##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062271_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 242075 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.08224723742642 32.0 32.0 32.0 21.0 32.0 2 28.65069503253124 32.0 32.0 32.0 14.0 32.0 3 30.344368480842714 32.0 32.0 32.0 21.0 32.0 4 30.93008778271197 32.0 32.0 32.0 32.0 32.0 5 30.636075596406073 32.0 32.0 32.0 32.0 32.0 6 34.23591448931116 36.0 36.0 36.0 32.0 36.0 7 34.22915625322731 36.0 36.0 36.0 32.0 36.0 8 34.071688526283175 36.0 36.0 36.0 32.0 36.0 9 34.42633481359083 36.0 36.0 36.0 32.0 36.0 10 33.944240421357016 36.0 36.0 36.0 32.0 36.0 11 34.61467313849014 36.0 36.0 36.0 32.0 36.0 12 34.25709387586492 36.0 36.0 36.0 32.0 36.0 13 34.449418568625426 36.0 36.0 36.0 32.0 36.0 14 34.302207993390475 36.0 36.0 36.0 32.0 36.0 15 34.20430032014871 36.0 36.0 36.0 32.0 36.0 16 34.25323969844057 36.0 36.0 36.0 32.0 36.0 17 34.208398223691006 36.0 36.0 36.0 32.0 36.0 18 34.23273778787566 36.0 36.0 36.0 32.0 36.0 19 34.228652277186825 36.0 36.0 36.0 32.0 36.0 20 34.25362800784881 36.0 36.0 36.0 32.0 36.0 21 34.2443870701229 36.0 36.0 36.0 32.0 36.0 22 34.20616751006919 36.0 36.0 36.0 32.0 36.0 23 34.15496437054632 36.0 36.0 36.0 32.0 36.0 24 34.08256118971393 36.0 36.0 36.0 32.0 36.0 25 34.069788288753486 36.0 36.0 36.0 32.0 36.0 26 33.985169885366105 36.0 36.0 36.0 32.0 36.0 27 33.950924300320146 36.0 36.0 36.0 32.0 36.0 28 33.88139626148921 36.0 36.0 36.0 32.0 36.0 29 33.85932872043788 36.0 36.0 36.0 32.0 36.0 30 33.826900753898585 36.0 36.0 36.0 32.0 36.0 31 33.79935144066921 36.0 36.0 36.0 32.0 36.0 32 33.79030052669627 36.0 36.0 36.0 32.0 36.0 33 33.72935660435815 36.0 36.0 36.0 32.0 36.0 34 33.69362800784881 36.0 36.0 36.0 32.0 36.0 35 33.733314055561294 36.0 36.0 36.0 32.0 36.0 36 33.62169162449654 36.0 36.0 36.0 27.0 36.0 37 33.64750593824228 36.0 36.0 36.0 27.0 36.0 38 33.568592378395124 36.0 36.0 36.0 27.0 36.0 39 33.55923164308582 36.0 36.0 36.0 27.0 36.0 40 33.524796034286894 36.0 36.0 36.0 27.0 36.0 41 33.49352886502117 36.0 36.0 36.0 21.0 36.0 42 33.4236455643912 36.0 36.0 36.0 21.0 36.0 43 33.43677372715068 36.0 36.0 36.0 21.0 36.0 44 33.30806155117216 36.0 36.0 36.0 21.0 36.0 45 33.28182588040897 36.0 36.0 36.0 21.0 36.0 46 33.25927088712176 36.0 36.0 36.0 21.0 36.0 47 33.249385521016215 36.0 36.0 36.0 21.0 36.0 48 33.18312506454611 36.0 36.0 36.0 21.0 36.0 49 33.14547970670247 36.0 36.0 36.0 21.0 36.0 50 32.52473407001962 36.0 32.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 0.0 20 4.0 21 5.0 22 23.0 23 98.0 24 221.0 25 535.0 26 1146.0 27 2206.0 28 4133.0 29 7269.0 30 11638.0 31 18688.0 32 29127.0 33 45849.0 34 67504.0 35 53628.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.92146413005309 18.96139307182252 13.299043605792072 25.818099192332323 2 18.528601349202088 20.751934365821313 34.936319809641056 25.783144475335547 3 21.525560260249925 22.979241970463697 28.465971289889495 27.02922647939688 4 15.867809563151916 16.800165238046063 35.303521635856654 32.02850356294537 5 20.327171331199008 32.33997727976867 30.407105235980588 16.92574615305174 6 35.52122276154084 36.10079520809666 14.576474233192194 13.801507797170299 7 30.418671899204792 30.13776722090261 19.189920479190334 20.25364040070226 8 28.796034286894557 32.229267788908395 17.540431684395333 21.434266239801715 9 26.062583909945264 13.39956625012909 17.511928121449962 43.02592171847568 10 16.311886811938447 25.430548383765363 29.90849943199422 28.349065372301972 11 38.46989569348342 20.0805535474543 20.971186615718267 20.478364143344006 12 24.46638438500465 22.856139626148924 27.510069193431786 25.167406795414642 13 29.483837653619744 18.2724362284416 24.36063203552618 27.883094082412473 14 24.053289269854382 18.22286481462357 24.192915418775172 33.530930496746876 15 25.70443044510999 25.652380460601055 21.14468656408138 27.49850253020758 16 26.281524320974903 25.88247443973975 22.362077868429207 25.473923370856138 17 24.329649901889912 26.082825570587627 23.98884643189094 25.59867809563152 18 25.508315639019475 24.490445070515626 25.203037087832648 24.798202202632254 19 25.76928637818858 25.183517504905506 24.67747598884643 24.369720128059484 20 26.286894557471857 23.77858101827946 23.948776205721366 25.985748218527316 21 26.832180109470205 23.7657750697098 24.168542806981307 25.233502013838688 22 25.91593514406692 24.01445832903026 24.623360528761747 25.44624599814107 23 24.555612929877103 23.957451203139524 25.211607972735724 26.275327894247653 24 24.660539089125272 24.796034286894557 24.85304141278529 25.690385211194876 25 24.936899721160795 24.038417845708974 24.954662811112257 26.07001962201797 26 24.98771042032428 24.574615305174017 24.90756996798513 25.530104306516577 27 25.438089179341855 24.290506208845226 24.65279212141742 25.6186124903955 28 24.620773984599623 24.468339998017118 25.465150864205693 25.44573515317757 29 25.079521138164363 24.81679155960574 24.864297694093544 25.239389608136353 30 25.001549119480487 24.52194172832162 25.57988705886241 24.896622093335484 31 25.403493987350924 24.658264242604503 24.642153400007434 25.29608837003714 32 25.87205459532701 24.71991804091345 23.909828480782576 25.498198882976965 33 24.613859341113294 24.56057007125891 25.236393679644735 25.589176907983063 34 25.36527935557162 24.349065372301972 25.137250852008673 25.148404420117732 35 26.233605287617472 24.16978209232676 24.83238665702778 24.764225963027986 36 24.30073324382939 24.81586285242177 24.97449137663947 25.90891252710937 37 25.903649297322307 24.40576022208085 24.920478861835637 24.770111618761206 38 25.136424661778374 24.137147578229886 25.078178250542187 25.64824950944955 39 25.413716466865505 24.75565323000405 24.143856837165494 25.68677346596495 40 25.77093875864918 25.0963544356088 24.587834348858824 24.544872456883198 41 24.649798616131363 24.763812867912836 25.312816275947537 25.273572240008264 42 25.790167266357937 25.57370006072649 24.289355514336822 24.346777158578753 43 25.371691542494084 24.126592004758972 25.11597932820807 25.38573712453887 44 25.186629595508496 24.89620213420806 24.36079105334694 25.556377216936504 45 25.26427978337113 25.620370714619146 24.288954158456335 24.82639534355339 46 24.72621668849222 25.179389517951346 24.64855352355301 25.44584027000343 47 24.976660029577733 24.69121012582929 25.2699587729372 25.062171071655776 48 26.162896376224865 25.494902258869406 23.761505031644 24.580696333261727 49 25.093878967393323 25.33967868400071 24.377548364708947 25.18889398389702 50 25.821136599290295 24.91769011827011 24.269538527634225 24.991634754805368 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5.0 1 3.5 2 2.0 3 4.5 4 7.0 5 10.0 6 13.0 7 17.0 8 21.0 9 26.0 10 31.0 11 58.0 12 85.0 13 156.0 14 227.0 15 295.0 16 363.0 17 434.0 18 505.0 19 555.5 20 606.0 21 719.0 22 832.0 23 1075.5 24 1319.0 25 1654.0 26 1989.0 27 2395.0 28 2801.0 29 3157.0 30 3513.0 31 3826.0 32 4139.0 33 4541.5 34 4944.0 35 5544.5 36 6145.0 37 7060.5 38 7976.0 39 8918.0 40 9860.0 41 10713.0 42 11566.0 43 11864.0 44 12162.0 45 12968.5 46 13775.0 47 14677.5 48 15580.0 49 15990.0 50 16400.0 51 16102.5 52 15805.0 53 16087.0 54 16369.0 55 17108.5 56 17848.0 57 17371.0 58 16894.0 59 15442.5 60 13991.0 61 12994.5 62 11998.0 63 10598.0 64 9198.0 65 7980.5 66 6763.0 67 5929.0 68 5095.0 69 4842.0 70 4589.0 71 3593.5 72 2598.0 73 2321.0 74 2044.0 75 1620.5 76 1197.0 77 1079.5 78 962.0 79 837.5 80 713.0 81 589.5 82 466.0 83 383.5 84 301.0 85 231.5 86 162.0 87 121.5 88 81.0 89 55.0 90 29.0 91 27.0 92 25.0 93 21.0 94 17.0 95 13.0 96 9.0 97 12.5 98 16.0 99 27.5 100 39.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008261902303005266 2 0.00247857069090158 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 4.130951151502634E-4 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 4.130951151502634E-4 28 0.00123928534545079 29 4.130951151502634E-4 30 8.261902303005268E-4 31 8.261902303005268E-4 32 0.00123928534545079 33 0.0 34 0.0 35 0.0 36 0.0 37 4.130951151502634E-4 38 0.0 39 4.130951151502634E-4 40 0.0 41 0.0 42 0.00247857069090158 43 0.00247857069090158 44 0.0074357120727047395 45 8.261902303005268E-4 46 0.0016523804606010536 47 4.130951151502634E-4 48 0.002891665806051843 49 0.003304760921202107 50 8.261902303005268E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 242075.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 73.99997671845559 #Duplication Level Percentage of deduplicated Percentage of total 1 89.42515827284882 66.17459630235018 2 6.672554644653632 9.87537776713983 3 1.6618553450983442 3.689317705401554 4 0.6783447060856209 2.0078996982969417 5 0.368346631768792 1.3628821087606071 6 0.21379066062108626 0.9492302345150175 7 0.16641206437925962 0.862014222281474 8 0.11828988083924619 0.7002758742506483 9 0.08677934925421242 0.5779502842009 >10 0.5279444218201201 7.331873628846475 >50 0.050886708745888985 2.574273906357646 >100 0.029637313884968312 3.8943082675987473 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 483 0.1995249406175772 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 389 0.16069399979345245 No Hit GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAG 343 0.14169162449654032 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 322 0.1330166270783848 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 285 0.11773210781782506 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 284 0.11731901270267481 No Hit CTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTC 267 0.11029639574512032 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 265 0.10947020551481977 No Hit TTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC 254 0.1049261592481669 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 253 0.10451306413301663 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.1309511515026334E-4 2 0.0 0.0 0.0 0.0 4.1309511515026334E-4 3 0.0 0.0 0.0 0.0 4.1309511515026334E-4 4 0.0 0.0 0.0 0.0 4.1309511515026334E-4 5 0.0 0.0 0.0 0.0 4.1309511515026334E-4 6 0.0 0.0 0.0 0.0 4.1309511515026334E-4 7 0.0 0.0 0.0 0.0 4.1309511515026334E-4 8 0.0 0.0 0.0 0.0 4.1309511515026334E-4 9 0.0 0.0 0.0 0.0 4.1309511515026334E-4 10 0.0 0.0 0.0 0.0 8.261902303005267E-4 11 0.0 0.0 0.0 0.0 8.261902303005267E-4 12 0.0 0.0 0.0 0.0 0.00123928534545079 13 0.0 0.0 0.0 0.0 0.0016523804606010533 14 0.0 0.0 0.0 0.0 0.0016523804606010533 15 0.0 0.0 0.0 0.0 0.0016523804606010533 16 0.0 0.0 0.0 0.0 0.0016523804606010533 17 0.0 0.0 0.0 0.0 0.0016523804606010533 18 0.0 0.0 0.0 0.0 0.0016523804606010533 19 0.0 0.0 0.0 0.0 0.0016523804606010533 20 0.0 0.0 0.0 0.0 0.00247857069090158 21 0.0 0.0 0.0 0.0 0.0028916658060518436 22 0.0 0.0 0.0 0.0 0.0028916658060518436 23 0.0 0.0 0.0 0.0 0.0028916658060518436 24 0.0 0.0 0.0 0.0 0.0028916658060518436 25 0.0 0.0 0.0 0.0 0.0028916658060518436 26 0.0 0.0 0.0 4.1309511515026334E-4 0.0033047609212021067 27 0.0 0.0 0.0 4.1309511515026334E-4 0.00371785603635237 28 0.0 0.0 0.0 8.261902303005267E-4 0.00371785603635237 29 0.0 0.0 0.0 0.00123928534545079 0.00371785603635237 30 0.0 0.0 0.0 0.0020654755757513166 0.00371785603635237 31 0.0 0.0 0.0 0.0033047609212021067 0.00371785603635237 32 0.0 0.0 0.0 0.004130951151502633 0.00371785603635237 33 0.0 0.0 0.0 0.004544046266652897 0.00371785603635237 34 0.0 0.0 0.0 0.005370236496953423 0.00371785603635237 35 0.0 0.0 0.0 0.00619642672725395 0.00371785603635237 36 0.0 0.0 0.0 0.008261902303005266 0.00371785603635237 37 0.0 0.0 0.0 0.010740472993906847 0.00371785603635237 38 0.0 0.0 0.0 0.014045233915108955 0.00371785603635237 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGTAA 30 1.2980617E-4 36.666668 30 GGTCGTA 35 3.210323E-4 31.42857 29 CGTAAAC 35 3.210323E-4 31.42857 32 TACGAAT 85 7.2759576E-12 31.058825 41 ATACGAA 85 7.2759576E-12 31.058825 40 ATTGTCG 30 0.0057360562 29.333336 43 TAGCCCT 30 0.0057360562 29.333336 4 CGAATGC 85 2.6193447E-10 28.470589 43 TTATCGG 40 7.0157857E-4 27.5 44 GTAAACC 40 7.0157857E-4 27.5 33 GTATCAA 210 0.0 27.238096 1 CGATCGC 90 5.0931703E-10 26.88889 10 GCGCAAT 100 6.002665E-11 26.4 35 CGCAATA 100 6.002665E-11 26.4 36 CAATACG 100 6.002665E-11 26.4 38 TAACGCC 105 1.10958354E-10 25.142859 4 AATACGA 105 1.10958354E-10 25.142859 39 ATAACGC 115 1.2732926E-11 24.869566 3 GCAATAC 115 1.2732926E-11 24.869566 37 AACCGCG 45 0.0013949892 24.444445 7 >>END_MODULE