##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062290_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1132154 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.255139318502607 32.0 32.0 32.0 32.0 32.0 2 31.42336378266561 32.0 32.0 32.0 32.0 32.0 3 31.554981036148792 32.0 32.0 32.0 32.0 32.0 4 31.636078660676905 32.0 32.0 32.0 32.0 32.0 5 31.6083827818477 32.0 32.0 32.0 32.0 32.0 6 35.243640882777434 36.0 36.0 36.0 36.0 36.0 7 35.24737712360686 36.0 36.0 36.0 36.0 36.0 8 35.200057589338556 36.0 36.0 36.0 36.0 36.0 9 35.28264794365431 36.0 36.0 36.0 36.0 36.0 10 35.160479934708526 36.0 36.0 36.0 36.0 36.0 11 35.28984661097342 36.0 36.0 36.0 36.0 36.0 12 35.20190892758406 36.0 36.0 36.0 36.0 36.0 13 35.242976662185534 36.0 36.0 36.0 36.0 36.0 14 35.206939161986796 36.0 36.0 36.0 36.0 36.0 15 35.1805593585325 36.0 36.0 36.0 36.0 36.0 16 35.19729559759538 36.0 36.0 36.0 36.0 36.0 17 35.17930511220205 36.0 36.0 36.0 36.0 36.0 18 35.171049168222694 36.0 36.0 36.0 36.0 36.0 19 35.166569212315636 36.0 36.0 36.0 36.0 36.0 20 35.163122684723106 36.0 36.0 36.0 36.0 36.0 21 35.15102185745049 36.0 36.0 36.0 36.0 36.0 22 35.131747094476545 36.0 36.0 36.0 36.0 36.0 23 35.10775919177073 36.0 36.0 36.0 36.0 36.0 24 35.0907782863462 36.0 36.0 36.0 36.0 36.0 25 35.0683908726198 36.0 36.0 36.0 36.0 36.0 26 35.03303967481456 36.0 36.0 36.0 36.0 36.0 27 35.011847328190335 36.0 36.0 36.0 36.0 36.0 28 34.994524596477156 36.0 36.0 36.0 36.0 36.0 29 34.9701922176665 36.0 36.0 36.0 36.0 36.0 30 34.9514103205041 36.0 36.0 36.0 36.0 36.0 31 34.95193145102168 36.0 36.0 36.0 36.0 36.0 32 34.92280378817723 36.0 36.0 36.0 32.0 36.0 33 34.912314932420855 36.0 36.0 36.0 32.0 36.0 34 34.89963644521858 36.0 36.0 36.0 32.0 36.0 35 34.88145340651537 36.0 36.0 36.0 32.0 36.0 36 34.86183681725278 36.0 36.0 36.0 32.0 36.0 37 34.84280053773603 36.0 36.0 36.0 32.0 36.0 38 34.821090593682484 36.0 36.0 36.0 32.0 36.0 39 34.8012134391611 36.0 36.0 36.0 32.0 36.0 40 34.790617707485026 36.0 36.0 36.0 32.0 36.0 41 34.771735117307365 36.0 36.0 36.0 32.0 36.0 42 34.74587114473826 36.0 36.0 36.0 32.0 36.0 43 34.745487804662616 36.0 36.0 36.0 32.0 36.0 44 34.696640209724116 36.0 36.0 36.0 32.0 36.0 45 34.680879986291615 36.0 36.0 36.0 32.0 36.0 46 34.65268152565817 36.0 36.0 36.0 32.0 36.0 47 34.63373445661986 36.0 36.0 36.0 32.0 36.0 48 34.60872637468048 36.0 36.0 36.0 32.0 36.0 49 34.59242028911261 36.0 36.0 36.0 32.0 36.0 50 34.176781603916076 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 10.0 21 32.0 22 77.0 23 223.0 24 537.0 25 1266.0 26 2744.0 27 5259.0 28 8939.0 29 14225.0 30 21760.0 31 32109.0 32 49051.0 33 83075.0 34 187716.0 35 725129.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.21598668306544 17.555434214060533 11.692254407170221 26.536324695703804 2 16.292229117973886 19.368994557008314 37.0270948274796 27.3116814975382 3 19.031488760323278 22.586318067393897 28.2882126926644 30.093980479618427 4 12.846750530404874 15.453639699192866 34.810105339026315 36.88950443137594 5 14.746518135374048 36.50207745956373 33.14457775987677 15.606826645185452 6 35.77741465353531 34.414874354105024 16.056529611800556 13.751181380559114 7 31.27781202910558 29.7221932705268 19.727351579378777 19.272643120988842 8 28.396225248508593 33.56804816305909 18.572031720066352 19.463694868365963 9 27.061866141885293 14.256629398474061 18.330015174614054 40.351489285026595 10 16.457242490407648 26.605879775860487 31.18945159307231 25.747426140659556 11 37.647086880406725 20.93787594267211 21.774599568609922 19.640437608311238 12 24.623151974024733 23.25805499958486 28.526684532316278 23.592108494074125 13 29.853182517572698 19.13273282609963 24.922139567585326 26.091945088742346 14 23.312994521946663 19.253652771619407 24.792121919809496 32.64123078662443 15 25.08157017508219 27.42497928727011 21.74297842872966 25.750472108918043 16 25.890388695450937 25.757278654873133 23.574521307322556 24.77781134235337 17 24.30049268915713 26.141938287547458 24.882303997512707 24.67526502578271 18 24.99249217419569 25.002561493509706 25.80996191324133 24.194984419053274 19 25.745879094186837 24.916133317552205 25.020801057100005 24.317186531160957 20 25.86386444917683 24.522170629182856 24.848805503859467 24.765159417780843 21 26.228675604202255 24.299344435474328 24.582609786301155 24.88937017402226 22 25.964842238776704 24.410371733880726 24.874001240113977 24.750784787228593 23 24.5998335915432 24.462219804019593 25.362715672956153 25.57523093148105 24 24.938368875199952 24.650418367355954 25.37797920573357 25.03323355171052 25 24.981120009610024 24.460429748328625 25.356776613720257 25.201673628341098 26 24.661882856718886 25.302167906782834 25.47970590521414 24.55624333128414 27 25.2481561630526 24.898997482665724 24.968687894713597 24.884158459568077 28 24.9212337267157 24.721348022827424 25.2321474154858 25.125270834971076 29 24.755398803514378 25.02824274896679 25.157819332967655 25.058539114551177 30 24.77551402562576 24.948902169515836 25.41677634077704 24.858807464081362 31 25.29742057375739 24.71755092739396 24.79510242008354 25.18992607876511 32 25.150908098425468 24.842997281269376 24.69451819818292 25.311576422122233 33 24.63606950650663 24.784282689707133 25.36406298441995 25.21558481936629 34 25.271321253019714 24.668571605227246 25.485604759107712 24.57450238264533 35 25.47528953709396 24.739875917721296 25.318331814102702 24.466502731082045 36 24.61124953959403 24.96349874972729 25.23501682193131 25.19023488874737 37 25.461516990891553 24.727771221832008 24.93163365532056 24.87907813195588 38 24.827629456770016 24.827629456770016 25.141367693794308 25.20337339266566 39 25.485758903886957 24.62668242435163 24.869583958252733 25.017974713508686 40 25.785979645878566 24.564149400169942 25.084396645686013 24.565474308265483 41 24.800818982878383 24.90822657348587 25.498791664605662 24.79216277903008 42 25.56739988022196 24.925403720892433 25.18350949656124 24.323686902324365 43 25.098555346014724 24.579433886432795 25.23211186241559 25.08989890513689 44 24.71561548775985 24.920633798960157 25.088552717353856 25.275197995926135 45 24.8966547952175 25.219851465558662 24.935607987789364 24.947885751434466 46 24.875124875124875 24.893055662286432 25.031378877532724 25.200440585055972 47 25.00523347480645 24.92732757135854 25.226673497418595 24.840765456416417 48 25.44163618488522 25.21612547334725 24.539946665347582 24.802291676419955 49 25.102817409001293 25.18196208122222 24.621059549299357 25.09416096047713 50 24.980810422877333 25.54700231864856 24.625902616760516 24.84628464171359 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 107.0 1 72.5 2 38.0 3 113.0 4 188.0 5 179.0 6 170.0 7 152.0 8 134.0 9 171.5 10 209.0 11 376.0 12 543.0 13 939.0 14 1335.0 15 1710.5 16 2086.0 17 2067.5 18 2049.0 19 2003.0 20 1957.0 21 2358.5 22 2760.0 23 3376.0 24 3992.0 25 5173.5 26 6355.0 27 8033.0 28 9711.0 29 11619.0 30 13527.0 31 15630.5 32 17734.0 33 20949.5 34 24165.0 35 27945.0 36 31725.0 37 36249.5 38 40774.0 39 44137.0 40 47500.0 41 51306.0 42 55112.0 43 58145.0 44 61178.0 45 66204.0 46 71230.0 47 76275.5 48 81321.0 49 84822.5 50 88324.0 51 87695.5 52 87067.0 53 86284.5 54 85502.0 55 85509.0 56 85516.0 57 82133.5 58 78751.0 59 72380.5 60 66010.0 61 58384.5 62 50759.0 63 43767.0 64 36775.0 65 31024.5 66 25274.0 67 21374.0 68 17474.0 69 15480.5 70 13487.0 71 10523.0 72 7559.0 73 6687.0 74 5815.0 75 4248.0 76 2681.0 77 2404.0 78 2127.0 79 1788.0 80 1449.0 81 1108.0 82 767.0 83 622.0 84 477.0 85 368.0 86 259.0 87 175.5 88 92.0 89 63.0 90 34.0 91 29.0 92 24.0 93 17.0 94 10.0 95 9.0 96 8.0 97 8.0 98 8.0 99 6.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03197444870574144 2 0.004946323556689285 3 3.5330882547780605E-4 4 0.0 5 1.7665441273890303E-4 6 3.5330882547780605E-4 7 0.0 8 0.0 9 0.0 10 1.7665441273890303E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 7.066176509556121E-4 17 0.0 18 1.7665441273890303E-4 19 0.0 20 2.649816191083545E-4 21 0.0 22 0.0 23 0.0 24 0.0013249080955417727 25 2.649816191083545E-4 26 1.7665441273890303E-4 27 3.5330882547780605E-4 28 6.182904445861606E-4 29 4.416360318472575E-4 30 0.001059926476433418 31 2.649816191083545E-4 32 7.066176509556121E-4 33 8.832720636945151E-5 34 7.949448573250635E-4 35 1.7665441273890303E-4 36 8.832720636945151E-5 37 0.001589889714650127 38 0.0 39 7.066176509556121E-4 40 0.0 41 0.001589889714650127 42 0.005299632382167091 43 0.004328033112103124 44 0.005299632382167091 45 0.0022965073656057394 46 0.0020315257464973845 47 0.0016782169210195785 48 0.005034650763058736 49 0.004416360318472575 50 0.002561488984714094 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1132154.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.13519732402651 #Duplication Level Percentage of deduplicated Percentage of total 1 79.80525860824979 49.58715491118565 2 12.562275320874944 15.611189118026259 3 3.4195757127719215 6.374280350325957 4 1.4435954385245624 3.58792349715153 5 0.7223747109054734 2.24424476019991 6 0.46579481432237346 1.7365351620257374 7 0.3044571385451135 1.3242253066146372 8 0.22356180398932132 1.1112845443993453 9 0.15050290203804995 0.8416374764375576 >10 0.7996606327292349 8.80521356019927 >50 0.057356863984770454 2.462685396998425 >100 0.04301380256199958 5.191549529867142 >500 0.0024293476968054077 1.0268903545672776 >1k 1.4290280569443574E-4 0.09518603200139399 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.649816191083545E-4 2 0.0 0.0 0.0 0.0 2.649816191083545E-4 3 0.0 0.0 0.0 0.0 2.649816191083545E-4 4 0.0 0.0 0.0 0.0 2.649816191083545E-4 5 0.0 0.0 0.0 0.0 2.649816191083545E-4 6 0.0 0.0 0.0 0.0 2.649816191083545E-4 7 0.0 0.0 0.0 0.0 2.649816191083545E-4 8 0.0 0.0 0.0 0.0 2.649816191083545E-4 9 0.0 0.0 0.0 0.0 2.649816191083545E-4 10 0.0 0.0 0.0 0.0 2.649816191083545E-4 11 0.0 0.0 0.0 0.0 2.649816191083545E-4 12 0.0 0.0 0.0 0.0 5.29963238216709E-4 13 0.0 0.0 0.0 0.0 5.29963238216709E-4 14 0.0 0.0 0.0 8.83272063694515E-5 5.29963238216709E-4 15 0.0 0.0 0.0 1.76654412738903E-4 7.949448573250636E-4 16 0.0 0.0 0.0 1.76654412738903E-4 7.949448573250636E-4 17 0.0 0.0 0.0 3.53308825477806E-4 7.949448573250636E-4 18 0.0 0.0 0.0 5.29963238216709E-4 7.949448573250636E-4 19 0.0 0.0 0.0 6.182904445861605E-4 8.832720636945151E-4 20 0.0 0.0 0.0 0.001059926476433418 8.832720636945151E-4 21 0.0 0.0 0.0 0.0011482536828028695 9.715992700639666E-4 22 0.0 0.0 0.0 0.0013249080955417725 0.0011482536828028695 23 0.0 0.0 0.0 0.0018548713337584817 0.0011482536828028695 24 0.0 0.0 0.0 0.0019431985401279332 0.0011482536828028695 25 0.0 0.0 0.0 0.002296507365605739 0.0011482536828028695 26 0.0 0.0 0.0 0.002826470603822448 0.001236580889172321 27 0.0 0.0 0.0 0.003091452222930803 0.0013249080955417725 28 0.0 0.0 0.0 0.004151378699364221 0.0013249080955417725 29 0.0 0.0 0.0 0.006359558858600509 0.0013249080955417725 30 0.0 8.83272063694515E-5 0.0 0.009627665494270214 0.0013249080955417725 31 0.0 8.83272063694515E-5 0.0 0.01589889714650127 0.0013249080955417725 32 0.0 8.83272063694515E-5 0.0 0.02526158102166313 0.0013249080955417725 33 0.0 8.83272063694515E-5 0.0 0.0322394303248498 0.0013249080955417725 34 0.0 8.83272063694515E-5 0.0 0.042485386263706175 0.001413235301911224 35 0.0 8.83272063694515E-5 0.0 0.05273134220256255 0.001413235301911224 36 0.0 8.83272063694515E-5 0.0 0.06580376874524137 0.001413235301911224 37 0.0 8.83272063694515E-5 0.0 0.08567739017836797 0.001413235301911224 38 0.0 8.83272063694515E-5 0.0 0.11005569913633657 0.0015898897146501272 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 625 0.0 24.99825 1 GTATCAA 1390 0.0 24.063568 1 GTCCTAC 360 0.0 20.78297 1 ATTCCGA 170 5.456968E-12 19.411474 43 GTACCGT 115 2.0214429E-7 19.130146 6 GCATATA 150 9.564246E-9 17.6044 1 TAGGACG 375 0.0 17.599735 4 TATAGGG 125 4.8525726E-7 17.599733 4 TCAACGC 1890 0.0 17.460054 4 GTATAGG 140 8.346797E-8 17.290035 1 TCCTACA 535 0.0 17.272295 2 GTCCTAA 255 0.0 17.259216 1 GTATAGT 115 4.262238E-6 17.221695 1 AACGCAG 1905 0.0 17.20709 6 CAACGCA 1920 0.0 17.18724 5 GTAGGAC 540 0.0 17.110855 3 ATCAACG 1930 0.0 17.098188 3 TAGTCGC 155 1.4390025E-8 17.032001 33 ATACCGT 275 0.0 16.799747 6 CGTCGTA 250 0.0 16.719748 10 >>END_MODULE