FastQCFastQC Report
Thu 2 Feb 2017
SRR4062212_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062212_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2302752
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA10950.031.7537881
GTATCAA25750.025.1259611
ATACCGT3000.021.2661026
TACCGTA951.5985002E-518.5258227
ATTATAC2400.017.4162043
CGTCGTA2550.017.25444210
TACCGTC3100.017.0318037
TATCAAC37850.016.973282
TCTAGCG1854.2382453E-1016.64820528
TCAACGC38450.016.4208894
ATCAACG38850.016.3084473
GTATAAA3600.015.8936421
CAACGCA39750.015.8838545
AACGCAG41000.015.5605616
CGCAATA2051.8117134E-915.02464236
ACCGTCG2950.014.9148588
GTATATA4000.014.3042771
TATACTG4800.014.2079555
CTTACAC3900.014.1021893
TACGCTA1901.7554885E-713.8943669
Produced by FastQC (version 0.11.5)