##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062299_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2667212 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.27950159192445 32.0 32.0 32.0 32.0 32.0 2 31.476796370142306 32.0 32.0 32.0 32.0 32.0 3 31.586095893389803 32.0 32.0 32.0 32.0 32.0 4 31.66115216938136 32.0 32.0 32.0 32.0 32.0 5 31.64201720748107 32.0 32.0 32.0 32.0 32.0 6 35.295553184373794 36.0 36.0 36.0 36.0 36.0 7 35.29612756691257 36.0 36.0 36.0 36.0 36.0 8 35.2550850851001 36.0 36.0 36.0 36.0 36.0 9 35.31691369115016 36.0 36.0 36.0 36.0 36.0 10 35.217861572308465 36.0 36.0 36.0 36.0 36.0 11 35.3249318014466 36.0 36.0 36.0 36.0 36.0 12 35.25390182707636 36.0 36.0 36.0 36.0 36.0 13 35.286570771277276 36.0 36.0 36.0 36.0 36.0 14 35.250783214832566 36.0 36.0 36.0 36.0 36.0 15 35.230590219300154 36.0 36.0 36.0 36.0 36.0 16 35.24478781589165 36.0 36.0 36.0 36.0 36.0 17 35.224498465063895 36.0 36.0 36.0 36.0 36.0 18 35.21702961744323 36.0 36.0 36.0 36.0 36.0 19 35.209438169894256 36.0 36.0 36.0 36.0 36.0 20 35.21242818343649 36.0 36.0 36.0 36.0 36.0 21 35.20285714071473 36.0 36.0 36.0 36.0 36.0 22 35.19284368846571 36.0 36.0 36.0 36.0 36.0 23 35.16215771374754 36.0 36.0 36.0 36.0 36.0 24 35.147714167452754 36.0 36.0 36.0 36.0 36.0 25 35.13497614737786 36.0 36.0 36.0 36.0 36.0 26 35.09536174852243 36.0 36.0 36.0 36.0 36.0 27 35.08248838112606 36.0 36.0 36.0 36.0 36.0 28 35.06381532476608 36.0 36.0 36.0 36.0 36.0 29 35.04935003291827 36.0 36.0 36.0 36.0 36.0 30 35.028538788817684 36.0 36.0 36.0 36.0 36.0 31 35.02951471424094 36.0 36.0 36.0 36.0 36.0 32 35.00552562001071 36.0 36.0 36.0 36.0 36.0 33 34.981781725637106 36.0 36.0 36.0 36.0 36.0 34 34.977626825314225 36.0 36.0 36.0 36.0 36.0 35 34.9661470479287 36.0 36.0 36.0 36.0 36.0 36 34.94680137911797 36.0 36.0 36.0 36.0 36.0 37 34.93755614476839 36.0 36.0 36.0 36.0 36.0 38 34.923229574552 36.0 36.0 36.0 36.0 36.0 39 34.90336876108836 36.0 36.0 36.0 36.0 36.0 40 34.8910888973205 36.0 36.0 36.0 36.0 36.0 41 34.870633830381685 36.0 36.0 36.0 32.0 36.0 42 34.83854714210944 36.0 36.0 36.0 32.0 36.0 43 34.839281241986015 36.0 36.0 36.0 32.0 36.0 44 34.797511408916876 36.0 36.0 36.0 32.0 36.0 45 34.77903481238087 36.0 36.0 36.0 32.0 36.0 46 34.75792063023112 36.0 36.0 36.0 32.0 36.0 47 34.73384305409544 36.0 36.0 36.0 32.0 36.0 48 34.71203226440193 36.0 36.0 36.0 32.0 36.0 49 34.69999647572072 36.0 36.0 36.0 32.0 36.0 50 34.30386373486622 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 9.0 20 22.0 21 69.0 22 187.0 23 549.0 24 1386.0 25 3150.0 26 6448.0 27 12039.0 28 20699.0 29 32239.0 30 47216.0 31 68888.0 32 104049.0 33 174557.0 34 402909.0 35 1792793.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.81318852765812 17.21665120249267 11.670663349307562 26.29949692054165 2 16.533419019762746 19.62457945722846 37.00825131819748 26.833750204811313 3 19.428637201081884 22.94861806492347 27.70247622789725 29.920268506097404 4 13.022211957654658 15.445191458346768 34.82032924266987 36.7122673413287 5 14.957614885966986 36.395221973522894 32.74830253335883 15.898860607151294 6 35.53712346393682 34.29608789415749 16.222356861557106 13.94443178034859 7 31.384606847899605 29.837673195831453 19.492113862715073 19.285606093553866 8 28.406440882839455 33.06718776010305 18.50396593896548 20.022405418092003 9 27.093796818550608 14.721177019299553 18.050983573859146 40.1340425882907 10 16.29069937901379 26.58096909541022 30.801035839336176 26.32729568623981 11 37.545384468876115 21.22343480758185 21.715296721820387 19.51588400172165 12 25.362213427354106 23.15342762405088 27.911429612644213 23.5729293359508 13 29.611219505611103 19.337457989841077 24.84991819172979 26.201404312818028 14 23.863682376953914 19.04329314655153 24.76094888595282 32.332075590541734 15 25.403342516455385 26.622180764033754 21.983404393801468 25.991072325709393 16 26.114436905532735 25.796687836190703 22.999258772967444 25.08961648530912 17 24.48414299275798 25.84650189036342 24.5623519990162 25.107003117862398 18 25.147991888143668 25.150841310779406 25.248846452487566 24.452320348589367 19 25.776428720326695 24.769459645502494 25.091781230738313 24.362330403432498 20 26.07607228554289 24.230728854229156 24.616564187162567 25.076634673065385 21 26.601195031064286 24.10836637971274 24.604877529374317 24.68556105984866 22 26.282200290040684 24.03198545897364 24.69113816224582 24.994676088739855 23 24.776142569897917 24.161530527581057 25.30718417103109 25.755142731489933 24 24.952506142238995 24.5673437970416 25.159578237296447 25.320571823422956 25 25.190330255705785 24.125358146314905 25.197078890794337 25.48723270718497 26 24.962038870696706 24.98517172677585 25.27555093315017 24.777238469377274 27 25.416485140608025 24.60177369393094 24.787061497404398 25.194679668056637 28 25.163347109467587 24.48131411048327 25.259366377809013 25.095972402240125 29 24.983315836832634 24.75978554289142 25.238377324535094 25.018521295740854 30 24.99413237511707 24.818553542358252 25.24780873267551 24.939505349849167 31 25.41929770493229 24.594799486202373 24.72388626566157 25.26201654320377 32 25.348315365018305 24.578330418285876 24.56430819643858 25.509046020257237 33 24.842991188910347 24.464392902388155 25.033527581473802 25.659088327227696 34 25.484798608273124 24.551306806039314 25.080028044496267 24.883866541191292 35 25.649358561702513 24.383316043099732 25.21313477871438 24.754190616483374 36 24.975151909844268 24.775467370923966 24.93443516007569 25.314945559156076 37 25.650970879246543 24.609417472452076 24.818627983968025 24.920983664333356 38 25.053988959257833 24.514961690334328 25.09909223563781 25.33195711477003 39 25.61643342563994 24.526638067365077 24.596299187386915 25.260629319608068 40 25.590083116846113 24.600021970531742 24.901085741687286 24.908809170934862 41 24.863770280737825 25.004517870144788 25.208215699992426 24.923496149124958 42 25.827513623482705 24.78540249545759 24.77752873360664 24.60955514745306 43 25.48240544140965 24.258605685644685 24.973688680189703 25.28530019275596 44 25.04067156162674 24.72343525563562 24.812783337088977 25.423109845648657 45 25.109901584419976 24.91981167976862 24.81239401175558 25.15789272405582 46 25.094435902252325 24.653216369664584 24.840532207938576 25.411815520144515 47 25.21396121534694 24.702036488602793 25.02222377191868 25.061778524131583 48 25.540555994023507 25.168693513403056 24.38679996925517 24.903950523318265 49 25.104739151333543 25.115987315070814 24.450583442253052 25.328690091342587 50 25.17495102496087 25.198459043744787 24.65784959742049 24.968740333873853 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 131.0 1 104.0 2 77.0 3 212.5 4 348.0 5 394.5 6 441.0 7 373.5 8 306.0 9 427.0 10 548.0 11 892.0 12 1236.0 13 2159.0 14 3082.0 15 4064.5 16 5047.0 17 4849.5 18 4652.0 19 4460.5 20 4269.0 21 4783.5 22 5298.0 23 6121.5 24 6945.0 25 8550.0 26 10155.0 27 12953.5 28 15752.0 29 19593.0 30 23434.0 31 28403.0 32 33372.0 33 39567.5 34 45763.0 35 54336.0 36 62909.0 37 74570.0 38 86231.0 39 98008.0 40 109785.0 41 122600.0 42 135415.0 43 144407.0 44 153399.0 45 167748.0 46 182097.0 47 192019.5 48 201942.0 49 211452.0 50 220962.0 51 217837.5 52 214713.0 53 212838.5 54 210964.0 55 208886.0 56 206808.0 57 197392.5 58 187977.0 59 172696.5 60 157416.0 61 138106.0 62 118796.0 63 101820.0 64 84844.0 65 71283.5 66 57723.0 67 49201.0 68 40679.0 69 35311.5 70 29944.0 71 23056.0 72 16168.0 73 13996.5 74 11825.0 75 8804.5 76 5784.0 77 4928.0 78 4072.0 79 3348.5 80 2625.0 81 2023.0 82 1421.0 83 1200.0 84 979.0 85 771.5 86 564.0 87 374.5 88 185.0 89 124.5 90 64.0 91 43.5 92 23.0 93 20.5 94 18.0 95 14.5 96 11.0 97 9.0 98 7.0 99 6.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0312686055701609 2 0.0046115569366064636 3 3.749233281793873E-4 4 0.0 5 7.498466563587746E-5 6 1.4996933127175491E-4 7 0.0 8 0.0 9 0.0 10 1.1247699845381619E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 4.8740032663320353E-4 17 0.0 18 1.8746166408969365E-4 19 0.0 20 4.4990799381526477E-4 21 3.749233281793873E-5 22 0.0 23 3.749233281793873E-5 24 9.373083204484682E-4 25 2.2495399690763239E-4 26 3.749233281793873E-4 27 3.749233281793873E-4 28 0.0014622009798996105 29 4.4990799381526477E-4 30 0.0012747393158099168 31 5.248926594511422E-4 32 6.373696579049584E-4 33 1.8746166408969365E-4 34 8.24831321994652E-4 35 1.1247699845381619E-4 36 1.8746166408969365E-4 37 0.0015746779783534267 38 0.0 39 5.248926594511422E-4 40 1.1247699845381619E-4 41 9.748006532664071E-4 42 0.00472403393506028 43 0.0040866642771553215 44 0.004311618274062954 45 0.0019870936393507526 46 0.002212047636258385 47 8.623236548125909E-4 48 0.0036367562833400572 49 0.004124156609973261 50 0.001387216314263733 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2667212.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.61674988887663 #Duplication Level Percentage of deduplicated Percentage of total 1 72.64616475609658 37.497589166015615 2 15.302020957496318 15.79681177114872 3 5.301698642435207 8.209693584383247 4 2.297590919773397 4.743767034115899 5 1.18732067174904 3.06428170757816 6 0.7284268303222848 2.2559415307855537 7 0.487152883869038 1.760167399501917 8 0.3417998283053466 1.411407699975844 9 0.24705849920141398 1.1477121085080553 >10 1.3201568217608393 12.145703708974903 >50 0.08072668401080779 2.861008520360492 >100 0.05161331511192613 5.251501470908111 >500 0.005927472383251272 2.066870789361539 >1k 0.002341717484722878 1.7875435083820383 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 7.498466563587746E-5 7 0.0 0.0 0.0 0.0 1.1247699845381619E-4 8 0.0 0.0 0.0 0.0 1.1247699845381619E-4 9 0.0 0.0 0.0 0.0 1.1247699845381619E-4 10 0.0 0.0 0.0 0.0 1.4996933127175491E-4 11 0.0 0.0 0.0 0.0 1.4996933127175491E-4 12 0.0 0.0 0.0 3.749233281793873E-5 0.0010497853189022845 13 0.0 0.0 0.0 3.749233281793873E-5 0.001124769984538162 14 0.0 0.0 0.0 3.749233281793873E-5 0.001124769984538162 15 0.0 0.0 0.0 7.498466563587746E-5 0.001387216314263733 16 0.0 0.0 0.0 1.4996933127175491E-4 0.0014622009798996105 17 0.0 0.0 0.0 1.8746166408969365E-4 0.0015746779783534267 18 0.0 0.0 0.0 3.374309953614486E-4 0.0016496626439893042 19 0.0 0.0 0.0 4.1241566099732606E-4 0.0016496626439893042 20 0.0 0.0 0.0 5.62384992269081E-4 0.001837124308078998 21 0.0 0.0 0.0 6.748619907228972E-4 0.0019121089737148753 22 0.0 0.0 0.0 7.498466563587746E-4 0.0019870936393507526 23 0.0 0.0 0.0 8.623236548125908E-4 0.0020245859721686917 24 0.0 0.0 0.0 0.0011622623173561007 0.002099570637804569 25 0.0 0.0 0.0 0.0017621396424431204 0.002099570637804569 26 0.0 0.0 0.0 0.002511986298801895 0.002249539969076324 27 0.0 0.0 0.0 0.00326183295516067 0.0022870323018942627 28 0.0 0.0 0.0 0.004499079938152648 0.0023245246347122013 29 0.0 0.0 0.0 0.006036265583688136 0.0023245246347122013 30 0.0 0.0 0.0 0.007723420560495378 0.0023245246347122013 31 0.0 0.0 0.0 0.015559318119444573 0.002511986298801895 32 0.0 0.0 0.0 0.02508237065520101 0.0025494786316198337 33 0.0 0.0 0.0 0.034492946192503635 0.0025869709644377723 34 0.0 0.0 0.0 0.04495330704870854 0.00266195563007365 35 0.0 0.0 0.0 0.05612602222845428 0.00266195563007365 36 0.0 0.0 0.0 0.07209775600889617 0.0027369402957095274 37 0.0 0.0 0.0 0.09819241965018154 0.0027369402957095274 38 0.0 0.0 0.0 0.12979845621570388 0.002774432628527466 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3485 0.0 27.023924 1 TAATCGG 75 5.4778586E-5 20.532335 15 GGTATCA 1525 0.0 20.200665 1 TCAACGC 4885 0.0 19.274757 4 CAACGCA 4945 0.0 19.129864 5 AACGCAG 4985 0.0 19.020496 6 ATCAACG 4965 0.0 19.00814 3 TATCAAC 5010 0.0 18.926292 2 CTAGCGG 495 0.0 18.66681 29 ATACGAA 485 0.0 18.599823 40 CGCAATA 480 0.0 18.333818 36 CAATACG 500 0.0 18.041492 38 TACGAAT 505 0.0 17.863197 41 TCTAGCG 520 0.0 17.346287 28 CGAATGC 530 0.0 17.021233 43 TAGCGGC 540 0.0 16.70383 30 GTGTAGG 515 0.0 16.663446 1 AATACGA 530 0.0 16.605457 39 ACGCAGA 5940 0.0 15.888415 7 GTATAGG 420 0.0 15.717353 1 >>END_MODULE