FastQCFastQC Report
Thu 2 Feb 2017
SRR4062233_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062233_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1629
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.1841620626151013No Hit
CTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAACACCTCCTC20.12277470841006752No Hit
CCCCGAGTCTGCCTCGGTGCTTTCTTCGCTGCTCTTTATTTCTTGACATG20.12277470841006752No Hit
GTATAAGAAAAGTGCCTTTCTTTCCAGGTCTCTGTGCACATCTGACTCCC20.12277470841006752No Hit
ACTCAGACCCGCGCGGGCCCACACTCGATGCGGTATTTCGAGACCGCCGT20.12277470841006752No Hit
GAGAAACCCTGTCTCAAAAAACAAACAAACAAAACCAAAAGCCTAAACAA20.12277470841006752No Hit
CCATGGCATATCCCCAAATTTAGCTAAAATAATCAGTCTCAAATAATGAT20.12277470841006752No Hit
GCTGCGGGAGATCCGCCTGCAGCCGCAGGAGGCGCCGCTGGCCGCCGAGC20.12277470841006752No Hit
AAAGTCTATAACTGTATAATTACAGAAAAATAAGGAGATGGACAAGCGCA20.12277470841006752No Hit
TACATGAACTGTACAAATTTACACCAGTTCATAATTTACCAAATAAAAGA20.12277470841006752No Hit
GTATAATACCTTGGAATACTGCCTGTTGCATGTGCTGGGCACATGCCTCC20.12277470841006752No Hit
GCCCCACAGTGCGAGAGCGCGAGCGCTCACCCGGCTCACCGCTGCCTCCT20.12277470841006752No Hit
CTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC20.12277470841006752No Hit
GATATACACTGTTCTACAATGCCGGTTTCCAACGAATGTGTTTTTCAGTG20.12277470841006752No Hit
GTACATGGGAGACGCAGGCTAGGGAGCCTGTGGCTGCGGACATGAACTCG20.12277470841006752No Hit
AGGTGGGCCTCCTCGACCTCCAATGGGAATGAGACCTCCTGTAATGTCGC20.12277470841006752No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20.12277470841006752No Hit
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA20.12277470841006752No Hit
GAAGCAAGCTTTCTTACTACAGCAGCTTCCTGGGGCACACAGAGTATCTC20.12277470841006752No Hit
CTTTGCTGCCAGACCTCCGCCATCATGGGTCGCATGCACGCTCCCGGGAA20.12277470841006752No Hit
GTTCCAGTAGTGACTGATTCACACTCTTTTCCAAGTGCAGTGCACACTCC20.12277470841006752No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)