Basic Statistics
Measure | Value |
---|---|
Filename | SRR4062298_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 683210 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 791 | 0.11577699389645937 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACTAGC | 30 | 0.005742167 | 29.334505 | 31 |
CGGATCG | 45 | 4.067907E-5 | 29.33236 | 26 |
TAGGACG | 95 | 3.274181E-11 | 27.78855 | 4 |
ATCGATT | 50 | 8.333953E-5 | 26.401054 | 29 |
TCGTCTA | 45 | 0.0013978629 | 24.443632 | 9 |
GTATCAA | 990 | 0.0 | 22.004099 | 1 |
GGTATCA | 615 | 0.0 | 21.109623 | 1 |
AACGCTT | 105 | 7.730523E-8 | 20.953217 | 30 |
TCGATTT | 65 | 4.927818E-4 | 20.308502 | 30 |
GTATAGG | 100 | 1.1199681E-6 | 19.80369 | 1 |
AACCGCG | 90 | 1.0005697E-5 | 19.556337 | 41 |
TTCGTTA | 70 | 8.116208E-4 | 18.857895 | 40 |
CGATTTT | 70 | 8.116208E-4 | 18.857895 | 31 |
CCCTCGG | 70 | 8.120203E-4 | 18.856514 | 22 |
GGATCGA | 70 | 8.120203E-4 | 18.856514 | 27 |
GTGTAAG | 130 | 3.572859E-8 | 18.618853 | 1 |
TAAACGC | 125 | 4.842823E-7 | 17.600704 | 28 |
CCTATTC | 175 | 1.9099389E-10 | 17.599415 | 3 |
CGAGCCG | 215 | 0.0 | 17.39477 | 15 |
CGCGGGA | 115 | 4.2657703E-6 | 17.218079 | 44 |