##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062220_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1561835 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.902328991218663 32.0 32.0 32.0 32.0 32.0 2 31.313118863388258 32.0 32.0 32.0 32.0 32.0 3 31.48295754673189 32.0 32.0 32.0 32.0 32.0 4 31.59120649748533 32.0 32.0 32.0 32.0 32.0 5 31.510474537963358 32.0 32.0 32.0 32.0 32.0 6 35.19600277878265 36.0 36.0 36.0 36.0 36.0 7 35.20406829146485 36.0 36.0 36.0 36.0 36.0 8 35.13928231855478 36.0 36.0 36.0 36.0 36.0 9 35.2614008522027 36.0 36.0 36.0 36.0 36.0 10 35.106063700711026 36.0 36.0 36.0 36.0 36.0 11 35.27338675340225 36.0 36.0 36.0 36.0 36.0 12 35.1840219997631 36.0 36.0 36.0 36.0 36.0 13 35.225911828074025 36.0 36.0 36.0 36.0 36.0 14 35.188056356785445 36.0 36.0 36.0 36.0 36.0 15 35.14572730153954 36.0 36.0 36.0 36.0 36.0 16 35.16240768070891 36.0 36.0 36.0 36.0 36.0 17 35.144681096274574 36.0 36.0 36.0 36.0 36.0 18 35.14371236398211 36.0 36.0 36.0 36.0 36.0 19 35.14056606491723 36.0 36.0 36.0 36.0 36.0 20 35.13540546856742 36.0 36.0 36.0 36.0 36.0 21 35.129212112675155 36.0 36.0 36.0 36.0 36.0 22 35.108477528035934 36.0 36.0 36.0 36.0 36.0 23 35.07871830250955 36.0 36.0 36.0 36.0 36.0 24 35.063597627150116 36.0 36.0 36.0 36.0 36.0 25 35.045879366258276 36.0 36.0 36.0 36.0 36.0 26 35.003553512374864 36.0 36.0 36.0 36.0 36.0 27 34.99388283653523 36.0 36.0 36.0 36.0 36.0 28 34.96390911972135 36.0 36.0 36.0 36.0 36.0 29 34.95000240102188 36.0 36.0 36.0 36.0 36.0 30 34.92887725015767 36.0 36.0 36.0 32.0 36.0 31 34.92639683449276 36.0 36.0 36.0 32.0 36.0 32 34.897017290558864 36.0 36.0 36.0 32.0 36.0 33 34.87495990293469 36.0 36.0 36.0 32.0 36.0 34 34.865996087935024 36.0 36.0 36.0 32.0 36.0 35 34.85351653663799 36.0 36.0 36.0 32.0 36.0 36 34.82209196233917 36.0 36.0 36.0 32.0 36.0 37 34.824641527434075 36.0 36.0 36.0 32.0 36.0 38 34.81008237105712 36.0 36.0 36.0 32.0 36.0 39 34.78416029862309 36.0 36.0 36.0 32.0 36.0 40 34.771596231356064 36.0 36.0 36.0 32.0 36.0 41 34.74778193599196 36.0 36.0 36.0 32.0 36.0 42 34.71679274699312 36.0 36.0 36.0 32.0 36.0 43 34.71033111692336 36.0 36.0 36.0 32.0 36.0 44 34.666805392375 36.0 36.0 36.0 32.0 36.0 45 34.63891192091354 36.0 36.0 36.0 32.0 36.0 46 34.629732974353885 36.0 36.0 36.0 32.0 36.0 47 34.60207896480742 36.0 36.0 36.0 32.0 36.0 48 34.574277692585966 36.0 36.0 36.0 32.0 36.0 49 34.562861633911396 36.0 36.0 36.0 32.0 36.0 50 34.11254453895578 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 14.0 21 42.0 22 90.0 23 237.0 24 701.0 25 1707.0 26 3636.0 27 6572.0 28 11776.0 29 19251.0 30 29704.0 31 45046.0 32 71584.0 33 126415.0 34 291159.0 35 953896.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.49412236396638 18.10436150439814 12.372049173083155 26.029466958552323 2 16.895625944036823 19.06853539269691 36.6607396574543 27.375099005811972 3 19.44626566749817 22.389860112995507 27.620768430919583 30.54310578858674 4 13.592344901990286 15.274212704927217 34.005192609974806 37.12824978310769 5 15.501189306168705 35.6667637746625 32.426088543284024 16.405958375884776 6 35.72716894465534 33.81806354208618 15.83173851716351 14.623028996094966 7 31.639769886063508 29.23817176590357 19.228087474028946 19.893970874003976 8 28.848694004168173 32.48595402203178 18.17010119506862 20.495250778731428 9 27.061437347735197 14.512352457205788 18.270303841314863 40.15590635374415 10 17.54873920579217 25.998170098851798 29.44040752116263 27.0126831741934 11 37.800023690082504 21.171250484206077 20.95304561621426 20.07568020949716 12 24.878492286317055 23.069146228634906 27.59785764821508 24.454503836832956 13 30.226752505866493 19.191591941530316 24.378439463835807 26.203216088767377 14 23.98243092260066 18.904813888791068 24.298021237838825 32.81473395076945 15 26.301497917513693 26.046413353523263 21.30295453745114 26.349134191511908 16 26.47008919681885 25.490467254055666 22.55826029387378 25.4811832552517 17 24.752358603821786 25.458387089545308 24.22157270134169 25.56768160529121 18 25.26252840416153 24.869656191995166 24.95564500896704 24.91217039487627 19 26.43755582375859 24.39867207483505 24.467565395832466 24.696206705573893 20 26.700669600839017 23.75501496325455 24.237142933976 25.30717250193043 21 26.931846193740057 23.47975298286951 24.28451148808933 25.303889335301104 22 26.693216632999007 23.525532466617793 24.33470885208745 25.446542048295758 23 25.489648707865243 23.78748317682929 24.739889130342917 25.98297898496255 24 25.687613449736364 24.23520071199214 24.52300688621892 25.55417895205258 25 25.691559655583955 23.753835239641653 24.52562119357268 26.02898391120172 26 25.333023439856017 24.401678290873445 24.784755289798422 25.48054297947212 27 25.910903178260874 24.08804036805566 24.332113182685173 25.668943270998295 28 25.802742087190257 23.90493551363392 24.608417322799355 25.68390507637647 29 25.523185346392395 24.26600385317964 24.71093149241241 25.49987930801555 30 25.621569291586127 24.306046882693384 24.6648606459288 25.407523179791692 31 25.866133615396336 23.85041611549558 24.216718123529766 26.066732145578314 32 25.717992010608132 24.10128945634615 24.082977498701837 26.097741034343887 33 25.655848808225727 23.752121708430682 24.522115388924924 26.069914094418667 34 26.044021690065634 23.93123155598497 24.565939374614633 25.458807379334765 35 26.000619784970468 23.73251412443848 24.73774388026369 25.52912221032736 36 25.593967073219925 24.030991869148288 24.423928611903094 25.95111244572869 37 26.171337760692122 23.933348870921062 24.20924776732548 25.686065601061337 38 25.786526745783007 23.874801115354696 24.50694215458099 25.83172998428131 39 26.298886106520662 23.68347420539768 24.19550536906005 25.8221343190216 40 26.126929063478617 24.045720637225617 24.2554741768166 25.571876122479164 41 25.507806297284702 24.439818775066975 24.62261879760484 25.42975613004349 42 26.215925309572004 24.436514608904226 24.043302622117583 25.304257459406195 43 26.05655897674943 23.762364192376843 24.28081507624692 25.900261754626808 44 25.697987419450673 24.04262839229185 24.348754238764073 25.910629949493398 45 25.90957490743059 24.06727873781615 24.242397078757154 25.78074927599611 46 25.92158381861896 23.96031489408021 24.129735336583867 25.98836595071696 47 25.60379915982582 24.238276010216293 24.499637922192008 25.65828690776588 48 26.003255289204656 24.425618178395485 23.860744823488282 25.710381708911576 49 25.920606696636955 24.252498288799433 24.05695080386408 25.769944210699535 50 25.804311816934423 24.493709505884553 24.113891590541943 25.588087086639078 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 40.0 1 38.5 2 37.0 3 114.5 4 192.0 5 199.0 6 206.0 7 175.0 8 144.0 9 203.0 10 262.0 11 460.0 12 658.0 13 1227.0 14 1796.0 15 2227.0 16 2658.0 17 2517.5 18 2377.0 19 2238.5 20 2100.0 21 2400.0 22 2700.0 23 3258.5 24 3817.0 25 4856.5 26 5896.0 27 7190.0 28 8484.0 29 10368.5 30 12253.0 31 14474.5 32 16696.0 33 19563.5 34 22431.0 35 26647.0 36 30863.0 37 37355.0 38 43847.0 39 49737.5 40 55628.0 41 63112.0 42 70596.0 43 74994.0 44 79392.0 45 87398.0 46 95404.0 47 102599.5 48 109795.0 49 117605.5 50 125416.0 51 127370.0 52 129324.0 53 130358.5 54 131393.0 55 130301.5 56 129210.0 57 124470.5 58 119731.0 59 110704.5 60 101678.0 61 91107.0 62 80536.0 63 69669.5 64 58803.0 65 49765.5 66 40728.0 67 34306.0 68 27884.0 69 23576.0 70 19268.0 71 15113.5 72 10959.0 73 9337.0 74 7715.0 75 5987.0 76 4259.0 77 3555.5 78 2852.0 79 2262.5 80 1673.0 81 1344.0 82 1015.0 83 807.5 84 600.0 85 442.5 86 285.0 87 206.5 88 128.0 89 87.5 90 47.0 91 31.5 92 16.0 93 14.5 94 13.0 95 16.0 96 19.0 97 14.0 98 9.0 99 5.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0315654342488163 2 0.0037135804998607407 3 1.9208174999279693E-4 4 0.0 5 0.0 6 2.5610899999039594E-4 7 0.0 8 0.0 9 0.0 10 1.2805449999519797E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 5.122179999807919E-4 17 0.0 18 2.5610899999039594E-4 19 0.0 20 5.762452499783908E-4 21 0.0 22 0.0 23 6.402724999759899E-5 24 0.0012805449999519797 25 1.9208174999279693E-4 26 5.122179999807919E-4 27 3.8416349998559386E-4 28 0.0020488719999231676 29 5.122179999807919E-4 30 0.0014085994999471776 31 5.762452499783908E-4 32 8.963814999663857E-4 33 2.5610899999039594E-4 34 8.963814999663857E-4 35 1.9208174999279693E-4 36 3.8416349998559386E-4 37 0.001984844749925568 38 0.0 39 0.0010244359999615838 40 1.2805449999519797E-4 41 0.0012165177499543806 42 0.005250234499803116 43 0.0042898257498391315 44 0.0037776077498583396 45 0.0021769264999183654 46 0.0025610899999039594 47 0.0010244359999615838 48 0.004417880249834329 49 0.004225798499841532 50 0.0021769264999183654 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1561835.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.86027861596643 #Duplication Level Percentage of deduplicated Percentage of total 1 71.35822973211185 37.72015905181572 2 15.655231740315854 16.55079823181234 3 5.68224520366395 9.010951938897458 4 2.5794088058608575 5.453930725691287 5 1.3483215841615848 3.5636327301351303 6 0.8150879236575602 2.5851464844628924 7 0.5178613256560873 1.9162005771030153 8 0.35733093477064665 1.5110890216064086 9 0.26735874421204536 1.2719391938517257 >10 1.2923135829159624 12.051572942473712 >50 0.07915139418423396 2.9055827230663667 >100 0.04465306991835072 4.375007707435308 >500 0.0026839603722395833 1.0126642935866956 >1k 1.2199819873816287E-4 0.07132437806195538 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2805449999519795E-4 2 0.0 0.0 0.0 0.0 1.9208174999279693E-4 3 0.0 0.0 0.0 0.0 1.9208174999279693E-4 4 0.0 0.0 0.0 0.0 1.9208174999279693E-4 5 0.0 0.0 0.0 0.0 1.9208174999279693E-4 6 0.0 0.0 0.0 0.0 2.561089999903959E-4 7 0.0 0.0 0.0 0.0 2.561089999903959E-4 8 0.0 0.0 0.0 0.0 2.561089999903959E-4 9 0.0 0.0 0.0 0.0 2.561089999903959E-4 10 0.0 0.0 0.0 0.0 3.8416349998559386E-4 11 0.0 0.0 0.0 0.0 3.8416349998559386E-4 12 0.0 0.0 0.0 0.0 5.122179999807918E-4 13 0.0 0.0 0.0 0.0 6.402724999759898E-4 14 0.0 0.0 0.0 0.0 6.402724999759898E-4 15 0.0 0.0 0.0 6.402724999759897E-5 0.0010244359999615836 16 0.0 0.0 0.0 1.2805449999519795E-4 0.0010244359999615836 17 0.0 0.0 0.0 1.2805449999519795E-4 0.0010244359999615836 18 0.0 0.0 0.0 1.2805449999519795E-4 0.0012165177499543806 19 0.0 0.0 0.0 1.2805449999519795E-4 0.0012805449999519795 20 0.0 0.0 0.0 3.201362499879949E-4 0.0014726267499447765 21 0.0 0.0 0.0 3.8416349998559386E-4 0.0015366539999423754 22 0.0 0.0 0.0 3.8416349998559386E-4 0.0015366539999423754 23 0.0 0.0 0.0 6.402724999759898E-4 0.0015366539999423754 24 0.0 0.0 0.0 0.0012165177499543806 0.0017287357499351725 25 0.0 0.0 0.0 0.0014085994999471776 0.0017287357499351725 26 0.0 0.0 0.0 0.001984844749925568 0.0017287357499351725 27 0.0 0.0 0.0 0.002369008249911162 0.0017927629999327714 28 0.0 0.0 0.0 0.002881226249891954 0.0017927629999327714 29 0.0 0.0 0.0 0.0037776077498583396 0.0017927629999327714 30 0.0 0.0 0.0 0.006210643249767101 0.0017927629999327714 31 0.0 0.0 0.0 0.010948659749589425 0.0017927629999327714 32 0.0 0.0 0.0 0.017287357499351723 0.0017927629999327714 33 0.0 0.0 0.0 0.024586463999078007 0.0017927629999327714 34 0.0 0.0 0.0 0.0313733524988235 0.0019208174999279693 35 0.0 0.0 0.0 0.03931273149852577 0.0019208174999279693 36 0.0 0.0 0.0 0.0497491732481344 0.0019208174999279693 37 0.0 0.0 0.0 0.06793291224745251 0.0019208174999279693 38 0.0 0.0 0.0 0.08861371399667699 0.0019208174999279693 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 980 0.0 28.746029 1 GTATCAA 2075 0.0 25.667955 1 CCTTATA 120 3.1620402E-7 18.334106 2 TAGGACG 120 3.1641684E-7 18.332932 4 ATCAACG 3190 0.0 16.206543 3 TCAACGC 3270 0.0 15.87733 4 TACACCG 195 8.931238E-10 15.794527 5 GTGTAAG 285 0.0 15.444687 1 CTATTAG 115 8.192359E-5 15.310388 1 TATCAAC 3540 0.0 15.288782 2 GTGTAGG 260 1.8189894E-12 15.236777 1 CTAGTAC 160 3.826426E-7 15.12467 3 CAACGCA 3440 0.0 15.092693 5 TATGGGT 175 6.4141204E-8 15.085385 4 AACGCAG 3505 0.0 14.938333 6 ATACCGT 340 0.0 14.882029 6 TACTAGA 180 9.051473E-8 14.667287 2 CGCAATA 195 1.5157639E-8 14.667285 36 TACACTA 180 9.058567E-8 14.6663475 5 CTATTCC 330 0.0 14.666347 4 >>END_MODULE