FastQCFastQC Report
Thu 2 Feb 2017
SRR4062229_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062229_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1119
Sequences flagged as poor quality0
Sequence length50
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG90.8042895442359249No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT60.5361930294906166No Hit
GTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATAT60.5361930294906166No Hit
GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG50.44682752457551383No Hit
TTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC50.44682752457551383No Hit
CTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTG40.3574620196604111No Hit
GGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTT40.3574620196604111No Hit
TTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATG40.3574620196604111No Hit
GTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCC40.3574620196604111No Hit
GTACATGGAGCGCCATTTCGTGACGCCGCGAGACCGAGAATCTGTAGGAG30.2680965147453083No Hit
CCTCTGACACTGGCAGGCCGAGCCCTCGTAACCGGGCTTGCAACTACATT30.2680965147453083No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC30.2680965147453083No Hit
CCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATG30.2680965147453083No Hit
CCATTATTCCTAGCTGCGGTATCCAGGCGGCTCGGGCCTGCTTTGAACAC30.2680965147453083No Hit
TATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATG30.2680965147453083No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC30.2680965147453083No Hit
CCCTGACGCACCGCCGTGATGCCCAGGGAAGACAGGGCGACCTGGAAGTC30.2680965147453083No Hit
TTTTCTAGCTGTGTAGCTGAAAATGCCATTGACTTCTGACCTGCCTCCGC20.17873100983020554No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG20.17873100983020554No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCCCCGGCCGGAGCCGGG20.17873100983020554No Hit
TCCACGGCCTCCTCGACCCCTTCCAAGACCACCTCGGCCTCGGATAGGCC20.17873100983020554No Hit
GGCATGGCCTGCCTCCTCACCCGAGTACAGGGTCCATCCACTAAAGCCCT20.17873100983020554No Hit
ATGTAGCACCAGGGCCCGCGCGGGTCCTGGTCCGGGTTCCGGCAGTAGTT20.17873100983020554No Hit
TGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAG20.17873100983020554No Hit
CTATCAATCTGTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGT20.17873100983020554No Hit
CCTCGAGACCGTAAGAAGCCCGCACCCTTTCCGGAAGATAGCTAGAGAAG20.17873100983020554No Hit
GAGGAAAGCCATTCGCCCTGGGCCTGGACTAGACCTCGTCGGGCCGGCGG20.17873100983020554No Hit
GCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTT20.17873100983020554No Hit
CGTCTAGCTTGCAGAGCAGCTCTCGTGGCCATCTCAAAAACCTCTCTCAC20.17873100983020554No Hit
GGGCATGGCCTGCCTCCTCACCCGAGTACAGGGTCCATCCACTAAAGCCC20.17873100983020554No Hit
TGCTTACACCACATGAAACACTGTCTCTTCTATAGGATCATTTATTTCAC20.17873100983020554No Hit
GGGTCGGTCCGGCCGCATGCACTCTCCCGTTCCGCGCGAGCGCCCGCCCG20.17873100983020554No Hit
TCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAG20.17873100983020554No Hit
ACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACG20.17873100983020554No Hit
ATGTGGAACTGCAGATCCGCTCCTACGACCGCCAGACCGGTCGCCCCGGC20.17873100983020554No Hit
AAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG20.17873100983020554No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG20.17873100983020554No Hit
CTCAAGTACTCTGCCGACGAGGCTCGTTCACTCAAAGCATACGGCGAATT20.17873100983020554No Hit
ACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGCCGACCCATTCGAACG20.17873100983020554No Hit
GGGCCTAAGCCGCGCCAGGCGAGGGACGGACATTCATGGCGAATGGCGGC20.17873100983020554No Hit
GTCTGTGTTCAGACACACCAGAAGTGGACATCAGATCCCATTACAGATGG20.17873100983020554No Hit
CCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTT20.17873100983020554No Hit
CTCCGCCGCCGCCTCCTCCTCCTCTCTCGCGCTCTCTGTCCCGCCTGGTC20.17873100983020554No Hit
GAGTACATGGAGCGCCATTTCGTGACGCCGCGAGACCGAGAATCTGTAGG20.17873100983020554No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG20.17873100983020554No Hit
GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAG20.17873100983020554No Hit
ACGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCA20.17873100983020554No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA20.17873100983020554No Hit
CAGAAGGACCCTGGCTGGTCAGACAGGTTGGACATTATTAATAATCGTGG20.17873100983020554No Hit
TCCCTGACGCACCGCCGTGATGCCCAGGGAAGACAGGGCGACCTGGAAGT20.17873100983020554No Hit
GCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGC20.17873100983020554No Hit
CTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTC20.17873100983020554No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)