FastQCFastQC Report
Thu 2 Feb 2017
SRR4062200_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062200_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1182552
Sequences flagged as poor quality0
Sequence length50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA5450.029.0710641
GTATCAA14600.028.0339971
AGCGCTA450.001398689124.44296514
TACGAAT2100.022.0033241
ATACGAA2100.022.00239240
TACACCG956.867249E-720.8417245
CGCAATA2300.020.08913836
TCAACGC20150.020.0889634
ACTATAC901.00245325E-519.5543733
CAACGCA20600.019.5433315
ATCAACG20850.019.4136943
TATCAAC21200.019.3007162
TAAACGC1504.656613E-1019.0663228
AACGCAG21300.019.0043496
GTCTAGG1759.094947E-1218.8615841
AGCTACG708.1241777E-418.8567987
AATACGA2500.018.48200639
AACGTCG600.007410981718.33377322
TGTACGC600.007414597618.3322242
CAATACG2550.018.11961638
Produced by FastQC (version 0.11.5)