FastQCFastQC Report
Thu 2 Feb 2017
SRR4062252_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062252_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7006
Sequences flagged as poor quality0
Sequence length25
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGTACTGGTCATCATTTGTTG670.9563231515843562No Hit
GTATCAACGCAGAGTACTTTTTTTT350.49957179560376824No Hit
GTGCACGCAGGTGCGAGTGGAATTC340.4852983157293748No Hit
CACAAACACCATTCAGAAATCAGCA280.39965743648301455No Hit
TATCAACGCAGAGTACTTTTTTTTT260.3711104767342278No Hit
GTCCACCAGTACCTGTTTAGAAATA250.35683699685983444No Hit
CCAATAGGGTGAGCACGTCACCCTC230.32829003711104765No Hit
CTGCAATGTTAGGTCAAGTTAAAGA220.3140165572366543No Hit
GTACTGGTCATCATTTGTTGAATAC220.3140165572366543No Hit
GTACAGGGTGGCCAGTTGTCCCAAT220.3140165572366543No Hit
ATCCAGAACCCAGCTGCAGGATTAA220.3140165572366543No Hit
GGGGGGGGGGGGGGGGGGGGGGGGG200.28546959748786754No Hit
GTGGGGATATGTCCACCAGTACCTG200.28546959748786754No Hit
GTACATGGGCTCTCCGCCAGATCGC200.28546959748786754No Hit
CTTCTAGTGGTATTCTTGTGGCTTC190.2711961176134742No Hit
GAATATCAGCAGTCCAGTTCACACA190.2711961176134742No Hit
GTAGTGGATATCCAGAACCCAGCTG190.2711961176134742No Hit
GTATCAACGCAGAGTACATGGGCTC180.2569226377390808No Hit
CCCTCTAGATGGTAAAGTGGGCAAA180.2569226377390808No Hit
GTTTAGAAATAGTTCTTTGAGGTGA170.2426491578646874No Hit
ATATATAAGTACACTGTAGCTGTCT170.2426491578646874No Hit
GTATCAACGCAGAGTACATGGGAGT170.2426491578646874No Hit
ATTTAACAGTTGCAGATCATTCCGT170.2426491578646874No Hit
GTATCAACGCAGAGTACATGGGGGG160.22837567799029404No Hit
GGTTTAAATAGAACCCAATGGACTG160.22837567799029404No Hit
TATCAACGCAGAGTACATGGGCTCT160.22837567799029404No Hit
GGTATCAACGCAGAGTACTTTTTTT160.22837567799029404No Hit
GTTGCAGATCATTCCGTGGGCTAAG160.22837567799029404No Hit
TGCGTGCACTGTCCCTGCGAACCGG140.19982871824150727No Hit
GTGTTTGTGAGTGGATCAAGCTACC140.19982871824150727No Hit
GGCTAGGGTAACCAAAGTGCTGGGC140.19982871824150727No Hit
GAACTGGACTGCTGATATTCAGACA140.19982871824150727No Hit
GTACATGGGAGTCATATGGTGTTTT140.19982871824150727No Hit
GTACATGGGGGGCTGGTGAGATGGC130.1855552383671139No Hit
GCCATGTGTCGTTTGCTAGAACAGA130.1855552383671139No Hit
GGATTAACGCAACCTTCGAGCTTCT120.17128175849272054No Hit
TTATTTAACAGTTGCAGATCATTCC120.17128175849272054No Hit
CCCAGACACAGACCCTCTAGATGGT120.17128175849272054No Hit
TATCAACGCAGAGTACATGGGAGTC120.17128175849272054No Hit
AAGTAGTGGATATCCAGAACCCAGC120.17128175849272054No Hit
GTTCAGTGGGGATATGTCCACCAGT120.17128175849272054No Hit
GGACAACACTTTGTGCTATTGGGAC120.17128175849272054No Hit
GTTGAATACCACTTCTAGTGGTATT120.17128175849272054No Hit
AGCTTGATCCACTCACAAACACCAT120.17128175849272054No Hit
GTCTGAATATCAGCAGTCCAGTTCA120.17128175849272054No Hit
CGCAGGGACAGTGCACGCAGGTGCG110.15700827861832714No Hit
CCCTGTACTGGTCATCATTTGTTGA110.15700827861832714No Hit
CTTTCAGTTGGCTCAAGGAAACAGC110.15700827861832714No Hit
GGGCTAAGTAGTGGATATCCAGAAC110.15700827861832714No Hit
GGATATAGAGCATGTGTAGAGAGGT110.15700827861832714No Hit
GTCTTCAGACACTCCAGAAGAGGGA110.15700827861832714No Hit
GTTGTGAGGCACCATGTGGTTGCTG110.15700827861832714No Hit
CTCCAGAAGAGGGAGTCAGATCTCA110.15700827861832714No Hit
CCCAATGGACTGTGGACAACACTTT110.15700827861832714No Hit
GTATTCTTGTGGCTTCTTGCTGTTT110.15700827861832714No Hit
GCTGATATTCAGACAATGAAGATTG110.15700827861832714No Hit
GTGTAGAGAGGTTCTGTTCAGTGGG110.15700827861832714No Hit
GTTCAGGGCCAGGGATGGAACCCAC110.15700827861832714No Hit
ATTCAGAAATCAGCAACAGCAGTTC110.15700827861832714No Hit
GTGGACAACACTTTGTGCTATTGGG100.14273479874393377No Hit
CTGTACTGGTCATCATTTGTTGAAT100.14273479874393377No Hit
ACGCAGAGTACATGGGAGTCATATG100.14273479874393377No Hit
GTACTTTTTTTTTTTTTTTTTTTTT100.14273479874393377No Hit
GTGCTATTGGGACAACTGGCCACCC100.14273479874393377No Hit
GGTCATCATTTGTTGAATACCACTT100.14273479874393377No Hit
TGTGTAGAGAGGTTCTGTTCAGTGG100.14273479874393377No Hit
GACACAGACCCTCTAGATGGTAAAG100.14273479874393377No Hit
TCCGTGGGCTAAGTAGTGGATATCC100.14273479874393377No Hit
AGCTACCTCAGCTGATTTGTGTGAA100.14273479874393377No Hit
TTTCTGAATGGTGTTTGTGAGTGGA100.14273479874393377No Hit
TTTCTAAACAGGTACTGGTGGACAT100.14273479874393377No Hit
ATGGTAAAGTGGGCAAAAAGCAGGT90.1284613188695404No Hit
CCACTGAACAGAACCTCTCTACACA90.1284613188695404No Hit
GTATCAACGCAGAGTACATGGGGAT90.1284613188695404No Hit
CCAAAGTGCTGGGCAGGACCGGTTC90.1284613188695404No Hit
ACGCAGAGTACATGGGCTCTCCGCC90.1284613188695404No Hit
GGTATCAACGCAGAGTACATGGGAG90.1284613188695404No Hit
GGTATCAACGCAGAGTACATGGGCT90.1284613188695404No Hit
CTCCAATAGGGTGAGCACGTCACCC90.1284613188695404No Hit
CCAATGGACTGTGGACAACACTTTG90.1284613188695404No Hit
CCATCAAGCTGGCTAGGGTAACCAA90.1284613188695404No Hit
GGGTTTAAATAGAACCCAATGGACT90.1284613188695404No Hit
GTCCAGTTCACACAAATCAGCTGAG90.1284613188695404No Hit
GTTCTGTTCAGTGGGGATATGTCCA80.11418783899514702No Hit
TAAGTACACTGTAGCTGTCTTCAGA80.11418783899514702No Hit
GGTTTGGCACACTGCAATGTTAGGT80.11418783899514702No Hit
CAGCAGTCCAGTTCACACAAATCAG80.11418783899514702No Hit
GATCAAGCTACCTCAGCTGATTTGT80.11418783899514702No Hit
GTTTGTGAGTGGATCAAGCTACCTC80.11418783899514702No Hit
GAGTACTTTTTTTTTTTTTTTTTTT80.11418783899514702No Hit
TCTTGTGGCTTCTTGCTGTTTCCTT80.11418783899514702No Hit
CTCTACACATGCTCTATATCCTGAC80.11418783899514702No Hit
TCCTAGTTGGGTTCGTTAACCACTG80.11418783899514702No Hit
GGGGATATGTCCACCAGTACCTGTT80.11418783899514702No Hit
ACACTACACCCAGACACAGACCCTC80.11418783899514702No Hit
GCCTCACAGTTTCTTCTTGATTGAA80.11418783899514702No Hit
TCTTTGAGGTGATTCCAATCTTCAT80.11418783899514702No Hit
GGGTGAGCACGTCACCCTCTCGAAC80.11418783899514702No Hit
CCTTAACCCACTGTTCAGGGCCAGG80.11418783899514702No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)