 7.481048601608779 4 1.7309316431277793 3.986074061098731 5 0.9032742941171839 2.600130288313744 6 0.5502780025510137 1.900810653965173 7 0.37851333911811885 1.525403308357358 8 0.2642998758934959 1.2172853663325236 9 0.20554043968059166 1.0649893029187603 >10 0.9636038621015471 9.804758724848712 >50 0.07038263945139325 2.7883074045022944 >100 0.04901050228362382 5.517527132202194 >500 0.004025862290034451 1.6279591254178833 >1k 1.750374908710631E-4 0.12435169054569285 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1234 0.12367542517185773 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 1.0022319705985229E-4 0.0 0.0 0.0 6 0.0 1.0022319705985229E-4 0.0 0.0 0.0 7 0.0 1.0022319705985229E-4 0.0 1.0022319705985229E-4 0.0 8 1.0022319705985229E-4 1.0022319705985229E-4 0.0 1.0022319705985229E-4 0.0 9 1.0022319705985229E-4 1.0022319705985229E-4 0.0 1.0022319705985229E-4 0.0 10 1.0022319705985229E-4 1.0022319705985229E-4 0.0 1.0022319705985229E-4 0.0 11 1.0022319705985229E-4 1.0022319705985229E-4 0.0 1.0022319705985229E-4 0.0 12 1.0022319705985229E-4 1.0022319705985229E-4 0.0 1.0022319705985229E-4 1.0022319705985229E-4 13 1.0022319705985229E-4 1.0022319705985229E-4 0.0 2.0044639411970458E-4 3.0066959117955685E-4 14 1.0022319705985229E-4 1.0022319705985229E-4 0.0 2.0044639411970458E-4 3.0066959117955685E-4 15 1.0022319705985229E-4 1.0022319705985229E-4 0.0 2.0044639411970458E-4 4.0089278823940915E-4 16 1.0022319705985229E-4 1.0022319705985229E-4 0.0 3.0066959117955685E-4 4.0089278823940915E-4 17 1.0022319705985229E-4 1.0022319705985229E-4 0.0 3.0066959117955685E-4 4.0089278823940915E-4 18 1.0022319705985229E-4 1.0022319705985229E-4 0.0 5.011159852992615E-4 4.0089278823940915E-4 19 1.0022319705985229E-4 1.0022319705985229E-4 0.0 5.011159852992615E-4 4.0089278823940915E-4 20 1.0022319705985229E-4 1.0022319705985229E-4 0.0 8.017855764788183E-4 6.013391823591137E-4 21 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.001002231970598523 7.015623794189661E-4 22 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.0011024551676583753 7.015623794189661E-4 23 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.0016035711529576366 7.015623794189661E-4 24 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.0016035711529576366 7.015623794189661E-4 25 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.0019042407441371935 7.015623794189661E-4 26 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.0028062495176758642 8.017855764788183E-4 27 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.0033073655029751256 8.017855764788183E-4 28 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.004510043867693353 8.017855764788183E-4 29 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.006915400597129808 8.017855764788183E-4 30 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.012127006844242127 8.017855764788183E-4 31 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.02275066573258647 9.020087735386707E-4 32 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.033975663803289924 0.0011024551676583753 33 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.043997983509275154 0.0011024551676583753 34 1.0022319705985229E-4 1.0022319705985229E-4 0.0 0.05472186559467935 0.0012026783647182274 35 1.0022319705985229E-4 2.0044639411970458E-4 0.0 0.06724976522716089 0.0012026783647182274 36 1.0022319705985229E-4 2.0044639411970458E-4 0.0 0.085490387092054 0.0012026783647182274 37 1.0022319705985229E-4 2.0044639411970458E-4 0.0 0.11124774873643604 0.0012026783647182274 38 1.0022319705985229E-4 2.0044639411970458E-4 0.0 0.1485307780427011 0.0012026783647182274 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 670 0.0 25.945883 1 GTATCAA 1420 0.0 24.949032 1 TAAACGC 170 0.0 20.70619 28 CGTCTTA 80 8.9890054E-5 19.24932 15 GTAAACG 185 1.8189894E-12 19.02731 27 GTATAGG 70 8.110217E-4 18.861202 1 ATACCGT 285 0.0 18.525661 6 CGCAATA 205 0.0 18.243258 36 CTTAGAC 145 6.3064363E-9 18.206253 3 ACCGTCG 295 0.0 17.897673 8 TAAGACT 150 9.59335E-9 17.59938 4 CCGTCGT 275 0.0 17.599377 9 CGTCGTA 290 0.0 17.44766 10 TACCGTC 295 0.0 17.151937 7 TAGGACG 220 1.8189894E-12 16.999401 4 CGAGCCG 300 0.0 16.866072 15 GTCCTAA 170 2.4592737E-9 16.827152 1 CTAGATA 170 2.4665496E-9 16.822935 3 CGCGGGA 210 9.094947E-12 16.762993 44 TACGAAT 210 9.094947E-12 16.762154 41 >>END_MODULE