FastQCFastQC Report
Thu 2 Feb 2017
SRR4062256_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062256_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1604442
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTAGT300.005746729.3321534
GTATCAA19150.028.7293151
GGTATCA6550.028.2222771
TATCAAC28650.018.7351342
TCAACGC28650.018.658354
ATCAACG29450.018.1515033
CAACGCA29600.018.1338395
GTATAGG2550.018.1231291
AGATAGT1509.61154E-917.5987426
AACGCAG31250.017.176376
TATACCG800.001989683416.4988215
TATAGGG2450.016.162112
GTGTACG1805.2477844E-915.8936951
CATATAC2403.6379788E-1215.5822193
TATACTA850.002981929615.5283025
GTCCTAC2001.2714736E-915.4046591
GTATAGA2001.2714736E-915.4046591
ATACCGT1301.3704259E-515.2296816
GCGTGTA1603.8287726E-715.1239199
TACACCG1603.8287726E-715.1239195
Produced by FastQC (version 0.11.5)