##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062242_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1264569 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.27144979831073 32.0 32.0 32.0 32.0 32.0 2 31.451830623714482 32.0 32.0 32.0 32.0 32.0 3 31.581381482544646 32.0 32.0 32.0 32.0 32.0 4 31.655314972927535 32.0 32.0 32.0 32.0 32.0 5 31.63673631094863 32.0 32.0 32.0 32.0 32.0 6 35.280017934964405 36.0 36.0 36.0 36.0 36.0 7 35.28470095344738 36.0 36.0 36.0 36.0 36.0 8 35.23741606824143 36.0 36.0 36.0 36.0 36.0 9 35.31745994089686 36.0 36.0 36.0 36.0 36.0 10 35.20542334977372 36.0 36.0 36.0 36.0 36.0 11 35.322283718800634 36.0 36.0 36.0 36.0 36.0 12 35.243234651489956 36.0 36.0 36.0 36.0 36.0 13 35.273502671661255 36.0 36.0 36.0 36.0 36.0 14 35.24639462140856 36.0 36.0 36.0 36.0 36.0 15 35.22136000487122 36.0 36.0 36.0 36.0 36.0 16 35.23512833226182 36.0 36.0 36.0 36.0 36.0 17 35.220097124000354 36.0 36.0 36.0 36.0 36.0 18 35.206914767007575 36.0 36.0 36.0 36.0 36.0 19 35.19525387701264 36.0 36.0 36.0 36.0 36.0 20 35.19277951618298 36.0 36.0 36.0 36.0 36.0 21 35.172495134705976 36.0 36.0 36.0 36.0 36.0 22 35.148086818512866 36.0 36.0 36.0 36.0 36.0 23 35.127501939395955 36.0 36.0 36.0 36.0 36.0 24 35.112441472153755 36.0 36.0 36.0 36.0 36.0 25 35.08048433893287 36.0 36.0 36.0 36.0 36.0 26 35.04647275079493 36.0 36.0 36.0 36.0 36.0 27 35.02273343724225 36.0 36.0 36.0 36.0 36.0 28 34.98563700359569 36.0 36.0 36.0 36.0 36.0 29 34.95533814287714 36.0 36.0 36.0 36.0 36.0 30 34.92922331640266 36.0 36.0 36.0 36.0 36.0 31 34.930192816683 36.0 36.0 36.0 36.0 36.0 32 34.89925421230475 36.0 36.0 36.0 36.0 36.0 33 34.886997071729574 36.0 36.0 36.0 32.0 36.0 34 34.87309589275081 36.0 36.0 36.0 32.0 36.0 35 34.85329863376376 36.0 36.0 36.0 32.0 36.0 36 34.81651455950605 36.0 36.0 36.0 32.0 36.0 37 34.78326765878335 36.0 36.0 36.0 32.0 36.0 38 34.757727731741014 36.0 36.0 36.0 32.0 36.0 39 34.691855485940266 36.0 36.0 36.0 32.0 36.0 40 34.715748211445955 36.0 36.0 36.0 32.0 36.0 41 34.686881459216536 36.0 36.0 36.0 32.0 36.0 42 34.66034356369641 36.0 36.0 36.0 32.0 36.0 43 34.668699770435616 36.0 36.0 36.0 32.0 36.0 44 34.59534829653423 36.0 36.0 36.0 32.0 36.0 45 34.57660831476969 36.0 36.0 36.0 32.0 36.0 46 34.50481863781257 36.0 36.0 36.0 32.0 36.0 47 34.497490449315144 36.0 36.0 36.0 32.0 36.0 48 34.47356451091241 36.0 36.0 36.0 32.0 36.0 49 34.44298254978574 36.0 36.0 36.0 32.0 36.0 50 34.06078750942021 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 4.0 20 11.0 21 21.0 22 81.0 23 242.0 24 566.0 25 1471.0 26 3219.0 27 6055.0 28 10675.0 29 16738.0 30 25253.0 31 36375.0 32 55085.0 33 93226.0 34 210344.0 35 805203.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.469810401346685 18.16913263045982 12.082563378855573 26.278493589337927 2 15.101928487940821 20.237102950224354 39.29992076007067 25.36104780176416 3 18.76037907136373 24.094786819805087 28.762719799076997 28.382114309754193 4 12.008913708939566 16.337344976826095 36.914079026134594 34.73966228809974 5 13.665920958049737 37.742424494037095 34.055002139068726 14.536652408844436 6 33.790328065122736 36.4137577635331 16.89124964612365 12.904664525220511 7 29.642747845313306 30.540603162025953 20.890754083011682 18.925894909649056 8 26.588821962265403 35.70125473580327 19.378460171014787 18.331463130916543 9 26.956615257846746 14.237894492115496 18.864451050120636 39.94103919991713 10 15.50814191091345 27.512557648145453 32.57499794396189 24.404302496979206 11 36.80811406890411 21.182157715395523 23.433833978217084 18.575894237483283 12 24.51285774046335 23.547785846403006 30.2612985135647 21.678057899568945 13 29.637528675778068 20.2858839652087 25.371964677293214 24.704622681720018 14 22.33211473632518 20.7608283929149 25.76530027226668 31.14175659849324 15 24.055468701193846 29.673588392566952 22.210492270488995 24.060450635750204 16 24.228130122833335 26.446136558278422 25.95742863717707 23.368304681711173 17 22.93050043137227 27.174634203432156 26.456049452422132 23.438815912773443 18 23.37386897955504 25.979743247881093 28.249217518105024 22.397170254458842 19 25.204160468902842 25.100963253092555 25.78910284848039 23.90577342952421 20 25.198981782639535 25.599199090911245 25.97822330718201 23.22359581926721 21 25.293202664306968 25.088785190843677 25.07905855670984 24.538953588139517 22 24.83628809499521 26.22087051003148 25.8138543646096 23.128987030363703 23 23.365626336920066 26.15511870861726 26.30876813960826 24.170486814854414 24 24.339392118175958 25.498772295392452 26.70227866719913 23.45955691923246 25 23.99283548097567 25.6734133872122 26.58455674480948 23.749194387002646 26 22.896569175961694 26.92340844480118 27.03253688027108 23.14748549896605 27 23.70838575600544 26.2613665928334 26.40853228907107 23.621715362090086 28 23.253209842568253 26.505122779048325 26.037208551988538 24.204458826394887 29 23.609899673168762 25.696938161441825 25.999413237890916 24.693748927498504 30 23.297858375363962 26.114266373757072 26.605902159971023 23.98197309090794 31 24.643514623175662 25.331259370789077 25.948466195570347 24.076759810464917 32 23.890304841450654 26.260933653550367 25.89305837054657 23.955703134452406 33 23.23736108881538 26.089483593989087 26.84476188292119 23.82839343427434 34 23.936347719914785 26.259056524097744 26.862192165167592 22.942403590819875 35 24.10064148389015 26.268180121590927 26.708488590570063 22.92268980394886 36 23.10913837046456 26.446085583309415 26.68442765875172 23.76034838747431 37 23.893751423438015 26.209289672799045 25.8390376293747 24.05792127438824 38 23.78011796904716 26.539556164985857 25.91483738728373 23.76548847868325 39 24.723698361485418 25.464667552350225 25.865360283418738 23.94627380274562 40 25.294626074180215 25.52743266678212 26.25859087167248 22.91935038736518 41 24.177895868918835 25.514408173593978 27.03952362877206 23.268172328715124 42 24.51170654785347 26.696670478431894 26.301259147841133 22.4903638258735 43 23.56076548288703 26.128481489653293 26.76011005062044 23.55064297683923 44 23.172722268968702 26.60553070611085 26.17785313450966 24.043893890410786 45 23.40930298764768 26.861862811773452 26.0359498315593 23.692884369019566 46 23.53928750206597 25.705376750541898 26.13051259077433 24.624823156617797 47 24.362562324295897 25.825290319519517 26.194985587815477 23.61716176836911 48 24.0450922089014 26.295748584443107 25.443330275519564 24.215828931135924 49 24.191079014712255 26.21879853604993 25.677962616763306 23.91215983247451 50 23.771008411667996 27.106890735303306 25.228361326097048 23.89373952693165 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 276.0 1 162.0 2 48.0 3 137.5 4 227.0 5 224.0 6 221.0 7 175.5 8 130.0 9 200.5 10 271.0 11 413.0 12 555.0 13 1068.0 14 1581.0 15 2046.5 16 2512.0 17 2530.0 18 2548.0 19 2598.0 20 2648.0 21 3269.5 22 3891.0 23 4995.0 24 6099.0 25 8155.5 26 10212.0 27 14061.0 28 17910.0 29 21405.0 30 24900.0 31 28812.5 32 32725.0 33 39578.5 34 46432.0 35 53573.0 36 60714.0 37 64213.5 38 67713.0 39 67962.0 40 68211.0 41 69482.0 42 70753.0 43 70890.5 44 71028.0 45 74723.0 46 78418.0 47 81551.5 48 84685.0 49 86640.0 50 88595.0 51 85765.5 52 82936.0 53 82031.0 54 81126.0 55 80253.5 56 79381.0 57 75795.5 58 72210.0 59 65476.0 60 58742.0 61 51493.5 62 44245.0 63 38134.5 64 32024.0 65 26899.5 66 21775.0 67 18868.0 68 15961.0 69 14267.5 70 12574.0 71 9881.5 72 7189.0 73 6297.0 74 5405.0 75 4021.0 76 2637.0 77 2362.5 78 2088.0 79 1687.0 80 1286.0 81 981.0 82 676.0 83 605.0 84 534.0 85 418.5 86 303.0 87 203.0 88 103.0 89 62.0 90 21.0 91 19.0 92 17.0 93 13.5 94 10.0 95 8.0 96 6.0 97 9.0 98 12.0 99 8.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03360828867384856 2 0.0043493079460274605 3 3.953916314570419E-4 4 0.0 5 0.0 6 2.3723497887422515E-4 7 0.0 8 0.0 9 0.0 10 7.907832629140837E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 7.907832629140838E-4 17 0.0 18 2.3723497887422515E-4 19 0.0 20 4.744699577484503E-4 21 0.0 22 0.0 23 1.5815665258281673E-4 24 0.0011070965680797173 25 3.1631330516563346E-4 26 3.1631330516563346E-4 27 6.326266103312669E-4 28 0.001660644852119576 29 1.5815665258281673E-4 30 0.0011861748943711257 31 7.907832629140837E-5 32 7.907832629140838E-4 33 1.5815665258281673E-4 34 8.698615892054921E-4 35 7.907832629140837E-5 36 0.0 37 0.0019769581572852096 38 0.0 39 7.117049366226753E-4 40 0.0 41 7.117049366226753E-4 42 0.004981934556358728 43 0.004744699577484503 44 0.005140091208941544 45 0.002293271462450843 46 0.0025305064413250677 47 0.0011070965680797173 48 0.00387483798827901 49 0.003558524683113377 50 0.0012652532206625339 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1264569.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.60515254188956 #Duplication Level Percentage of deduplicated Percentage of total 1 76.28131634600244 44.70478180553607 2 14.525750176945918 17.025676098105897 3 4.42152381380614 7.773722327271184 4 1.807000576560616 4.2359817773046915 5 0.8718283798918546 2.5546817596955296 6 0.48126733775837743 1.6922847445655278 7 0.31116741744179044 1.2765209775669366 8 0.21862320866138704 1.0249957194238353 9 0.1543018397615571 0.8138594571048229 >10 0.8077509273971504 8.435197505253985 >50 0.06494209540072722 2.6588897115614505 >100 0.04991608335438839 5.861879218427798 >500 0.004340514840161639 1.7714145908570302 >1k 2.7128217751010245E-4 0.17011430732516802 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 1.5815665258281676E-4 0.0 0.0 0.0 6 0.0 1.5815665258281676E-4 0.0 0.0 0.0 7 0.0 1.5815665258281676E-4 0.0 0.0 0.0 8 0.0 1.5815665258281676E-4 0.0 0.0 0.0 9 0.0 1.5815665258281676E-4 0.0 0.0 0.0 10 0.0 1.5815665258281676E-4 0.0 0.0 0.0 11 0.0 1.5815665258281676E-4 0.0 0.0 0.0 12 0.0 2.3723497887422513E-4 0.0 0.0 0.0 13 0.0 2.3723497887422513E-4 0.0 0.0 0.0 14 0.0 2.3723497887422513E-4 0.0 0.0 0.0 15 0.0 2.3723497887422513E-4 0.0 1.5815665258281676E-4 0.0 16 0.0 2.3723497887422513E-4 0.0 2.3723497887422513E-4 0.0 17 0.0 2.3723497887422513E-4 0.0 2.3723497887422513E-4 0.0 18 0.0 2.3723497887422513E-4 0.0 2.3723497887422513E-4 0.0 19 0.0 2.3723497887422513E-4 0.0 2.3723497887422513E-4 0.0 20 0.0 2.3723497887422513E-4 0.0 3.953916314570419E-4 0.0 21 0.0 2.3723497887422513E-4 0.0 8.698615892054921E-4 0.0 22 0.0 2.3723497887422513E-4 0.0 0.0013443315469539425 0.0 23 0.0 2.3723497887422513E-4 0.0 0.0015024881995367593 0.0 24 0.0 2.3723497887422513E-4 0.0 0.002056036483576618 0.0 25 0.0 2.3723497887422513E-4 0.0 0.0024514281150336595 0.0 26 0.0 2.3723497887422513E-4 0.0 0.0032422113779477435 0.0 27 0.0 2.3723497887422513E-4 0.0 0.003637603009404785 0.0 28 0.0 2.3723497887422513E-4 0.0 0.004823777903775911 0.0 29 0.0 2.3723497887422513E-4 0.0 0.006721657734769712 0.0 30 0.0 2.3723497887422513E-4 0.0 0.008935850870929147 0.0 31 0.0 2.3723497887422513E-4 0.0 0.013759628774705058 0.0 32 0.0 2.3723497887422513E-4 0.0 0.019136954962520828 0.0 33 0.0 2.3723497887422513E-4 0.0 0.02380257621371392 0.0 34 0.0 2.3723497887422513E-4 0.0 0.028942667422655464 0.0 35 0.0 2.3723497887422513E-4 0.0 0.0359015601362994 0.0 36 0.0 2.3723497887422513E-4 0.0 0.04365123611285742 0.0 37 0.0 2.3723497887422513E-4 0.0 0.05654100329835699 0.0 38 0.0 2.3723497887422513E-4 0.0 0.07291021684067853 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1495 0.0 27.966679 1 CGTCCGG 45 0.00139852 24.443632 10 TTACTCG 55 1.5923248E-4 24.002998 43 GGTATCA 625 0.0 21.829315 1 TGTAGGA 1575 0.0 21.511248 2 GTAGGAC 1530 0.0 20.84898 3 TAGGACA 535 0.0 20.148863 4 TAGGACG 1445 0.0 19.943974 4 GTATTAC 100 1.1208995E-6 19.804823 1 CTGTAGG 1645 0.0 19.664364 1 TCGATCG 90 1.0012807E-5 19.557226 41 ATCAACG 2105 0.0 19.543291 3 TCAACGC 2110 0.0 19.496983 4 GTCCTAC 1430 0.0 19.389336 1 AACGCAG 2170 0.0 19.059275 6 ATTTCGT 745 0.0 18.900942 42 AGACCGT 70 8.125423E-4 18.856516 6 GGACGTG 1470 0.0 18.856514 6 CAACGCA 2195 0.0 18.741974 5 AGGACGT 1510 0.0 18.648386 5 >>END_MODULE