##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062264_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2987441 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.300896318956593 32.0 32.0 32.0 32.0 32.0 2 31.461168605505513 32.0 32.0 32.0 32.0 32.0 3 31.58215409107661 32.0 32.0 32.0 32.0 32.0 4 31.65835609807859 32.0 32.0 32.0 32.0 32.0 5 31.629145144623777 32.0 32.0 32.0 32.0 32.0 6 35.28337329507093 36.0 36.0 36.0 36.0 36.0 7 35.291975975425125 36.0 36.0 36.0 36.0 36.0 8 35.245998163645744 36.0 36.0 36.0 36.0 36.0 9 35.34024839319002 36.0 36.0 36.0 36.0 36.0 10 35.21746337417208 36.0 36.0 36.0 36.0 36.0 11 35.332404556274085 36.0 36.0 36.0 36.0 36.0 12 35.26912431073953 36.0 36.0 36.0 36.0 36.0 13 35.287092866436524 36.0 36.0 36.0 36.0 36.0 14 35.254415066272436 36.0 36.0 36.0 36.0 36.0 15 35.23526088046592 36.0 36.0 36.0 36.0 36.0 16 35.254974742597426 36.0 36.0 36.0 36.0 36.0 17 35.23869525791471 36.0 36.0 36.0 36.0 36.0 18 35.23143252034099 36.0 36.0 36.0 36.0 36.0 19 35.22550537399734 36.0 36.0 36.0 36.0 36.0 20 35.22541968192844 36.0 36.0 36.0 36.0 36.0 21 35.22214698131277 36.0 36.0 36.0 36.0 36.0 22 35.198406930881646 36.0 36.0 36.0 36.0 36.0 23 35.16980419027522 36.0 36.0 36.0 36.0 36.0 24 35.16015144734239 36.0 36.0 36.0 36.0 36.0 25 35.15117921994108 36.0 36.0 36.0 36.0 36.0 26 35.11254347784609 36.0 36.0 36.0 36.0 36.0 27 35.09499334045425 36.0 36.0 36.0 36.0 36.0 28 35.07817627193307 36.0 36.0 36.0 36.0 36.0 29 35.06599193088667 36.0 36.0 36.0 36.0 36.0 30 35.04392354526834 36.0 36.0 36.0 36.0 36.0 31 35.042744275117066 36.0 36.0 36.0 36.0 36.0 32 35.016540577705136 36.0 36.0 36.0 36.0 36.0 33 34.99819946234921 36.0 36.0 36.0 36.0 36.0 34 34.987644944285094 36.0 36.0 36.0 36.0 36.0 35 34.978563593389794 36.0 36.0 36.0 36.0 36.0 36 34.95365398011207 36.0 36.0 36.0 36.0 36.0 37 34.95206064320601 36.0 36.0 36.0 36.0 36.0 38 34.946962969310526 36.0 36.0 36.0 36.0 36.0 39 34.92537760578368 36.0 36.0 36.0 36.0 36.0 40 34.91426274192528 36.0 36.0 36.0 36.0 36.0 41 34.887697531097686 36.0 36.0 36.0 36.0 36.0 42 34.8709601294218 36.0 36.0 36.0 32.0 36.0 43 34.855374884391026 36.0 36.0 36.0 32.0 36.0 44 34.82533613216127 36.0 36.0 36.0 32.0 36.0 45 34.80779436313554 36.0 36.0 36.0 32.0 36.0 46 34.79427007930868 36.0 36.0 36.0 32.0 36.0 47 34.76389391455764 36.0 36.0 36.0 32.0 36.0 48 34.74516751962633 36.0 36.0 36.0 32.0 36.0 49 34.725697344315755 36.0 36.0 36.0 32.0 36.0 50 34.32186041498393 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 8.0 20 23.0 21 74.0 22 170.0 23 515.0 24 1278.0 25 2873.0 26 6374.0 27 12083.0 28 20723.0 29 33898.0 30 50913.0 31 76627.0 32 117847.0 33 201458.0 34 467011.0 35 1995564.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.45805026474426 16.91865337872476 12.127842028724912 26.495454327806065 2 16.249386155278362 18.789389415726944 37.577941960667744 27.383282468326954 3 19.41685662927667 21.845532782358077 27.773303474893137 30.964307113472117 4 13.10329245106178 15.09044533111962 33.979895830543875 37.826366387274724 5 15.010482222398517 35.99775593744341 33.15445101975304 15.837310820405037 6 36.57478414614797 33.67045608980002 15.655990182892499 14.098769581159509 7 31.811339537751543 29.588768447644657 18.953144179249062 19.646747835354738 8 28.458469974804522 33.932686871472946 17.874294421212 19.734548732510536 9 26.978842427348354 14.817363757141983 17.76309557243139 40.44069824307827 10 16.17582277803069 27.203458479500842 31.247389068901803 25.373329673566662 11 37.431500739261466 21.183481113099806 21.400255268639615 19.984762878999117 12 24.850574404841602 22.980076587312215 28.367163859357845 23.802185148488338 13 30.07235958802199 19.508602847721512 24.44891798699958 25.970119577256924 14 23.411341010583975 18.581320936547367 25.025665778838814 32.98167227402985 15 25.427146511010594 26.56608113766933 21.905805001672 26.100967349648073 16 25.826975289404945 25.86811442504125 23.07336456872696 25.231545716826844 17 24.521254143596476 25.847338909789347 24.72443807258453 24.906968874029648 18 24.864214755251822 25.53713248609678 25.153392304710593 24.4452604539408 19 25.804928030377837 24.86824007570359 25.114738667642307 24.21209322627627 20 26.023815126652384 24.52955367307474 24.99132196949283 24.455309230780045 21 25.698901299742023 24.260277783077747 25.08516491884855 24.955655998331682 22 25.89587543318847 23.939117123986716 24.97977365912833 25.185233783696482 23 25.241912808290714 24.263349222076428 25.08304769300806 25.411690276624803 24 24.973145697436948 24.402452017913802 25.184867060741773 25.439535223907477 25 25.358367509797695 24.23094586796169 25.18879065526425 25.221895966976366 26 25.131726891767542 24.51249920081836 25.262206892811918 25.09356701460218 27 25.096755534697763 24.79140905917 24.86414726255981 25.24768814357243 28 25.40941160481851 24.446231953771125 24.95543779417332 25.188918647237042 29 24.99782421534511 24.899277907283455 24.949923479327367 25.15297439804407 30 25.388506338113743 24.676884906388594 24.797323963321986 25.13728479217568 31 25.194280832876974 24.42391917060428 24.964852709420946 25.416947287097795 32 25.241412645577316 24.73177488505116 24.899244028953447 25.127568440418074 33 25.200564898941803 24.593757123581184 24.866666644350992 25.33901133312602 34 25.298468842952467 24.577209586619063 24.984618804089422 25.13970276633905 35 25.274181973012272 24.703658526788224 25.077323935741468 24.94483556445804 36 25.35399096549381 24.632904146868466 24.985280014460564 25.027824873177156 37 25.477449660790064 24.400286136729036 24.943303218904305 25.178960983576594 38 25.275277402967962 24.593389459406897 24.968794362800807 25.162538774824338 39 25.270225080730274 24.69551455320767 24.864657327718227 25.169603038343823 40 25.542370725437163 24.549547438609647 24.85254933990306 25.05553249605013 41 25.085140754219548 24.778419806347046 24.91586346147795 25.220575977955455 42 25.32326089205177 24.575426648808804 24.855446050989976 25.245866408149453 43 25.276284983768026 24.38063089450925 24.86842695478279 25.474657166939934 44 25.12323796325122 24.673468772909406 24.979295754374338 25.223997509465036 45 25.212503753315218 24.75259920217155 24.879534063365 25.155362981148233 46 25.432998935850783 24.62563136786524 24.636008412770728 25.30536128351325 47 25.242409706631282 24.94623252787289 24.915235684797587 24.896122080698238 48 25.213227021376095 24.94542747335478 24.636621119542706 25.20472438572642 49 25.260114871654793 24.786448385081815 24.59560932925478 25.35782741400861 50 25.216954393801387 25.020728873035523 24.736801055373288 25.025515677789794 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 84.0 1 89.0 2 94.0 3 253.5 4 413.0 5 470.0 6 527.0 7 389.5 8 252.0 9 424.0 10 596.0 11 1023.0 12 1450.0 13 2649.5 14 3849.0 15 4997.5 16 6146.0 17 5696.0 18 5246.0 19 4809.5 20 4373.0 21 4993.5 22 5614.0 23 7118.0 24 8622.0 25 11397.5 26 14173.0 27 17451.5 28 20730.0 29 24828.0 30 28926.0 31 34897.0 32 40868.0 33 47004.0 34 53140.0 35 61906.5 36 70673.0 37 78976.0 38 87279.0 39 99471.5 40 111664.0 41 124919.0 42 138174.0 43 151212.5 44 164251.0 45 179099.5 46 193948.0 47 205528.0 48 217108.0 49 226276.5 50 235445.0 51 245747.0 52 256049.0 53 256331.5 54 256614.0 55 248712.0 56 240810.0 57 228980.0 58 217150.0 59 201249.5 60 185349.0 61 161868.0 62 138387.0 63 120446.0 64 102505.0 65 86180.0 66 69855.0 67 56744.5 68 43634.0 69 34697.5 70 25761.0 71 20418.5 72 15076.0 73 12344.0 74 9612.0 75 7724.0 76 5836.0 77 4588.0 78 3340.0 79 2706.5 80 2073.0 81 1552.5 82 1032.0 83 712.0 84 392.0 85 274.0 86 156.0 87 104.5 88 53.0 89 40.5 90 28.0 91 26.0 92 24.0 93 20.5 94 17.0 95 15.0 96 13.0 97 18.0 98 23.0 99 15.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03260315433844551 2 0.004083762658408986 3 3.6820810854507253E-4 4 3.347346441318842E-5 5 6.694692882637683E-5 6 1.0042039323956524E-4 7 0.0 8 0.0 9 0.0 10 3.347346441318842E-5 11 0.0 12 3.347346441318842E-5 13 0.0 14 0.0 15 0.0 16 6.025223594373914E-4 17 0.0 18 1.0042039323956524E-4 19 0.0 20 4.0168157295826095E-4 21 6.694692882637683E-5 22 0.0 23 3.347346441318842E-5 24 8.033631459165219E-4 25 1.6736732206594206E-4 26 3.347346441318841E-4 27 5.021019661978262E-4 28 0.0014728324341802901 29 4.3515503737144936E-4 30 0.0012719916477011595 31 4.3515503737144936E-4 32 8.368366103297103E-4 33 1.3389385765275367E-4 34 9.037835391560871E-4 35 3.012611797186957E-4 36 2.0084078647913047E-4 37 0.0019414609359649278 38 0.0 39 8.033631459165219E-4 40 3.347346441318842E-5 41 0.0011715712544615943 42 0.004954072733151885 43 0.004251129980474928 44 0.004385023838127682 45 0.00274482408188145 46 0.002610930224228696 47 0.0013389385765275365 48 0.00441849730254087 49 0.00358166069221116 50 0.0020753547936176813 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2987441.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.1382156813133 #Duplication Level Percentage of deduplicated Percentage of total 1 62.51121734236064 26.341111588738446 2 16.449056386068342 13.862677715004631 3 7.590840240195673 9.595933897312719 4 3.993611483350416 6.731346481311575 5 2.448093744678183 5.15791511106616 6 1.6071596516527797 4.06337040213895 7 1.0817424131420614 3.190788658162315 8 0.7851905933542128 2.6469224458958545 9 0.5831770585671762 2.211663660686779 >10 2.7891832869051316 20.241604078306082 >50 0.12728137367053494 3.631361127415416 >100 0.03320681182648605 2.1524456315379865 >500 0.0 0.0 >1k 2.3961422822814892E-4 0.17285920242314254 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.0084078647913047E-4 2 0.0 0.0 0.0 0.0 2.0084078647913047E-4 3 0.0 0.0 0.0 0.0 2.0084078647913047E-4 4 0.0 0.0 0.0 3.347346441318841E-5 2.0084078647913047E-4 5 0.0 0.0 0.0 3.347346441318841E-5 2.0084078647913047E-4 6 0.0 0.0 0.0 3.347346441318841E-5 2.677877153055073E-4 7 0.0 0.0 0.0 3.347346441318841E-5 2.677877153055073E-4 8 0.0 0.0 0.0 3.347346441318841E-5 2.677877153055073E-4 9 0.0 0.0 0.0 3.347346441318841E-5 2.677877153055073E-4 10 0.0 0.0 0.0 3.347346441318841E-5 2.677877153055073E-4 11 0.0 0.0 0.0 3.347346441318841E-5 2.677877153055073E-4 12 0.0 0.0 0.0 3.347346441318841E-5 7.698896815033334E-4 13 0.0 0.0 0.0 3.347346441318841E-5 8.368366103297103E-4 14 0.0 0.0 0.0 3.347346441318841E-5 8.368366103297103E-4 15 0.0 0.0 0.0 1.0042039323956524E-4 9.037835391560871E-4 16 0.0 0.0 0.0 3.6820810854507253E-4 9.372570035692756E-4 17 0.0 0.0 0.0 4.3515503737144936E-4 9.707304679824639E-4 18 0.0 0.0 0.0 6.359958238505799E-4 0.0010042039323956524 19 0.0 0.0 0.0 8.033631459165219E-4 0.0010042039323956524 20 0.0 0.0 0.0 0.0010711508612220291 0.0011715712544615943 21 0.0 0.0 0.0 0.0012385181832879713 0.0012719916477011597 22 0.0 0.0 0.0 0.0018745140071385511 0.001305465112114348 23 0.0 0.0 0.0 0.00230966904451 0.001305465112114348 24 0.0 0.0 0.0 0.0031465056548397106 0.001305465112114348 25 0.0 0.0 0.0 0.004050289193995798 0.001305465112114348 26 0.0 0.0 0.0 0.00485365233991232 0.001372412040940725 27 0.0 0.0 0.0 0.0058243828078947835 0.0014058855053539132 28 0.0 0.0 0.0 0.0067281663470508705 0.0014393589697671016 29 0.0 0.0 0.0 0.008067104923578407 0.0014393589697671016 30 0.0 0.0 0.0 0.010008565859543335 0.0014393589697671016 31 0.0 0.0 0.0 0.014560957019736958 0.0014393589697671016 32 0.0 0.0 0.0 0.020050605183499857 0.0014728324341802901 33 0.0 0.0 0.0 0.02379963319777696 0.0015063058985934786 34 0.0 0.0 0.0 0.0288875997885816 0.0015732528274198553 35 0.0 0.0 0.0 0.03474545606088957 0.0015732528274198553 36 0.0 0.0 0.0 0.04321424255742624 0.0015732528274198553 37 0.0 0.0 0.0 0.05630236714298291 0.0015732528274198553 38 0.0 0.0 0.0 0.07334036052929581 0.0016067262918330438 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3315 0.0 26.62194 1 GGTATCA 1450 0.0 25.043484 1 TATGCGA 100 4.6326022E-8 21.998703 12 TACCGTA 125 2.2928361E-8 19.358858 7 TCAACGC 4685 0.0 18.594421 4 TATCAAC 4745 0.0 18.498693 2 ACCGTAT 155 7.239578E-10 18.450525 8 CAACGCA 4820 0.0 18.027983 5 ATCAACG 4825 0.0 18.0093 3 AACGCAG 5040 0.0 17.41564 6 TACACCG 175 3.6343408E-9 16.341892 5 GTGTACG 225 2.5465852E-11 15.65007 1 ACCGCGT 85 0.0029824853 15.528496 8 GTGTAGG 710 0.0 15.498529 1 TAACGCG 100 4.9489393E-4 15.399092 12 CCTATAC 315 0.0 15.364173 3 CCGTGCG 295 0.0 14.914374 9 CGTATGC 180 9.07221E-8 14.665801 10 ACGCAGA 6220 0.0 14.005605 7 GTATTAG 335 0.0 13.796004 1 >>END_MODULE