##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062301_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1557621 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.15953174745333 32.0 32.0 32.0 32.0 32.0 2 31.16622914046485 32.0 32.0 32.0 32.0 32.0 3 31.41014983747651 32.0 32.0 32.0 32.0 32.0 4 31.539855972666007 32.0 32.0 32.0 32.0 32.0 5 31.471961407813584 32.0 32.0 32.0 32.0 32.0 6 35.100557837882256 36.0 36.0 36.0 36.0 36.0 7 35.108577118567354 36.0 36.0 36.0 36.0 36.0 8 35.050669578799976 36.0 36.0 36.0 36.0 36.0 9 35.18885338602908 36.0 36.0 36.0 36.0 36.0 10 35.019147790123526 36.0 36.0 36.0 36.0 36.0 11 35.18353437710457 36.0 36.0 36.0 36.0 36.0 12 35.093113793406744 36.0 36.0 36.0 36.0 36.0 13 35.13387788171834 36.0 36.0 36.0 36.0 36.0 14 35.09004757896818 36.0 36.0 36.0 36.0 36.0 15 35.04838468407912 36.0 36.0 36.0 36.0 36.0 16 35.07651604594442 36.0 36.0 36.0 36.0 36.0 17 35.05902462794223 36.0 36.0 36.0 36.0 36.0 18 35.05169550230769 36.0 36.0 36.0 36.0 36.0 19 35.04404344830996 36.0 36.0 36.0 36.0 36.0 20 35.04956533071909 36.0 36.0 36.0 36.0 36.0 21 35.040630551334374 36.0 36.0 36.0 36.0 36.0 22 35.014844432631556 36.0 36.0 36.0 36.0 36.0 23 34.98979340930817 36.0 36.0 36.0 36.0 36.0 24 34.970276466483185 36.0 36.0 36.0 32.0 36.0 25 34.95369476913832 36.0 36.0 36.0 32.0 36.0 26 34.90718217075913 36.0 36.0 36.0 32.0 36.0 27 34.88794449997785 36.0 36.0 36.0 32.0 36.0 28 34.8716433586861 36.0 36.0 36.0 32.0 36.0 29 34.85643811941416 36.0 36.0 36.0 32.0 36.0 30 34.831374255996806 36.0 36.0 36.0 32.0 36.0 31 34.83344728916726 36.0 36.0 36.0 32.0 36.0 32 34.80211039784389 36.0 36.0 36.0 32.0 36.0 33 34.77345451814016 36.0 36.0 36.0 32.0 36.0 34 34.76981756152492 36.0 36.0 36.0 32.0 36.0 35 34.758738486448244 36.0 36.0 36.0 32.0 36.0 36 34.73433267784654 36.0 36.0 36.0 32.0 36.0 37 34.72624277664464 36.0 36.0 36.0 32.0 36.0 38 34.709381165251365 36.0 36.0 36.0 32.0 36.0 39 34.69275837960582 36.0 36.0 36.0 32.0 36.0 40 34.673719730280986 36.0 36.0 36.0 32.0 36.0 41 34.65045540603266 36.0 36.0 36.0 32.0 36.0 42 34.61997880100487 36.0 36.0 36.0 32.0 36.0 43 34.60625145654816 36.0 36.0 36.0 32.0 36.0 44 34.584097158423006 36.0 36.0 36.0 32.0 36.0 45 34.553659715681796 36.0 36.0 36.0 32.0 36.0 46 34.542460585726566 36.0 36.0 36.0 32.0 36.0 47 34.50645246821916 36.0 36.0 36.0 32.0 36.0 48 34.4910064771854 36.0 36.0 36.0 32.0 36.0 49 34.46166236844521 36.0 36.0 36.0 32.0 36.0 50 33.99082382684877 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 3.0 20 12.0 21 31.0 22 71.0 23 221.0 24 634.0 25 1610.0 26 3638.0 27 6993.0 28 12388.0 29 20787.0 30 32588.0 31 50366.0 32 79475.0 33 140395.0 34 313705.0 35 894702.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.48884297971784 17.94775302293054 12.251048529361713 26.31235546798991 2 16.114743941626458 19.468140771914957 37.58069538475367 26.836419901704918 3 18.801966334514407 22.89796156826541 28.552361007409388 29.747711089810796 4 13.169579229850669 15.827095183677661 34.352730447734366 36.6505951387373 5 14.788459316136157 36.5144258548298 33.30119027747461 15.395924551559432 6 35.60421386744769 34.25555286626575 16.052898687034507 14.087334579252051 7 30.877536961815487 30.012692432883227 19.819070235955987 19.290700369345302 8 28.243199083730897 34.226875472274706 18.327564921120093 19.202360522874308 9 26.94878921123945 14.710382050575847 18.527035780847847 39.813792957336865 10 16.963369137935352 27.450387481935596 31.138576072099696 24.44766730802936 11 36.94666417568844 21.393137354979164 21.533928985292313 20.126269484040087 12 23.765922519020993 23.713727537058116 28.911461774077264 23.608888169843627 13 30.148027023261758 19.688807482693157 24.615551536606144 25.54761395743894 14 23.185807073736164 18.928673920035745 25.376006101612653 32.509512904615434 15 25.390900610610668 26.790856055484614 21.905778106484185 25.912465227420533 16 25.519319267393247 25.869854957832995 23.417196536245132 25.193629238528626 17 24.08808047657293 26.076112224989263 25.027846953784007 24.8079603446538 18 24.58057806140137 25.677700594496734 25.27689680409856 24.464824540003338 19 25.724614652730025 25.26262807191223 24.9789261957819 24.03383107957584 20 25.805461679900567 24.68349066778975 25.1020790746885 24.408968577621184 21 25.79677598080663 24.644377547554893 24.847828836411427 24.711017635227055 22 25.8813279995583 24.368829131091584 24.944065340670164 24.805777528679954 23 25.08504957239277 24.571445813840466 25.13249371958904 25.211010894177722 24 24.80381765105062 24.858837948211583 25.085724447822844 25.25161995291495 25 25.12893109016028 24.499443058778965 25.333602976345244 25.03802287471551 26 24.85580528191801 24.91332908752863 25.11530441392487 25.11556121662849 27 25.08434380041769 25.1376304640498 24.818038883856257 24.95998685167625 28 25.434128315027436 24.53466991610191 25.00442988076559 25.026771888105063 29 24.94732327778256 25.09671844243824 24.949377702049418 25.006580577729785 30 25.125336815607056 24.93331099131165 24.908721927217652 25.032630265863638 31 25.100377885663583 24.889221591485438 24.852498757715328 25.157901765135648 32 25.098596631118593 25.13583319048619 24.825357326517757 24.94021285187746 33 25.12854555574887 24.976197645252142 24.724916683733316 25.17034011526567 34 25.08604545305716 24.869687925131306 25.204688987658635 24.839577634152903 35 25.27850181687446 24.849706603664565 25.217703932923307 24.65408764653767 36 25.22828140678999 24.861053776377634 25.07978533875786 24.830879478074518 37 25.324475215589192 24.763802073970588 24.96411126918988 24.947611441250338 38 25.271616137686898 24.973469155847283 25.01115483163106 24.743759874834765 39 25.31245004362456 24.975844387134384 24.862979091671917 24.848726477569148 40 25.53714928085844 24.81341738458842 24.689831480186772 24.95960185436637 41 24.958477972941825 25.056063564172476 24.91873752493408 25.066720937951615 42 25.131023501728684 24.881014673733343 25.106369318382455 24.88159250615552 43 25.16907834166473 24.6529512147831 24.93313267786451 25.244837765687656 44 24.88886434901859 24.999807390552892 25.169753126051326 24.941575134377192 45 25.071970436265396 24.898304040103135 24.95159169585717 25.078133827774295 46 25.18822407765868 24.87427652423463 24.831774830908103 25.10572456719858 47 25.01298476176413 25.13959020156074 25.05953087933641 24.78789415733872 48 24.985185304078456 25.2425725887999 24.77318909201804 24.999053015103605 49 25.101183383325797 24.96423912150224 24.878207564613554 25.056369930558407 50 24.959135902496275 25.18384028782706 24.780913224302488 25.076110585374185 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 17.0 1 23.5 2 30.0 3 86.5 4 143.0 5 167.5 6 192.0 7 165.0 8 138.0 9 180.5 10 223.0 11 365.5 12 508.0 13 996.5 14 1485.0 15 1843.5 16 2202.0 17 2273.0 18 2344.0 19 2414.0 20 2484.0 21 3027.5 22 3571.0 23 4603.5 24 5636.0 25 6983.0 26 8330.0 27 10207.5 28 12085.0 29 14643.5 30 17202.0 31 20608.5 32 24015.0 33 27594.0 34 31173.0 35 36233.5 36 41294.0 37 46474.5 38 51655.0 39 58172.0 40 64689.0 41 70758.0 42 76827.0 43 81573.0 44 86319.0 45 93639.0 46 100959.0 47 106443.0 48 111927.0 49 116937.5 50 121948.0 51 125898.0 52 129848.0 53 130288.5 54 130729.0 55 127690.5 56 124652.0 57 118513.0 58 112374.0 59 102141.5 60 91909.0 61 79769.0 62 67629.0 63 57727.5 64 47826.0 65 40322.0 66 32818.0 67 26824.0 68 20830.0 69 16925.5 70 13021.0 71 10151.5 72 7282.0 73 5959.5 74 4637.0 75 3735.5 76 2834.0 77 2323.0 78 1812.0 79 1448.5 80 1085.0 81 798.5 82 512.0 83 369.5 84 227.0 85 154.5 86 82.0 87 60.0 88 38.0 89 28.5 90 19.0 91 21.0 92 23.0 93 18.5 94 14.0 95 13.5 96 13.0 97 11.5 98 10.0 99 5.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.02824820672037678 2 0.0042372310080565165 3 1.2840093963807628E-4 4 6.420046981903814E-5 5 6.420046981903814E-5 6 1.2840093963807628E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 3.2100234909519066E-4 17 0.0 18 6.420046981903814E-5 19 0.0 20 3.2100234909519066E-4 21 0.0 22 0.0 23 0.0 24 8.988065774665339E-4 25 3.852028189142288E-4 26 3.2100234909519066E-4 27 5.136037585523051E-4 28 0.0010914079869236482 29 4.4940328873326697E-4 30 0.0011556084567426864 31 4.4940328873326697E-4 32 7.704056378284576E-4 33 1.2840093963807628E-4 34 8.988065774665339E-4 35 6.420046981903814E-5 36 2.5680187927615256E-4 37 0.0018618136247521059 38 0.0 39 7.704056378284576E-4 40 0.0 41 8.988065774665339E-4 42 0.004879235706246899 43 0.00378782771932325 44 0.004173030538237478 45 0.002375417383304411 46 0.002311216913485373 47 0.0016692122152949915 48 0.002953221611675754 49 0.003402624900409021 50 0.0012198089265617247 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1557621.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.03294751151507 #Duplication Level Percentage of deduplicated Percentage of total 1 64.19658593311243 29.551580706774317 2 16.639236037727915 15.319061583128782 3 7.429540456150119 10.260109375579084 4 3.7845270077796562 6.968517324201283 5 2.203803635681284 5.072378854350131 6 1.3804214746308674 3.8126921571270573 7 0.9187439588324589 2.96047447034193 8 0.6517643476087143 2.400210720267905 9 0.4810731174400331 1.9930692207886174 >10 2.2077349055927242 17.33223594583258 >50 0.08272128334617022 2.5809279779859366 >100 0.02356729611383228 1.6603428794263193 >500 2.805459836187579E-4 0.0883987841959548 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.926014094571144E-4 2 0.0 0.0 0.0 0.0 1.926014094571144E-4 3 0.0 0.0 0.0 0.0 1.926014094571144E-4 4 0.0 0.0 0.0 0.0 1.926014094571144E-4 5 0.0 0.0 0.0 0.0 1.926014094571144E-4 6 0.0 0.0 0.0 0.0 1.926014094571144E-4 7 0.0 0.0 0.0 0.0 1.926014094571144E-4 8 6.420046981903814E-5 0.0 0.0 0.0 1.926014094571144E-4 9 6.420046981903814E-5 0.0 0.0 0.0 1.926014094571144E-4 10 6.420046981903814E-5 0.0 0.0 0.0 1.926014094571144E-4 11 6.420046981903814E-5 0.0 0.0 0.0 1.926014094571144E-4 12 6.420046981903814E-5 0.0 0.0 0.0 2.5680187927615256E-4 13 6.420046981903814E-5 0.0 0.0 0.0 3.852028189142288E-4 14 6.420046981903814E-5 0.0 0.0 0.0 3.852028189142288E-4 15 6.420046981903814E-5 0.0 0.0 6.420046981903814E-5 4.4940328873326697E-4 16 6.420046981903814E-5 0.0 0.0 2.5680187927615256E-4 4.4940328873326697E-4 17 6.420046981903814E-5 0.0 0.0 2.5680187927615256E-4 4.4940328873326697E-4 18 6.420046981903814E-5 0.0 0.0 2.5680187927615256E-4 4.4940328873326697E-4 19 6.420046981903814E-5 0.0 0.0 2.5680187927615256E-4 4.4940328873326697E-4 20 6.420046981903814E-5 0.0 0.0 3.852028189142288E-4 5.136037585523051E-4 21 6.420046981903814E-5 0.0 0.0 5.136037585523051E-4 5.778042283713432E-4 22 6.420046981903814E-5 0.0 0.0 6.420046981903813E-4 5.778042283713432E-4 23 6.420046981903814E-5 0.0 0.0 8.346061076474957E-4 5.778042283713432E-4 24 6.420046981903814E-5 0.0 0.0 0.0013482098661998009 5.778042283713432E-4 25 6.420046981903814E-5 0.0 0.0 0.0017976131549330679 5.778042283713432E-4 26 6.420046981903814E-5 0.0 0.0 0.0025680187927615253 5.778042283713432E-4 27 6.420046981903814E-5 0.0 0.0 0.0031458230211328687 5.778042283713432E-4 28 6.420046981903814E-5 0.0 0.0 0.0037236272495042117 5.778042283713432E-4 29 6.420046981903814E-5 0.0 0.0 0.004301431477875555 5.778042283713432E-4 30 6.420046981903814E-5 0.0 0.0 0.006355846512084776 5.778042283713432E-4 31 6.420046981903814E-5 0.0 0.0 0.009951072821950912 5.778042283713432E-4 32 6.420046981903814E-5 0.0 0.0 0.0138031010110932 7.062051680094195E-4 33 6.420046981903814E-5 0.0 0.0 0.0178477306096926 7.062051680094195E-4 34 6.420046981903814E-5 0.0 0.0 0.02202076114793008 7.062051680094195E-4 35 6.420046981903814E-5 0.0 0.0 0.02715679873345313 7.062051680094195E-4 36 6.420046981903814E-5 0.0 0.0 0.034475652292823476 7.062051680094195E-4 37 6.420046981903814E-5 0.0 0.0 0.04551813310169804 7.062051680094195E-4 38 6.420046981903814E-5 0.0 0.0 0.0592570336429722 7.062051680094195E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1690 0.0 27.211744 1 GGTATCA 785 0.0 27.189356 1 CGTAGAC 75 5.474856E-5 20.532885 3 CGGATCG 130 3.5901394E-8 18.614979 26 CGTTATT 85 1.4303527E-4 18.118996 44 ATCGATT 135 5.5299097E-8 17.925533 29 TATCAAC 2470 0.0 17.813948 2 TCAACGC 2500 0.0 17.511616 4 CAACGCA 2530 0.0 17.303968 5 ATCAACG 2535 0.0 17.269838 3 AACGCAG 2605 0.0 16.805775 6 GGCGTTA 110 5.619334E-5 16.001192 42 ACCGTAT 85 0.0029808914 15.529072 8 GTATAGG 285 0.0 15.441233 1 AACACCG 105 7.161652E-4 14.666347 5 TAGACAG 270 1.8189894E-12 14.666346 5 CGATTTT 150 3.2525095E-6 14.666346 31 TAGACTG 245 1.0004442E-10 14.367033 5 GGATCGA 215 3.5470293E-9 14.325268 27 GTCTTAG 280 3.6379788E-12 14.145272 1 >>END_MODULE