##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062237_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 164245 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.583335870193917 32.0 32.0 32.0 32.0 32.0 2 30.356467472373588 32.0 32.0 32.0 21.0 32.0 3 31.03246369752504 32.0 32.0 32.0 32.0 32.0 4 31.296216018752474 32.0 32.0 32.0 32.0 32.0 5 31.171372035678406 32.0 32.0 32.0 32.0 32.0 6 34.793582757465984 36.0 36.0 36.0 32.0 36.0 7 34.79251118755518 36.0 36.0 36.0 32.0 36.0 8 34.75548114097842 36.0 36.0 36.0 32.0 36.0 9 34.92650613412889 36.0 36.0 36.0 32.0 36.0 10 34.64542604036652 36.0 36.0 36.0 32.0 36.0 11 34.945343846083595 36.0 36.0 36.0 32.0 36.0 12 34.76677524429967 36.0 36.0 36.0 32.0 36.0 13 34.85678102834181 36.0 36.0 36.0 32.0 36.0 14 34.7978629486438 36.0 36.0 36.0 32.0 36.0 15 34.73400712350452 36.0 36.0 36.0 32.0 36.0 16 34.73437851989406 36.0 36.0 36.0 32.0 36.0 17 34.69313525525891 36.0 36.0 36.0 32.0 36.0 18 34.70825900331821 36.0 36.0 36.0 32.0 36.0 19 34.637194435142625 36.0 36.0 36.0 32.0 36.0 20 34.6976041888642 36.0 36.0 36.0 32.0 36.0 21 34.591129105908855 36.0 36.0 36.0 32.0 36.0 22 34.49218545465615 36.0 36.0 36.0 32.0 36.0 23 34.33134646412372 36.0 36.0 36.0 32.0 36.0 24 34.34766963986727 36.0 36.0 36.0 32.0 36.0 25 34.34796188620658 36.0 36.0 36.0 32.0 36.0 26 34.273560838990534 36.0 36.0 36.0 32.0 36.0 27 34.219069073639986 36.0 36.0 36.0 32.0 36.0 28 34.136058936345094 36.0 36.0 36.0 32.0 36.0 29 34.09561934914305 36.0 36.0 36.0 32.0 36.0 30 34.08153064020214 36.0 36.0 36.0 32.0 36.0 31 33.99904411093184 36.0 36.0 36.0 32.0 36.0 32 33.94652500837164 36.0 36.0 36.0 32.0 36.0 33 33.863941063654906 36.0 36.0 36.0 32.0 36.0 34 33.76229413376358 36.0 36.0 36.0 32.0 36.0 35 33.67289719626168 36.0 36.0 36.0 27.0 36.0 36 33.61376602027459 36.0 36.0 36.0 27.0 36.0 37 33.483485037596274 36.0 36.0 36.0 21.0 36.0 38 33.31825017504338 36.0 36.0 36.0 21.0 36.0 39 32.98197205394381 36.0 36.0 36.0 14.0 36.0 40 32.78866327742092 36.0 36.0 36.0 14.0 36.0 41 32.72822916983774 36.0 36.0 36.0 14.0 36.0 42 32.55281439313221 36.0 36.0 36.0 14.0 36.0 43 32.539084903650036 36.0 36.0 36.0 14.0 36.0 44 32.603726140826204 36.0 36.0 36.0 14.0 36.0 45 32.20856038235563 36.0 32.0 36.0 14.0 36.0 46 32.39857529909586 36.0 36.0 36.0 14.0 36.0 47 32.33912143444245 36.0 36.0 36.0 14.0 36.0 48 32.206429419464826 36.0 32.0 36.0 14.0 36.0 49 32.423854607446195 36.0 36.0 36.0 14.0 36.0 50 31.487497336296386 36.0 32.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 2.0 21 8.0 22 30.0 23 68.0 24 174.0 25 458.0 26 962.0 27 1705.0 28 3116.0 29 4742.0 30 7547.0 31 11961.0 32 18249.0 33 27122.0 34 40051.0 35 48049.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.885935263847024 17.034195061051737 13.384488901068787 23.695380774032458 2 12.809459443003446 22.55324589924378 36.87818896966597 27.759105688086798 3 19.618253219276085 27.922311181466714 27.757922615604734 24.70151298365247 4 13.026271728210903 18.750038052908767 34.20134555085391 34.02234466802642 5 13.225364546865961 38.22216810252976 33.37818502846358 15.174282322140703 6 33.430545830923315 32.82291698377424 18.63009528448355 15.1164419008189 7 27.5819659654784 31.86702791561387 22.284392218941214 18.266613899966515 8 29.20880392097172 32.36567323206186 21.447228226125606 16.978294620840817 9 27.65259216414503 16.697007519254772 17.427014520989985 38.22338579561021 10 15.666934560775431 29.027544385183017 32.79998051679209 22.50554053724946 11 34.732259733934065 22.784255228469664 20.004870772321837 22.478614265274437 12 22.52975737465372 25.06803860087065 29.524186428810616 22.878017595665014 13 32.21894121586654 21.02103564796493 23.542269171055434 23.217753965113094 14 25.28174373649122 19.496483911230175 23.95445827879083 31.26731407348778 15 27.013303296904017 24.75326493957198 26.907972845444306 21.325458918079697 16 26.253462814697553 24.79527535084782 27.173429936984384 21.777831897470243 17 24.879296173399496 25.021766263813205 28.688240129075464 21.410697433711835 18 27.010423516231945 22.14266578992231 29.946908258444754 20.90000243540099 19 23.56114341380255 31.33063411367165 25.04307589272124 20.065146579804562 20 23.297654708847812 23.194759017072162 32.323859623487 21.18372665059302 21 23.513044537124415 28.141495935949344 22.823830253584585 25.521629273341656 22 22.204633322171148 28.91899296782246 23.676824256446164 25.199549453560234 23 21.234131937045266 27.902219245639138 23.595847666595635 27.26780115071996 24 21.368598583788454 30.693310440145883 23.810741532260522 24.12734944380514 25 26.412532573488225 24.44655512530138 22.034899296169115 27.10601300504128 26 21.373818062261403 24.45401021656935 25.770961319508288 28.401210401660954 27 26.73355942110166 27.500106549441984 24.28353110939279 21.482802920063566 28 24.85159184866326 23.023203424194637 25.247346918894564 26.877857808247533 29 22.969344576699445 27.375566988340587 28.05321318761606 21.60187524734391 30 27.982148510752296 23.746377341029202 26.760186064635544 21.51128808358296 31 22.63143474687205 24.956619684008647 26.19684008645621 26.21510548266309 32 21.772484839628845 27.425659384817706 26.743747107961326 24.05810866759212 33 21.735212639654176 26.448293707571008 26.422722152881366 25.393771499893454 34 20.40975372157448 28.48305884501811 28.30223142256994 22.80495601083747 35 24.627233705744466 26.763676215409905 26.374014429663 22.235075649182622 36 24.364820846905538 27.37617583488082 26.10307771926086 22.155925598952784 37 25.902924916587516 26.615888556050756 26.1464650154648 21.334721511896934 38 24.83302383634205 26.961551340984506 22.912113001917866 25.293311820755576 39 22.975433042101738 26.71679503181223 26.68391731863984 23.623854607446194 40 26.055904970074828 26.499150648733888 22.928831061293327 24.516113319897954 41 21.664850252369963 26.40904026351199 26.248302819602664 25.677806664515384 42 27.93828430865152 27.018272374678055 24.471343241778648 20.57210007489177 43 26.312296404542273 23.122964045422716 23.768989557646055 26.795749992388956 44 25.017809411893644 24.90273321196549 28.888997132228035 21.190460243912835 45 28.062687603124637 24.587958086493796 25.555427019720778 21.79392729066079 46 24.015489150288595 24.701054528628138 29.04398334185724 22.23947297922603 47 27.456877918693646 23.272224691463258 28.270915655461724 20.99998173438137 48 23.323753622835433 31.172824472101123 23.97951728001169 21.523904625051753 49 22.23203195401739 24.346671862441852 32.08918872841521 21.332107455125552 50 22.72054749480939 30.161532888047297 22.29981916597154 24.81810045117177 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 18.0 1 18.0 2 18.0 3 91.5 4 165.0 5 142.5 6 120.0 7 110.0 8 100.0 9 109.0 10 118.0 11 151.0 12 184.0 13 257.5 14 331.0 15 385.0 16 439.0 17 483.0 18 527.0 19 534.0 20 541.0 21 692.0 22 843.0 23 889.5 24 936.0 25 1129.0 26 1322.0 27 1592.0 28 1862.0 29 2185.0 30 2508.0 31 2665.0 32 2822.0 33 3295.0 34 3768.0 35 4333.0 36 4898.0 37 5410.5 38 5923.0 39 6071.0 40 6219.0 41 6596.5 42 6974.0 43 7526.0 44 8078.0 45 12010.5 46 15943.0 47 20056.5 48 24170.0 49 21452.5 50 18735.0 51 15112.5 52 11490.0 53 9925.0 54 8360.0 55 8112.0 56 7864.0 57 7492.5 58 7121.0 59 6661.5 60 6202.0 61 5418.0 62 4634.0 63 4061.0 64 3488.0 65 2945.5 66 2403.0 67 2071.0 68 1739.0 69 1462.0 70 1185.0 71 993.5 72 802.0 73 672.0 74 542.0 75 441.5 76 341.0 77 265.0 78 189.0 79 171.5 80 154.0 81 120.0 82 86.0 83 59.5 84 33.0 85 27.5 86 22.0 87 15.0 88 8.0 89 8.5 90 9.0 91 5.5 92 2.0 93 2.5 94 3.0 95 2.5 96 2.0 97 3.0 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.024353861609181404 2 0.004261925781606746 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 6.088465402295352E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 6.088465402295352E-4 19 0.0 20 6.088465402295352E-4 21 0.0 22 0.0 23 0.0 24 0.0024353861609181407 25 6.088465402295352E-4 26 0.0012176930804590703 27 0.0012176930804590703 28 0.0012176930804590703 29 0.0 30 6.088465402295352E-4 31 0.0 32 6.088465402295352E-4 33 0.0 34 0.0 35 0.0 36 0.0 37 6.088465402295352E-4 38 0.0 39 0.0 40 0.0012176930804590703 41 0.0012176930804590703 42 0.004870772321836281 43 0.006088465402295351 44 0.003653079241377211 45 0.0012176930804590703 46 6.088465402295352E-4 47 0.0012176930804590703 48 0.005479618862065817 49 0.005479618862065817 50 0.003653079241377211 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 164245.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.98469309214182 #Duplication Level Percentage of deduplicated Percentage of total 1 86.12146974781622 55.10455810458198 2 9.378273088104622 12.001318505533348 3 2.0298168376407717 3.8963162216911993 4 0.6935843730168471 1.775151329639543 5 0.4197309316583497 1.342817742171913 6 0.2528370508855157 0.9706620661939179 7 0.16789174933328144 0.7519751437654973 8 0.16189561168313973 0.8287072821208213 9 0.09294007319711396 0.535206785353068 >10 0.5986140197388755 6.945538950445982 >50 0.03397809127059136 1.4176265745832213 >100 0.03597680252180262 4.706878311009062 >500 0.008994200630450654 4.178065872046354 >1k 0.003997422502422513 5.545177110864093 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 3180 1.9361319979299216 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 3124 1.9020365916770678 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 1348 0.8207251362294135 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 1020 0.6210234710341258 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 988 0.6015403817467807 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 930 0.5662272824134676 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 868 0.5284787969192365 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 780 0.47490030137903744 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 698 0.4249748850802155 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 677 0.4121891077353953 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 547 0.33303905750555574 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATA 540 0.328777131723949 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 506 0.3080763493561448 No Hit ACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG 405 0.24658284879296175 No Hit GGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATG 376 0.22892629912630524 No Hit CAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTA 374 0.22770860604584614 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 354 0.21553167524125547 No Hit ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGC 354 0.21553167524125547 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 321 0.19543973941368079 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 314 0.19117781363207403 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 294 0.17900088282748333 No Hit ATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACT 284 0.17291241742518798 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 264 0.16073548662059728 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 236 0.1436877834941703 No Hit GTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACA 224 0.13638162501141587 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT 210 0.12785777344820237 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 203 0.12359584766659563 No Hit ACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAA 192 0.11689853572407075 No Hit GAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAG 188 0.11446314956315262 No Hit GATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTAC 188 0.11446314956315262 No Hit CCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTG 187 0.11385430302292307 No Hit AAAAAGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 185 0.112636609942464 No Hit TGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGC 175 0.10654814454016866 No Hit AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA 172 0.10472160491948004 No Hit GTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACT 170 0.10350391183902097 No Hit GTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATG 170 0.10350391183902097 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 6.088465402295352E-4 0.0 22 0.0 0.0 0.0 6.088465402295352E-4 0.0 23 0.0 0.0 0.0 6.088465402295352E-4 0.0 24 0.0 0.0 0.0 6.088465402295352E-4 0.0 25 0.0 0.0 0.0 6.088465402295352E-4 0.0 26 0.0 0.0 0.0 6.088465402295352E-4 0.0 27 0.0 0.0 0.0 6.088465402295352E-4 0.0 28 0.0 0.0 0.0 6.088465402295352E-4 0.0 29 0.0 0.0 0.0 0.0012176930804590703 0.0 30 0.0 0.0 0.0 0.0018265396206886054 0.0 31 0.0 0.0 0.0 0.004261925781606746 0.0 32 0.0 0.0 0.0 0.006697311942524886 0.0 33 0.0 0.0 0.0 0.009132698103443027 0.0 34 0.0 0.0 0.0 0.012785777344820238 6.088465402295352E-4 35 0.0 0.0 0.0 0.015830010045967915 6.088465402295352E-4 36 0.0 0.0 0.0 0.020700782367804194 6.088465402295352E-4 37 0.0 0.0 0.0 0.028615787390788152 6.088465402295352E-4 38 0.0 0.0 0.0 0.044445797436756064 0.0012176930804590703 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTCCT 30 1.2962421E-4 36.666668 44 GCGTAGA 25 0.0023468959 35.2 43 TCACGTC 25 0.0023468959 35.2 42 TGGTATA 145 0.0 31.862068 44 CACGTCC 30 0.0057307505 29.333336 43 AAAAAGT 105 3.0213414E-9 23.047619 1 GTCCTAC 70 3.1935888E-5 22.0 1 CCTACAG 70 3.1935888E-5 22.0 3 ATTGTCT 50 0.0025710412 22.0 3 TGCACTG 50 0.0025710412 22.0 5 TGTAGGA 90 4.0375744E-7 21.999998 2 CTGGAAT 65 4.9072446E-4 20.307693 10 TTGTCTT 55 0.004467416 20.0 4 TTCTAAA 70 8.0825645E-4 18.857143 17 AAAGTAC 140 4.0054147E-9 18.857143 3 ATTTCTA 70 8.0825645E-4 18.857143 15 TCACGGA 60 0.007385541 18.333334 36 CACGGAA 60 0.007385541 18.333334 37 ATCACGG 60 0.007385541 18.333334 35 GGCTGGT 60 0.007385541 18.333334 7 >>END_MODULE