##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062245_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3566218 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.005002218036026 32.0 32.0 32.0 32.0 32.0 2 30.85019087447823 32.0 32.0 32.0 32.0 32.0 3 31.261694321547363 32.0 32.0 32.0 32.0 32.0 4 31.44673629037821 32.0 32.0 32.0 32.0 32.0 5 31.33624472760779 32.0 32.0 32.0 32.0 32.0 6 34.99236137555248 36.0 36.0 36.0 36.0 36.0 7 35.01601808975222 36.0 36.0 36.0 36.0 36.0 8 34.922154226129756 36.0 36.0 36.0 36.0 36.0 9 35.107443796200904 36.0 36.0 36.0 36.0 36.0 10 34.87076084524278 36.0 36.0 36.0 32.0 36.0 11 35.123532268638655 36.0 36.0 36.0 36.0 36.0 12 34.98972048259529 36.0 36.0 36.0 36.0 36.0 13 35.07078591381682 36.0 36.0 36.0 36.0 36.0 14 35.00273847532596 36.0 36.0 36.0 32.0 36.0 15 34.9517314981866 36.0 36.0 36.0 32.0 36.0 16 34.98175377949413 36.0 36.0 36.0 36.0 36.0 17 34.95218716298331 36.0 36.0 36.0 32.0 36.0 18 34.9600913348539 36.0 36.0 36.0 32.0 36.0 19 34.950412173344425 36.0 36.0 36.0 32.0 36.0 20 34.959189258760965 36.0 36.0 36.0 32.0 36.0 21 34.95824456048396 36.0 36.0 36.0 32.0 36.0 22 34.93451045337105 36.0 36.0 36.0 32.0 36.0 23 34.89407181501524 36.0 36.0 36.0 32.0 36.0 24 34.87914816200244 36.0 36.0 36.0 32.0 36.0 25 34.855626324582516 36.0 36.0 36.0 32.0 36.0 26 34.80767861078599 36.0 36.0 36.0 32.0 36.0 27 34.78869771842327 36.0 36.0 36.0 32.0 36.0 28 34.76940248745309 36.0 36.0 36.0 32.0 36.0 29 34.7440961264847 36.0 36.0 36.0 32.0 36.0 30 34.722659411174526 36.0 36.0 36.0 32.0 36.0 31 34.727800151308756 36.0 36.0 36.0 32.0 36.0 32 34.6959667075877 36.0 36.0 36.0 32.0 36.0 33 34.67088691717668 36.0 36.0 36.0 32.0 36.0 34 34.65504099861534 36.0 36.0 36.0 32.0 36.0 35 34.6451262934571 36.0 36.0 36.0 32.0 36.0 36 34.604887025975415 36.0 36.0 36.0 32.0 36.0 37 34.60813500464638 36.0 36.0 36.0 32.0 36.0 38 34.586284405496244 36.0 36.0 36.0 32.0 36.0 39 34.57276139596626 36.0 36.0 36.0 32.0 36.0 40 34.55724495810408 36.0 36.0 36.0 32.0 36.0 41 34.52012888724133 36.0 36.0 36.0 32.0 36.0 42 34.489288932981665 36.0 36.0 36.0 32.0 36.0 43 34.49019185030192 36.0 36.0 36.0 32.0 36.0 44 34.43141669970821 36.0 36.0 36.0 32.0 36.0 45 34.42724252976122 36.0 36.0 36.0 32.0 36.0 46 34.406765374410654 36.0 36.0 36.0 32.0 36.0 47 34.39017777376481 36.0 36.0 36.0 32.0 36.0 48 34.358625580376746 36.0 36.0 36.0 32.0 36.0 49 34.33991107666441 36.0 36.0 36.0 32.0 36.0 50 33.81588085753591 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 21.0 21 55.0 22 142.0 23 386.0 24 1166.0 25 2961.0 26 6700.0 27 13594.0 28 26032.0 29 45592.0 30 76258.0 31 126395.0 32 213385.0 33 399844.0 34 874809.0 35 1778875.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.86823095225607 17.564681256032117 12.265113843442233 25.30197394826958 2 16.36655731250678 19.291582459102955 37.68896401632153 26.65289621206874 3 18.97859689777276 22.79286817497109 28.36987817886317 29.858656748392974 4 13.037628679810757 15.901981259688139 35.199298079533044 35.86109198096806 5 15.24497380698544 36.05665722061859 32.91414041429885 15.784228558097121 6 35.62824205957412 34.784994614735574 16.02304741752666 13.563715908163646 7 31.46644428355193 30.031142235275578 19.56470412072397 18.937709360448522 8 28.292185166470475 33.54410751109438 18.44626436185337 19.71744296058177 9 26.722679320221033 14.800160842663013 18.383929417663193 40.093230419452766 10 16.07370839952162 26.832678343846343 31.101209545694807 25.99240371093723 11 37.41860424685199 21.4379210693233 21.587154795360238 19.556319888464476 12 24.476714547456158 23.46185791221961 28.43611916041027 23.62530837991396 13 29.21860076977908 19.520848136597373 25.063190191962466 26.19736090166109 14 23.501816209777417 19.387765975046957 24.937342585338303 32.17307522983732 15 25.11691657660861 27.149209610853852 21.959510046777847 25.774363765759695 16 25.925130390892264 26.133110874320003 23.245779821658907 24.695978913128823 17 24.13545666585722 26.37483182463887 24.86620279523013 24.623508714273775 18 24.883581051619153 25.624142122670673 25.473029528505712 24.01924729720446 19 25.451444639671493 25.390708027383628 25.180513361774292 23.977333971170577 20 25.631987814507735 24.822668784322172 24.83256725350849 24.712776147661604 21 26.2600884185992 24.62499488253382 24.649362433816442 24.46555426505054 22 25.767746110865907 24.503269289762994 25.045496377394766 24.683488221976337 23 24.56201499740061 24.718146787436996 25.34522567044415 25.374612544718246 24 24.642138487526164 25.213477487420725 25.17124747348987 24.97313655156324 25 24.8725747705757 24.788984605220836 25.2114219890085 25.127018635194965 26 24.698594332858413 25.446475765428083 25.404862925792028 24.450066975921477 27 25.14003701418877 25.18751051539454 24.912567999551342 24.759884470865348 28 24.844587779407604 24.83267020193424 25.381467634243098 24.94127438441506 29 24.63503879899086 25.292068506514354 25.356787236613975 24.71610545788081 30 24.664662845778977 25.275875886486045 25.434112120312257 24.625349147422725 31 25.036502429335865 25.05102769025077 24.819829280514476 25.092640599898886 32 25.066948124527155 25.0532640680793 24.710209259507476 25.16957854788607 33 24.631541815237007 24.974538810367978 25.16395547993221 25.22996389446281 34 25.21109304021087 24.945852728394367 25.2856541977455 24.557400033649262 35 25.565522866974018 24.7599624587763 25.219553627335216 24.454961046914473 36 24.58814866410148 25.210096758074528 25.07822020776095 25.123534370063044 37 25.505598443147694 24.92304068510475 24.96269106632606 24.608669805421503 38 24.83050671607849 24.85616414924719 25.27767511688854 25.03565401778579 39 25.351439294350946 24.95987316442861 24.718270917550146 24.970416623670292 40 25.42157441433004 25.120947559246986 24.991146075040344 24.466331951382628 41 24.626484604696618 25.376698068103586 25.30976379520412 24.687053531995677 42 25.48310198148157 25.21224350958997 24.975820714630032 24.328833794298426 43 25.26113356180037 24.562777071899816 25.08923646562745 25.086852900672362 44 24.724242566151638 25.174652216841597 25.012065044963848 25.089040172042914 45 24.952630975318193 25.276341510127594 24.940993772273675 24.830033742280538 46 24.772836379380355 25.12369074565526 25.02285376506666 25.08061910989773 47 24.907302850134165 25.080569337019444 25.243376461611756 24.768751351234638 48 25.435610027898896 25.486001338720744 24.47290324335526 24.605485390025102 49 24.914598533186695 25.453506886238124 24.720464776907423 24.91142980366776 50 25.117275775363296 25.33389490733328 24.700806215749292 24.848023101554134 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 12.0 1 14.5 2 17.0 3 78.5 4 140.0 5 167.5 6 195.0 7 186.5 8 178.0 9 221.5 10 265.0 11 439.0 12 613.0 13 1125.5 14 1638.0 15 2287.0 16 2936.0 17 3426.5 18 3917.0 19 4583.5 20 5250.0 21 7120.5 22 8991.0 23 11688.0 24 14385.0 25 18833.0 26 23281.0 27 28498.5 28 33716.0 29 39952.5 30 46189.0 31 53134.0 32 60079.0 33 68812.5 34 77546.0 35 88524.0 36 99502.0 37 114728.5 38 129955.0 39 143885.5 40 157816.0 41 170967.5 42 184119.0 43 193048.5 44 201978.0 45 218506.0 46 235034.0 47 248197.5 48 261361.0 49 269671.0 50 277981.0 51 272984.5 52 267988.0 53 266336.0 54 264684.0 55 264316.5 56 263949.0 57 254262.0 58 244575.0 59 224095.5 60 203616.0 61 178050.0 62 152484.0 63 132014.0 64 111544.0 65 94053.5 66 76563.0 67 64888.0 68 53213.0 69 46352.0 70 39491.0 71 30797.0 72 22103.0 73 19138.5 74 16174.0 75 12147.0 76 8120.0 77 6943.0 78 5766.0 79 4856.5 80 3947.0 81 3100.0 82 2253.0 83 1774.5 84 1296.0 85 1018.5 86 741.0 87 517.5 88 294.0 89 221.0 90 148.0 91 101.5 92 55.0 93 49.0 94 43.0 95 40.0 96 37.0 97 30.0 98 23.0 99 20.0 100 17.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.025993924095498368 2 0.0036172774631276047 3 1.6824546340128392E-4 4 5.6081821133761315E-5 5 0.0 6 1.4020455283440328E-4 7 0.0 8 0.0 9 0.0 10 8.412273170064196E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 5.047363902038517E-4 17 0.0 18 8.412273170064196E-5 19 0.0 20 2.8040910566880657E-4 21 0.0 22 0.0 23 0.0 24 9.533909592739423E-4 25 2.523681951019259E-4 26 3.084500162356872E-4 27 5.047363902038517E-4 28 0.0015983319023121975 29 4.7669547963697116E-4 30 8.692682275733003E-4 31 4.7669547963697116E-4 32 6.729818536051357E-4 33 1.6824546340128392E-4 34 5.047363902038517E-4 35 1.4020455283440328E-4 36 1.1216364226752263E-4 37 0.0013459637072102714 38 0.0 39 7.290636747388971E-4 40 8.412273170064196E-5 41 9.253500487070616E-4 42 0.004178095674465218 43 0.003673359284261366 44 0.003673359284261366 45 0.0019348228291147652 46 0.0018507000974141233 47 9.81431869840823E-4 48 0.0035611956419938436 49 0.003364909268025679 50 0.0014300864389109136 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3566218.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.13890969298338 #Duplication Level Percentage of deduplicated Percentage of total 1 71.6977247755709 34.51450298163585 2 14.975275903486374 14.417869086908814 3 5.514054732825057 7.963217484768991 4 2.600084896283088 5.006610080650466 5 1.3859144462798698 3.3358205185833856 6 0.8429078224962129 2.4345998127992674 7 0.5638113486764242 1.8998884518469488 8 0.4158076952917626 1.601322327463817 9 0.28710367555008903 1.2438772118846404 >10 1.5388334885470414 13.319523049085625 >50 0.10170741613369362 3.3846362762926976 >100 0.06683185768446091 6.19522915753546 >500 0.0070178408370502095 2.349418969422458 >1k 0.00292410033804933 2.333484591121601 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.412273170064196E-5 2 0.0 0.0 0.0 0.0 8.412273170064196E-5 3 0.0 0.0 0.0 0.0 8.412273170064196E-5 4 0.0 0.0 0.0 0.0 8.412273170064196E-5 5 0.0 0.0 0.0 0.0 1.1216364226752263E-4 6 0.0 0.0 0.0 0.0 1.1216364226752263E-4 7 2.8040910566880658E-5 0.0 0.0 0.0 1.1216364226752263E-4 8 2.8040910566880658E-5 0.0 0.0 0.0 1.4020455283440328E-4 9 2.8040910566880658E-5 0.0 0.0 8.412273170064196E-5 1.4020455283440328E-4 10 2.8040910566880658E-5 0.0 0.0 8.412273170064196E-5 1.6824546340128392E-4 11 2.8040910566880658E-5 0.0 0.0 8.412273170064196E-5 1.6824546340128392E-4 12 2.8040910566880658E-5 0.0 0.0 8.412273170064196E-5 5.608182113376131E-4 13 2.8040910566880658E-5 0.0 0.0 8.412273170064196E-5 7.851454958726584E-4 14 2.8040910566880658E-5 0.0 0.0 8.412273170064196E-5 7.851454958726584E-4 15 2.8040910566880658E-5 0.0 0.0 1.1216364226752263E-4 0.0010375136909745843 16 2.8040910566880658E-5 0.0 0.0 1.1216364226752263E-4 0.0010375136909745843 17 2.8040910566880658E-5 0.0 0.0 1.1216364226752263E-4 0.0010375136909745843 18 2.8040910566880658E-5 0.0 0.0 1.1216364226752263E-4 0.0011496773332421069 19 2.8040910566880658E-5 0.0 0.0 1.4020455283440328E-4 0.0011777182438089877 20 2.8040910566880658E-5 0.0 0.0 1.4020455283440328E-4 0.0012898818860765102 21 2.8040910566880658E-5 0.0 0.0 1.6824546340128392E-4 0.0013179227966433908 22 2.8040910566880658E-5 2.8040910566880658E-5 0.0 1.6824546340128392E-4 0.0013179227966433908 23 2.8040910566880658E-5 2.8040910566880658E-5 0.0 1.6824546340128392E-4 0.0013459637072102714 24 2.8040910566880658E-5 2.8040910566880658E-5 0.0 1.6824546340128392E-4 0.0013459637072102714 25 2.8040910566880658E-5 2.8040910566880658E-5 0.0 1.6824546340128392E-4 0.0013459637072102714 26 5.6081821133761315E-5 2.8040910566880658E-5 0.0 1.6824546340128392E-4 0.0013740046177771522 27 5.6081821133761315E-5 2.8040910566880658E-5 0.0 1.6824546340128392E-4 0.0014020455283440328 28 5.6081821133761315E-5 2.8040910566880658E-5 0.0 1.962863739681646E-4 0.0014020455283440328 29 5.6081821133761315E-5 2.8040910566880658E-5 0.0 2.8040910566880657E-4 0.0014020455283440328 30 5.6081821133761315E-5 2.8040910566880658E-5 0.0 3.925727479363292E-4 0.0014300864389109134 31 5.6081821133761315E-5 2.8040910566880658E-5 0.0 5.608182113376131E-4 0.0015422500811784362 32 5.6081821133761315E-5 2.8040910566880658E-5 0.0 7.290636747388971E-4 0.0015702909917453167 33 5.6081821133761315E-5 2.8040910566880658E-5 0.0 9.253500487070616E-4 0.0015983319023121973 34 5.6081821133761315E-5 2.8040910566880658E-5 0.0 0.0013179227966433908 0.0015983319023121973 35 5.6081821133761315E-5 2.8040910566880658E-5 0.0 0.0021591501136498104 0.0016263728128790781 36 5.6081821133761315E-5 5.6081821133761315E-5 0.0 0.0032527456257581563 0.0016263728128790781 37 5.6081821133761315E-5 5.6081821133761315E-5 0.0 0.004682832064669069 0.0016263728128790781 38 5.6081821133761315E-5 8.412273170064196E-5 0.0 0.007514964031924016 0.0016824546340128393 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3615 0.0 28.001795 1 CGCAATA 590 0.0 25.356169 36 GGTATCA 1670 0.0 23.455238 1 TCTAGCG 695 0.0 22.157545 28 CTAGCGG 720 0.0 21.388186 29 TAGCGGC 745 0.0 21.261047 30 GCGCAAT 755 0.0 20.396969 35 CGAATGC 785 0.0 19.900227 43 CAATACG 765 0.0 19.55656 38 TATAGCG 80 8.99807E-5 19.249098 5 ATACGAA 780 0.0 19.18101 40 TCAACGC 5150 0.0 19.051535 4 TACGAAT 790 0.0 18.938211 41 AATACGA 810 0.0 18.742228 39 ATCAACG 5230 0.0 18.718054 3 CAACGCA 5245 0.0 18.706465 5 GTATTAC 450 0.0 18.093624 1 AACGCAG 5515 0.0 17.910313 6 TATCAAC 5545 0.0 17.73531 2 GCAATAC 880 0.0 17.25016 37 >>END_MODULE