##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062238_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2614906 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.272892027476324 32.0 32.0 32.0 32.0 32.0 2 31.414177412113474 32.0 32.0 32.0 32.0 32.0 3 31.554360653882014 32.0 32.0 32.0 32.0 32.0 4 31.63763401055334 32.0 32.0 32.0 32.0 32.0 5 31.609480034846378 32.0 32.0 32.0 32.0 32.0 6 35.25057803225049 36.0 36.0 36.0 36.0 36.0 7 35.25381983138208 36.0 36.0 36.0 36.0 36.0 8 35.2023357627387 36.0 36.0 36.0 36.0 36.0 9 35.294414789671215 36.0 36.0 36.0 36.0 36.0 10 35.170012994730975 36.0 36.0 36.0 36.0 36.0 11 35.29907881965929 36.0 36.0 36.0 36.0 36.0 12 35.213915911317656 36.0 36.0 36.0 36.0 36.0 13 35.25584246623014 36.0 36.0 36.0 36.0 36.0 14 35.21991077308324 36.0 36.0 36.0 36.0 36.0 15 35.19511523549986 36.0 36.0 36.0 36.0 36.0 16 35.209876760388326 36.0 36.0 36.0 36.0 36.0 17 35.18736887673974 36.0 36.0 36.0 36.0 36.0 18 35.18575466957512 36.0 36.0 36.0 36.0 36.0 19 35.179144489323896 36.0 36.0 36.0 36.0 36.0 20 35.17929286941863 36.0 36.0 36.0 36.0 36.0 21 35.17135835857962 36.0 36.0 36.0 36.0 36.0 22 35.15445794227402 36.0 36.0 36.0 36.0 36.0 23 35.120884268880026 36.0 36.0 36.0 36.0 36.0 24 35.107502143480495 36.0 36.0 36.0 36.0 36.0 25 35.092701229030794 36.0 36.0 36.0 36.0 36.0 26 35.05375948504459 36.0 36.0 36.0 36.0 36.0 27 35.03894212640913 36.0 36.0 36.0 36.0 36.0 28 35.02146616360206 36.0 36.0 36.0 36.0 36.0 29 35.002892264578534 36.0 36.0 36.0 36.0 36.0 30 34.97854645635445 36.0 36.0 36.0 36.0 36.0 31 34.98511801189029 36.0 36.0 36.0 36.0 36.0 32 34.96074734617611 36.0 36.0 36.0 36.0 36.0 33 34.940852940794045 36.0 36.0 36.0 36.0 36.0 34 34.92879246902183 36.0 36.0 36.0 36.0 36.0 35 34.91226720960524 36.0 36.0 36.0 36.0 36.0 36 34.88946065365256 36.0 36.0 36.0 32.0 36.0 37 34.87825489711676 36.0 36.0 36.0 32.0 36.0 38 34.86382722744145 36.0 36.0 36.0 32.0 36.0 39 34.8486224743834 36.0 36.0 36.0 32.0 36.0 40 34.83566675054476 36.0 36.0 36.0 32.0 36.0 41 34.808395024524785 36.0 36.0 36.0 32.0 36.0 42 34.78585578219638 36.0 36.0 36.0 32.0 36.0 43 34.77825627383929 36.0 36.0 36.0 32.0 36.0 44 34.7359017876742 36.0 36.0 36.0 32.0 36.0 45 34.72206955049245 36.0 36.0 36.0 32.0 36.0 46 34.70355225006176 36.0 36.0 36.0 32.0 36.0 47 34.68020418324789 36.0 36.0 36.0 32.0 36.0 48 34.660457393114704 36.0 36.0 36.0 32.0 36.0 49 34.64002109444852 36.0 36.0 36.0 32.0 36.0 50 34.22813363080738 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 7.0 20 21.0 21 54.0 22 167.0 23 450.0 24 1146.0 25 2737.0 26 5868.0 27 10914.0 28 19556.0 29 31405.0 30 48017.0 31 71917.0 32 110497.0 33 190529.0 34 435974.0 35 1685645.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.148789055730866 17.671779801745675 12.12164566467377 26.05778547784969 2 16.065058920398855 19.692297572394665 37.32902605515759 26.913617452048893 3 18.63700332708708 23.347164327507745 28.40624880492562 29.609583540479562 4 12.471165289433188 15.600457990044758 35.851144057296175 36.07723266322588 5 14.52671721277935 36.788549951699984 33.40192725857067 15.282805576949993 6 35.122195784010266 35.28667613547276 16.228065143550314 13.363062936966664 7 30.909562332259743 30.14226897639915 20.058197120661315 18.889971570679787 8 28.19458902155565 33.57906555723227 18.762777705967252 19.46356771524483 9 27.043801956934587 14.390612893924292 18.247692268861673 40.317892880279445 10 15.502754786697635 27.217185494069952 31.660103644379927 25.61995607485249 11 37.41996844246027 21.389602532557575 21.92254712024065 19.26788190474151 12 24.426728914920844 23.520348341393536 28.859813698848065 23.19310904483756 13 29.295163956180453 19.60517892421372 25.330738466315804 25.768918653290022 14 23.27705087678104 19.327195700342575 25.391237772983043 32.00451564989334 15 25.009847390307723 27.40997190721196 22.155060258380225 25.42512044410009 16 25.598621429715973 26.294254848113663 23.581628700022144 24.52549502214822 17 24.04587392433992 26.277885323602458 25.116160963338647 24.560079788718983 18 24.626075995935604 25.66164022145372 25.868645988015615 23.843637794595057 19 25.38607506350133 25.27402514660183 25.378961997104295 23.960937792792553 20 25.47710219239658 24.868895610197097 25.15116251055011 24.502839686856216 21 26.192309089622757 24.654891860316148 24.82384637300399 24.3289526770571 22 25.49127961005099 24.582986921900826 25.308099029181164 24.61763443886702 23 24.410303399283492 24.603312396936943 25.616810406806522 25.369573796973043 24 24.536718170682597 25.10416359928211 25.465786727253324 24.893331502781965 25 24.762639015885508 24.714912507136987 25.56878869891342 24.953659778064086 26 24.477732375487353 25.39516883087084 25.702599913189633 24.424498880452177 27 24.94216780571901 25.15449006900091 25.219311076973323 24.684031048306757 28 24.652725060892386 24.999015243269334 25.60417215612773 24.744087539710556 29 24.524837699090135 25.19572480129229 25.553023906113282 24.726413593504294 30 24.636530548949107 25.268684588023337 25.610001877723125 24.484782985304427 31 25.025593761891013 24.96463529128321 25.09603636092463 24.913734585901153 32 24.78002848309906 25.09067323827749 25.04344360973565 25.085854668887798 33 24.49797276987477 24.89619097953343 25.485812448516153 25.120023802075647 34 24.971891721557483 24.952808686261132 25.622129896194405 24.45316969598698 35 25.36860803738568 24.860750199338025 25.47102093575101 24.299620827525285 36 24.461623771463536 25.349535355080498 25.30253546980764 24.886305403648322 37 25.316948013680268 25.014331545730347 25.159310571384104 24.509409869205285 38 24.730257990153376 24.904910539805254 25.467837084774747 24.89699438526662 39 25.1299293811346 24.98066834373406 25.031760515388456 24.857641759742886 40 25.37351275610883 25.04910314107134 25.231519015612047 24.34586508720779 41 24.517214385227298 25.333046258007546 25.600324604178322 24.54941475258683 42 25.364572198699925 25.250986986653164 25.186583788980858 24.19785702566605 43 24.882055628134093 24.757265587473114 25.487992926397208 24.872685857995588 44 24.55601987599113 25.225092578322045 25.235227146262467 24.983660399424355 45 24.796451039256553 25.42853318545997 25.125685985811806 24.649329789471672 46 24.64301749174135 25.119835523019816 25.179839332057025 25.05730765318181 47 24.85027947830716 25.17863207070939 25.378106461807693 24.59298198917576 48 25.356280183999058 25.4936140333701 24.690530351124906 24.459575431505936 49 24.794938397383532 25.557398891856586 24.908100889390646 24.73956182136924 50 24.873607386682618 25.588060276847624 24.86469680305086 24.673635533418896 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 53.0 1 59.0 2 65.0 3 169.5 4 274.0 5 313.5 6 353.0 7 296.0 8 239.0 9 318.0 10 397.0 11 686.5 12 976.0 13 1852.0 14 2728.0 15 3632.0 16 4536.0 17 4510.0 18 4484.0 19 4620.5 20 4757.0 21 5810.5 22 6864.0 23 8670.5 24 10477.0 25 13832.5 26 17188.0 27 21937.0 28 26686.0 29 30894.5 30 35103.0 31 39813.0 32 44523.0 33 51438.0 34 58353.0 35 66884.5 36 75416.0 37 86195.0 38 96974.0 39 106975.5 40 116977.0 41 127698.5 42 138420.0 43 145131.5 44 151843.0 45 163865.0 46 175887.0 47 185844.5 48 195802.0 49 201506.0 50 207210.0 51 202383.5 52 197557.0 53 194186.0 54 190815.0 55 189000.5 56 187186.0 57 179249.0 58 171312.0 59 156016.0 60 140720.0 61 123061.0 62 105402.0 63 91204.0 64 77006.0 65 64697.0 66 52388.0 67 45249.5 68 38111.0 69 33953.0 70 29795.0 71 23395.5 72 16996.0 73 14995.5 74 12995.0 75 9660.0 76 6325.0 77 5531.0 78 4737.0 79 3954.5 80 3172.0 81 2431.5 82 1691.0 83 1411.0 84 1131.0 85 848.5 86 566.0 87 393.5 88 221.0 89 146.5 90 72.0 91 55.0 92 38.0 93 33.0 94 28.0 95 24.0 96 20.0 97 22.0 98 24.0 99 18.5 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.030173168748704543 2 0.004091925292916839 3 2.2945375474300032E-4 4 7.648458491433345E-5 5 0.0 6 1.529691698286669E-4 7 0.0 8 0.0 9 0.0 10 1.1472687737150016E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 8.795727265148346E-4 17 0.0 18 1.1472687737150016E-4 19 0.0 20 1.912114622858336E-4 21 3.8242292457166724E-5 22 0.0 23 7.648458491433345E-5 24 0.0011090264812578347 25 2.6769604720016705E-4 26 4.206652170288339E-4 27 4.971498019431674E-4 28 0.001797387745486836 29 3.824229245716672E-4 30 0.0014149648209151686 31 4.206652170288339E-4 32 8.413304340576678E-4 33 3.059383396573338E-4 34 6.883612642290011E-4 35 3.8242292457166724E-5 36 2.2945375474300032E-4 37 0.0017209031605725023 38 0.0 39 9.178150189720013E-4 40 7.648458491433345E-5 41 0.0011090264812578347 42 0.004933255726974507 43 0.004359621340117006 44 0.003556533198516505 45 0.0021415683776013364 46 0.0027534450569160042 47 0.0013002379435436686 48 0.00420665217028834 49 0.0031358679814876707 50 0.0014532071133723354 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2614906.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.888416583843664 #Duplication Level Percentage of deduplicated Percentage of total 1 75.32221322011397 40.589948040225984 2 14.56571006004998 15.69846103110912 3 4.490848713094402 7.260141787987481 4 1.842536634300464 3.9716552688070657 5 0.9389428611285177 2.529907202445982 6 0.5909745039549601 1.9108008155733154 7 0.3989680458666187 1.504982938151168 8 0.2863804523759237 1.2346071295282703 9 0.2127587861819363 1.0318710691480597 >10 1.2068968266983398 11.914923543404752 >50 0.08607367062247491 3.2072112054007924 >100 0.049639182233778334 5.316625583872838 >500 0.005846704044606762 2.153347182058645 >1k 0.0022103393339279517 1.6755172022865943 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 3.824229245716672E-5 0.0 8 0.0 0.0 0.0 3.824229245716672E-5 0.0 9 0.0 0.0 0.0 3.824229245716672E-5 3.824229245716672E-5 10 0.0 0.0 0.0 3.824229245716672E-5 3.824229245716672E-5 11 0.0 0.0 0.0 3.824229245716672E-5 3.824229245716672E-5 12 0.0 0.0 0.0 3.824229245716672E-5 7.648458491433343E-5 13 0.0 0.0 0.0 7.648458491433343E-5 7.648458491433343E-5 14 0.0 0.0 0.0 7.648458491433343E-5 1.1472687737150016E-4 15 0.0 0.0 0.0 7.648458491433343E-5 1.5296916982866687E-4 16 0.0 0.0 0.0 7.648458491433343E-5 1.5296916982866687E-4 17 0.0 0.0 0.0 1.1472687737150016E-4 1.5296916982866687E-4 18 0.0 0.0 0.0 1.1472687737150016E-4 1.5296916982866687E-4 19 0.0 0.0 0.0 1.912114622858336E-4 1.5296916982866687E-4 20 0.0 0.0 0.0 2.6769604720016705E-4 1.912114622858336E-4 21 0.0 0.0 0.0 3.0593833965733374E-4 1.912114622858336E-4 22 0.0 0.0 0.0 4.5890750948600063E-4 1.912114622858336E-4 23 0.0 0.0 0.0 7.266035566861677E-4 3.0593833965733374E-4 24 0.0 0.0 0.0 0.0010707841888006682 3.0593833965733374E-4 25 0.0 0.0 0.0 0.001491449405829502 3.0593833965733374E-4 26 0.0 0.0 0.0 0.0018356300379440025 3.0593833965733374E-4 27 0.0 0.0 0.0 0.0021033260851441695 3.0593833965733374E-4 28 0.0 0.0 0.0 0.002485749009715837 3.0593833965733374E-4 29 0.0 0.0 0.0 0.003135867981487671 3.0593833965733374E-4 30 0.0 0.0 0.0 0.003977198415545339 3.0593833965733374E-4 31 0.0 0.0 0.0 0.0057745861610321745 3.441806321145005E-4 32 0.0 0.0 0.0 0.007571973906519011 3.441806321145005E-4 33 0.0 0.0 0.0 0.010019480623777681 3.441806321145005E-4 34 0.0 0.0 0.0 0.013155348605265352 3.824229245716672E-4 35 0.0 0.0 0.0 0.015526370737609688 3.824229245716672E-4 36 0.0 0.0 0.0 0.019274115398412027 3.824229245716672E-4 37 0.0 0.0 0.0 0.025813547408587535 3.824229245716672E-4 38 0.0 0.0 0.0 0.033538490484935214 3.824229245716672E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3005 0.0 28.486792 1 GGTATCA 1345 0.0 22.578506 1 CGCAATA 515 0.0 21.786795 36 TACGAAT 585 0.0 19.5574 41 CTAGCGG 605 0.0 18.908344 29 ATACGAA 595 0.0 18.85856 40 TCAACGC 4445 0.0 18.806904 4 AGTATCG 95 1.598813E-5 18.525583 8 ATCAACG 4525 0.0 18.474762 3 TCTAGCG 620 0.0 18.451235 28 CAACGCA 4540 0.0 18.41337 5 ACCGTCG 540 0.0 18.33261 8 AACGCAG 4590 0.0 18.308643 6 TATCAAC 4660 0.0 18.129425 2 GCGCAAT 630 0.0 17.80916 35 CGCCGGT 655 0.0 17.800823 7 TAGCGGC 645 0.0 17.735733 30 CGAATGC 645 0.0 17.396658 43 CGTCGTA 520 0.0 17.3458 10 GATATAC 470 0.0 17.323763 1 >>END_MODULE