##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062234_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1641125 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.302240840886586 32.0 32.0 32.0 32.0 32.0 2 31.48750095209079 32.0 32.0 32.0 32.0 32.0 3 31.596082565313427 32.0 32.0 32.0 32.0 32.0 4 31.666690227740116 32.0 32.0 32.0 32.0 32.0 5 31.646279838525402 32.0 32.0 32.0 32.0 32.0 6 35.29431457079747 36.0 36.0 36.0 36.0 36.0 7 35.30256318074492 36.0 36.0 36.0 36.0 36.0 8 35.253085535836696 36.0 36.0 36.0 36.0 36.0 9 35.32555350750248 36.0 36.0 36.0 36.0 36.0 10 35.21613771041206 36.0 36.0 36.0 36.0 36.0 11 35.33073958412674 36.0 36.0 36.0 36.0 36.0 12 35.250331936933506 36.0 36.0 36.0 36.0 36.0 13 35.28460415873258 36.0 36.0 36.0 36.0 36.0 14 35.250829156828395 36.0 36.0 36.0 36.0 36.0 15 35.23333688780562 36.0 36.0 36.0 36.0 36.0 16 35.24151847056135 36.0 36.0 36.0 36.0 36.0 17 35.22932134968391 36.0 36.0 36.0 36.0 36.0 18 35.22143956127656 36.0 36.0 36.0 36.0 36.0 19 35.209453880722066 36.0 36.0 36.0 36.0 36.0 20 35.213875238022695 36.0 36.0 36.0 36.0 36.0 21 35.204374438266434 36.0 36.0 36.0 36.0 36.0 22 35.18796800974941 36.0 36.0 36.0 36.0 36.0 23 35.155897935867166 36.0 36.0 36.0 36.0 36.0 24 35.137015766623506 36.0 36.0 36.0 36.0 36.0 25 35.12950933048975 36.0 36.0 36.0 36.0 36.0 26 35.082155838220736 36.0 36.0 36.0 36.0 36.0 27 35.07456287607586 36.0 36.0 36.0 36.0 36.0 28 35.05358153705537 36.0 36.0 36.0 36.0 36.0 29 35.0312852464011 36.0 36.0 36.0 36.0 36.0 30 35.01243049737223 36.0 36.0 36.0 36.0 36.0 31 35.01875542691751 36.0 36.0 36.0 36.0 36.0 32 34.99488216924366 36.0 36.0 36.0 36.0 36.0 33 34.971710869068474 36.0 36.0 36.0 36.0 36.0 34 34.96414228044787 36.0 36.0 36.0 36.0 36.0 35 34.95032249219285 36.0 36.0 36.0 36.0 36.0 36 34.923414730748725 36.0 36.0 36.0 36.0 36.0 37 34.913530657323484 36.0 36.0 36.0 36.0 36.0 38 34.891422042806 36.0 36.0 36.0 32.0 36.0 39 34.882323406200015 36.0 36.0 36.0 32.0 36.0 40 34.86727641099855 36.0 36.0 36.0 32.0 36.0 41 34.840069464544136 36.0 36.0 36.0 32.0 36.0 42 34.80629507197806 36.0 36.0 36.0 32.0 36.0 43 34.80359936019499 36.0 36.0 36.0 32.0 36.0 44 34.758736842105264 36.0 36.0 36.0 32.0 36.0 45 34.73988818645746 36.0 36.0 36.0 32.0 36.0 46 34.72365115393404 36.0 36.0 36.0 32.0 36.0 47 34.698512910351134 36.0 36.0 36.0 32.0 36.0 48 34.66969121791454 36.0 36.0 36.0 32.0 36.0 49 34.64840703785513 36.0 36.0 36.0 32.0 36.0 50 34.2399439408942 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 4.0 20 20.0 21 40.0 22 149.0 23 345.0 24 817.0 25 1946.0 26 4018.0 27 7257.0 28 12402.0 29 19649.0 30 29534.0 31 42915.0 32 64954.0 33 110376.0 34 256576.0 35 1090120.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.32819281221047 18.230604183937192 12.534683278880381 25.90651972497196 2 16.12408457553189 19.93526064537044 37.14725156333598 26.793403215761693 3 18.374425239379498 23.208812529019852 28.854963506585147 29.56179872501551 4 12.716711229620675 16.076603596071962 35.28922860186068 35.91745657244669 5 14.713870058648792 36.583258435524414 33.11045776525249 15.592413740574301 6 34.87132583683602 34.963275125188744 16.375808745480228 13.789590292495014 7 30.632828090486708 30.392809810343515 20.06739279457689 18.906969304592884 8 28.247939675527455 33.225805468809504 18.96820778429431 19.558047071368726 9 27.06107091172214 14.437474293548632 18.692908827785818 39.80854596694341 10 16.60921623886054 26.867727930535455 30.80655038464468 25.716505445959324 11 37.02923299565847 21.40976464315637 21.936171833346027 19.624830527839134 12 24.27401934648488 23.77192474674385 28.56558763043644 23.38846827633483 13 29.466737756112423 19.476639500342753 25.19454642394699 25.862076319597836 14 23.527580166044633 19.630862975093304 25.05263157894737 31.788925279914693 15 25.151831822682613 27.300418919948203 22.089115698072966 25.458633559296214 16 25.704431756555014 26.037864616022084 23.529562308437583 24.728141318985323 17 24.055571635311143 26.292695559448546 24.960865260111202 24.6908675451291 18 24.637199870332772 25.3663952266861 25.933689349494614 24.062715553486512 19 25.561550765480995 25.10381597989184 25.32238555868688 24.012247695940285 20 25.745617936996762 24.554664430797953 25.057613023285292 24.642104608919997 21 26.543742859319064 24.3355015614289 24.76551146317313 24.355244116078907 22 25.845075786426996 24.296199253560818 25.134709421890474 24.724015538121716 23 24.516414045243355 24.395643232538657 25.634610404448168 25.45333231776982 24 24.69808489026005 24.912574256279452 25.431979755128705 24.957361098331795 25 24.921029540801403 24.47145851613532 25.46651067563615 25.14100126742712 26 24.614211871032058 25.36711187048365 25.701639306303438 24.317036952180857 27 25.08494240490594 24.93553151765388 25.145511092478756 24.834014984961417 28 24.777679334201856 24.794802016698576 25.65727336210269 24.770245286996875 29 24.627235823383813 25.048290250914317 25.505112977860218 24.819360947841655 30 24.65736563346227 25.04180102711095 25.64182247603448 24.659010863392293 31 25.140757531441942 24.771436579896655 24.97952617724481 25.108279711416593 32 25.00670277226661 24.869295940801113 24.908659494294113 25.215341792638164 33 24.621767681968606 24.625179983681885 25.39757885006651 25.355473484282996 34 25.184554628474697 24.821325527248884 25.563992241850503 24.430127602425912 35 25.5664864041435 24.59763881483738 25.563256912179146 24.272617868839973 36 24.491232217958203 25.133902293674694 25.2434614854959 25.131404002871204 37 25.376546677894922 24.899914569391957 25.13530575261197 24.58823300010115 38 24.820047223703252 24.667042425165665 25.49092847893975 25.021981872191333 39 25.412615058758725 24.68134527803607 24.902840624501103 25.003199038704103 40 25.548193365742133 24.912833812072012 25.149867346528403 24.38910547565745 41 24.644278878291004 25.257281230976968 25.555556232606975 24.542883658125053 42 25.579037234246755 25.190077286213707 25.07588161918975 24.155003860349787 43 25.130845068105245 24.431481302058483 25.3430246127053 25.094649017130973 44 24.711331455289205 25.01930144314468 25.167619399306183 25.10174770225993 45 25.022058429244847 25.14472035761467 25.012491651920428 24.820729561220062 46 24.84155415554352 25.010770234788072 25.06701310160216 25.080662508066247 47 24.95614240875214 24.936643375477647 25.39803925033529 24.709174965434915 48 25.58190834494164 25.35839509197071 24.448803399741386 24.610893163346265 49 24.91694514113842 25.433737700203036 24.762900619346727 24.88641653931182 50 25.065047913043585 25.552404548661933 24.65501755531967 24.727529982974815 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 175.0 1 123.0 2 71.0 3 171.5 4 272.0 5 282.5 6 293.0 7 249.0 8 205.0 9 285.5 10 366.0 11 607.0 12 848.0 13 1607.5 14 2367.0 15 2960.5 16 3554.0 17 3576.5 18 3599.0 19 3443.0 20 3287.0 21 4045.0 22 4803.0 23 5841.5 24 6880.0 25 8675.0 26 10470.0 27 13136.0 28 15802.0 29 18481.0 30 21160.0 31 24160.5 32 27161.0 33 30945.5 34 34730.0 35 39959.5 36 45189.0 37 52336.0 38 59483.0 39 65164.5 40 70846.0 41 77290.5 42 83735.0 43 87324.0 44 90913.0 45 99006.5 46 107100.0 47 113530.0 48 119960.0 49 124443.0 50 128926.0 51 126600.5 52 124275.0 53 123209.5 54 122144.0 55 121751.5 56 121359.0 57 116563.5 58 111768.0 59 101867.0 60 91966.0 61 80287.5 62 68609.0 63 59325.0 64 50041.0 65 42085.5 66 34130.0 67 29362.0 68 24594.0 69 21755.5 70 18917.0 71 14969.0 72 11021.0 73 9577.0 74 8133.0 75 6100.0 76 4067.0 77 3576.5 78 3086.0 79 2639.5 80 2193.0 81 1675.0 82 1157.0 83 956.5 84 756.0 85 579.5 86 403.0 87 283.0 88 163.0 89 104.5 90 46.0 91 37.0 92 28.0 93 26.5 94 25.0 95 26.0 96 27.0 97 20.0 98 13.0 99 11.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03442760301622363 2 0.0050575062837992235 3 4.265366745372839E-4 4 6.0933810648183415E-5 5 0.0 6 1.8280143194455024E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 9.140071597227512E-4 17 0.0 18 6.0933810648183415E-5 19 0.0 20 1.8280143194455024E-4 21 0.0 22 0.0 23 0.0 24 0.0010968085916673014 25 3.046690532409171E-4 26 2.4373524259273366E-4 27 7.921395384263843E-4 28 0.0016452128875009521 29 4.265366745372839E-4 30 0.0010358747810191179 31 3.046690532409171E-4 32 7.921395384263843E-4 33 2.4373524259273366E-4 34 7.31205727778201E-4 35 0.0 36 1.8280143194455024E-4 37 0.0016452128875009521 38 0.0 39 4.265366745372839E-4 40 4.265366745372839E-4 41 0.001340543834260035 42 0.00499657247315104 43 0.0037778962601873714 44 0.0034122933962982714 45 0.0017670805087973188 46 0.0017061466981491357 47 0.0010968085916673014 48 0.0035950948282428216 49 0.00249828623657552 50 0.0016452128875009521 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1641125.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.003436600726154 #Duplication Level Percentage of deduplicated Percentage of total 1 78.10729962708214 44.52384502346298 2 13.231373762662777 15.084675508409182 3 3.7900592120706205 6.481392000247972 4 1.6004541378825934 3.649255439246409 5 0.8149609854980657 2.3227788434452146 6 0.5217706255392712 1.7845631263829442 7 0.34749422427837284 1.3865855487939518 8 0.24515508862944474 1.1179746041627163 9 0.18991161753368502 0.974305336484049 >10 1.01876206042698 10.329685695972596 >50 0.07227602928634022 2.8436412120432806 >100 0.054025672822980486 6.363941421587646 >500 0.004950333153203921 2.037935037856668 >1k 0.0015066231335838021 1.099421201904434 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2186762129636682E-4 2 0.0 0.0 0.0 0.0 1.2186762129636682E-4 3 0.0 0.0 0.0 0.0 1.2186762129636682E-4 4 0.0 0.0 0.0 0.0 1.2186762129636682E-4 5 0.0 0.0 0.0 0.0 1.2186762129636682E-4 6 0.0 0.0 0.0 0.0 4.2653667453728387E-4 7 0.0 0.0 0.0 0.0 4.2653667453728387E-4 8 0.0 0.0 0.0 0.0 4.2653667453728387E-4 9 0.0 0.0 0.0 0.0 4.2653667453728387E-4 10 0.0 0.0 0.0 0.0 4.2653667453728387E-4 11 0.0 0.0 0.0 6.093381064818341E-5 4.2653667453728387E-4 12 0.0 0.0 0.0 6.093381064818341E-5 6.093381064818342E-4 13 0.0 0.0 0.0 6.093381064818341E-5 6.702719171300175E-4 14 0.0 0.0 0.0 6.093381064818341E-5 6.702719171300175E-4 15 0.0 0.0 0.0 6.093381064818341E-5 7.921395384263843E-4 16 0.0 0.0 0.0 1.2186762129636682E-4 7.921395384263843E-4 17 0.0 0.0 0.0 1.2186762129636682E-4 7.921395384263843E-4 18 0.0 0.0 0.0 1.8280143194455024E-4 7.921395384263843E-4 19 0.0 0.0 0.0 6.093381064818342E-4 7.921395384263843E-4 20 0.0 0.0 0.0 8.530733490745677E-4 8.530733490745677E-4 21 0.0 0.0 0.0 9.749409703709345E-4 8.530733490745677E-4 22 0.0 0.0 0.0 0.0012796100236118517 8.530733490745677E-4 23 0.0 0.0 0.0 0.0018889481300936857 8.530733490745677E-4 24 0.0 0.0 0.0 0.0023154848046309695 8.530733490745677E-4 25 0.0 0.0 0.0 0.003107624343057354 8.530733490745677E-4 26 0.0 0.0 0.0 0.003716962449539188 9.140071597227512E-4 27 0.0 0.0 0.0 0.004509101987965573 9.140071597227512E-4 28 0.0 0.0 0.0 0.005484042958336507 9.140071597227512E-4 29 0.0 0.0 0.0 0.007129255845837459 9.140071597227512E-4 30 0.0 0.0 0.0 0.009749409703709347 9.140071597227512E-4 31 0.0 0.0 0.0 0.01498971741945312 9.749409703709345E-4 32 0.0 0.0 0.0 0.019925356081955975 9.749409703709345E-4 33 0.0 0.0 0.0 0.02589686952547795 9.749409703709345E-4 34 0.0 0.0 0.0 0.03314799299261178 0.001035874781019118 35 0.0 0.0 0.0 0.04143499124076472 0.001035874781019118 36 0.0 0.0 0.0 0.052768680021326834 0.001035874781019118 37 0.0 0.0 0.0 0.06745372838753903 0.001035874781019118 38 0.0 0.0 0.0 0.0851854672861604 0.001035874781019118 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 970 0.0 27.229372 1 GTATCAA 2105 0.0 26.140629 1 TAGGACG 155 1.8189894E-12 21.289366 4 TAACGGC 85 6.1147857E-6 20.706211 36 CGCAATA 335 0.0 19.045078 36 GTATAGA 215 0.0 18.42732 1 CGAGCCG 440 0.0 17.999739 15 TTAACGG 100 2.4835512E-5 17.60028 35 ATCAACG 3125 0.0 17.458414 3 TCTATAC 215 0.0 17.394567 3 TCAACGC 3140 0.0 17.375013 4 CAACGCA 3170 0.0 17.210583 5 ATACCGT 490 0.0 17.060457 6 TATCAAC 3275 0.0 16.860823 2 TACACCG 105 3.777127E-5 16.76115 5 GACGGCC 645 0.0 16.712934 11 AACGCAG 3265 0.0 16.709816 6 CAATACG 385 0.0 16.572199 38 GCATTCG 640 0.0 16.49976 22 CGGATCG 80 0.0019889516 16.49976 26 >>END_MODULE