##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062200_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1182552 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.300661619954134 32.0 32.0 32.0 32.0 32.0 2 31.49231154317104 32.0 32.0 32.0 32.0 32.0 3 31.59872039453656 32.0 32.0 32.0 32.0 32.0 4 31.669864834696487 32.0 32.0 32.0 32.0 32.0 5 31.647003260744558 32.0 32.0 32.0 32.0 32.0 6 35.30878642123137 36.0 36.0 36.0 36.0 36.0 7 35.31129540180897 36.0 36.0 36.0 36.0 36.0 8 35.266690175146636 36.0 36.0 36.0 36.0 36.0 9 35.345779297654566 36.0 36.0 36.0 36.0 36.0 10 35.235440809368214 36.0 36.0 36.0 36.0 36.0 11 35.343179834797965 36.0 36.0 36.0 36.0 36.0 12 35.2729529018597 36.0 36.0 36.0 36.0 36.0 13 35.30604235585412 36.0 36.0 36.0 36.0 36.0 14 35.26820131376886 36.0 36.0 36.0 36.0 36.0 15 35.248457573113065 36.0 36.0 36.0 36.0 36.0 16 35.258511253627745 36.0 36.0 36.0 36.0 36.0 17 35.24740814780238 36.0 36.0 36.0 36.0 36.0 18 35.24163673140801 36.0 36.0 36.0 36.0 36.0 19 35.23628221000007 36.0 36.0 36.0 36.0 36.0 20 35.232414303979866 36.0 36.0 36.0 36.0 36.0 21 35.22863011520847 36.0 36.0 36.0 36.0 36.0 22 35.2127356767398 36.0 36.0 36.0 36.0 36.0 23 35.18455678904606 36.0 36.0 36.0 36.0 36.0 24 35.16039717492339 36.0 36.0 36.0 36.0 36.0 25 35.15173286248723 36.0 36.0 36.0 36.0 36.0 26 35.10707605246957 36.0 36.0 36.0 36.0 36.0 27 35.10012160141795 36.0 36.0 36.0 36.0 36.0 28 35.07920412802143 36.0 36.0 36.0 36.0 36.0 29 35.06686302166839 36.0 36.0 36.0 36.0 36.0 30 35.04565803448813 36.0 36.0 36.0 36.0 36.0 31 35.047137884845654 36.0 36.0 36.0 36.0 36.0 32 35.02985238704091 36.0 36.0 36.0 36.0 36.0 33 35.005250509068524 36.0 36.0 36.0 36.0 36.0 34 34.99722041821417 36.0 36.0 36.0 36.0 36.0 35 34.995004870821745 36.0 36.0 36.0 36.0 36.0 36 34.964129272962204 36.0 36.0 36.0 36.0 36.0 37 34.95401555280444 36.0 36.0 36.0 36.0 36.0 38 34.93804162523086 36.0 36.0 36.0 36.0 36.0 39 34.930643219071975 36.0 36.0 36.0 36.0 36.0 40 34.910948524885164 36.0 36.0 36.0 36.0 36.0 41 34.89457123238555 36.0 36.0 36.0 36.0 36.0 42 34.871539687049705 36.0 36.0 36.0 36.0 36.0 43 34.862651282987976 36.0 36.0 36.0 32.0 36.0 44 34.8207165519994 36.0 36.0 36.0 32.0 36.0 45 34.81794035272868 36.0 36.0 36.0 32.0 36.0 46 34.79925703055764 36.0 36.0 36.0 32.0 36.0 47 34.777415284909246 36.0 36.0 36.0 32.0 36.0 48 34.75725042112313 36.0 36.0 36.0 32.0 36.0 49 34.74061774873325 36.0 36.0 36.0 32.0 36.0 50 34.341122419986604 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 4.0 21 30.0 22 82.0 23 204.0 24 514.0 25 1262.0 26 2613.0 27 4936.0 28 8507.0 29 13526.0 30 20132.0 31 29835.0 32 45229.0 33 76899.0 34 180953.0 35 797824.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.67464730830981 17.04567947392729 11.746210858793058 26.533462358969846 2 16.75229027290463 19.122774526194906 36.378320187467075 27.74661501343339 3 19.27010089239582 22.327738347820425 27.682113269070914 30.720047490712844 4 13.07426650159993 15.116037180606012 34.02345097720861 37.786245340585445 5 15.355688375648596 35.779060878506826 32.666216792157975 16.1990339536866 6 36.54568517187434 33.70039321804575 15.715783687793328 14.038137922286584 7 31.869380796785258 29.365558554718945 19.339530101001902 19.425530547493892 8 28.947225999364086 32.67061406179179 18.289005472909437 20.09315446593469 9 27.08633531548718 14.457884304453419 18.00402857548759 40.451751804571806 10 16.61122151283244 26.48708299860471 30.3057798824574 26.595915606105454 11 37.87241491283259 21.093617870503792 21.36117481514555 19.672792401518073 12 25.0723858232027 22.94681333252153 27.88308674798233 24.09771409629344 13 29.767739600457315 19.17657743591825 24.678661065221657 26.377021898402774 14 23.973998606403775 18.69778242309852 24.427847570339402 32.9003714001583 15 25.477526569656135 26.8043181187804 21.498335802569358 26.219819508994107 16 26.499389453958738 25.57934223388818 22.669692900415036 25.25157541173804 17 24.692613940021243 25.690117643875283 24.416769833377305 25.200498582726173 18 25.43050960972541 24.939537542535128 25.021901785291472 24.608051062447995 19 25.93729493502189 24.65109356713278 24.70868088676016 24.70293061108518 20 26.28554709268353 24.034565951066806 24.410617385634954 25.26926957061471 21 26.694048126424885 23.92774271237121 24.315970883309994 25.06223827789391 22 26.32915930969632 23.693588104370885 24.629783721984317 25.34746886394848 23 25.22180842787463 23.935860748618243 24.960509136173293 25.881821687333833 24 25.276311539040474 24.377146858208842 24.80977419829486 25.536767404455823 25 25.49980973320367 23.974884782884445 24.87911716206503 25.646188321846857 26 25.214600712869277 24.69766478231272 24.979599085024248 25.108135419793747 27 25.617204868466338 24.316286259596854 24.65115610431365 25.415352767623162 28 25.43582145844062 24.116201015274786 24.96285528486635 25.48512224141824 29 25.148239225807323 24.577776124098133 25.052936540419502 25.221048109675042 30 25.332759425505863 24.53675828896541 24.987315396740563 25.143166888788166 31 25.58724988287982 24.30899093988733 24.45029622526312 25.653462951969736 32 25.68564044974225 24.270809373689268 24.284508652532168 25.759041524036313 33 25.135512698871754 24.328525063718452 24.716247824608935 25.819714412800852 34 25.748135369628088 24.222690141559696 24.77066314881526 25.258511339996954 35 25.862628831979762 24.19487411927465 24.97945115124291 24.96304589750268 36 25.13699232504727 24.635279075352543 24.62276372713835 25.60496487246184 37 26.00505019754289 24.22936285652433 24.680345835362882 25.0852411105699 38 25.285315148932142 24.13424525940508 24.86148600653502 25.718953585127757 39 25.945168873780165 24.26700153905999 24.247467316116158 25.540362271043687 40 25.846073446303798 24.29003062024386 24.682910081679353 25.18098585177299 41 25.05885636003856 24.725928932636528 24.939959747661813 25.275254959663094 42 26.02639866585933 24.492170718589005 24.598472368336484 24.882958247215186 43 25.66883494685853 23.923217173049732 24.693024294209575 25.71492358588216 44 25.236573052236345 24.483091052084127 24.635140506211364 25.645195389468167 45 25.292404955176274 24.551276467817484 24.753133348160414 25.40318522884583 46 25.33739244413437 24.448700873131646 24.567007040020293 25.646899642713684 47 25.454425527488784 24.442279607318838 24.910510199680854 25.192784665511525 48 25.835809712593427 24.921142049173532 24.060850431202883 25.182197807030153 49 25.3641652128247 24.71942893820629 24.361542800459027 25.55486304850998 50 25.327603236456138 24.93412418141473 24.478574714509932 25.259697867619202 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 27.0 1 32.0 2 37.0 3 101.5 4 166.0 5 181.5 6 197.0 7 152.0 8 107.0 9 152.5 10 198.0 11 342.5 12 487.0 13 895.5 14 1304.0 15 1619.5 16 1935.0 17 1832.0 18 1729.0 19 1670.5 20 1612.0 21 1875.5 22 2139.0 23 2757.0 24 3375.0 25 4241.5 26 5108.0 27 6444.0 28 7780.0 29 9136.0 30 10492.0 31 12553.5 32 14615.0 33 17128.5 34 19642.0 35 23323.5 36 27005.0 37 31530.5 38 36056.0 39 41173.5 40 46291.0 41 50968.0 42 55645.0 43 59499.0 44 63353.0 45 68954.5 46 74556.0 47 79447.5 48 84339.0 49 89050.5 50 93762.0 51 93767.5 52 93773.0 53 94057.0 54 94341.0 55 93778.5 56 93216.0 57 89602.0 58 85988.0 59 79935.5 60 73883.0 61 65485.0 62 57087.0 63 50024.5 64 42962.0 65 36440.0 66 29918.0 67 25868.5 68 21819.0 69 18681.5 70 15544.0 71 11881.0 72 8218.0 73 7006.0 74 5794.0 75 4432.0 76 3070.0 77 2575.0 78 2080.0 79 1695.0 80 1310.0 81 1027.0 82 744.0 83 599.5 84 455.0 85 345.5 86 236.0 87 166.0 88 96.0 89 56.5 90 17.0 91 12.5 92 8.0 93 11.0 94 14.0 95 12.5 96 11.0 97 10.0 98 9.0 99 5.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.030273510171222914 2 0.0043127067562356665 3 4.228143878662418E-4 4 0.0 5 0.0 6 1.6912575514649674E-4 7 0.0 8 0.0 9 0.0 10 1.6912575514649674E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 3.382515102929935E-4 17 0.0 18 0.0 19 0.0 20 8.456287757324837E-5 21 0.0 22 0.0 23 0.0 24 8.456287757324836E-4 25 1.6912575514649674E-4 26 5.919401430127385E-4 27 2.536886327197451E-4 28 0.0012684431635987255 29 3.382515102929935E-4 30 0.001353006041171974 31 5.073772654394902E-4 32 6.76503020585987E-4 33 5.073772654394902E-4 34 0.0010147545308789804 35 3.382515102929935E-4 36 3.382515102929935E-4 37 0.002029509061757961 38 0.0 39 0.0010147545308789804 40 8.456287757324837E-5 41 0.0010147545308789804 42 0.005750275674980889 43 0.004059018123515922 44 0.003551640858076431 45 0.002621449204770699 46 0.0022831976944777056 47 0.0012684431635987255 48 0.003889892368369425 49 0.004481832511382163 50 0.002029509061757961 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1182552.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.83030137845667 #Duplication Level Percentage of deduplicated Percentage of total 1 75.44548986273544 42.12144436681818 2 13.804137311994257 15.413782927964764 3 4.611787381598187 7.724324382239711 4 1.9949621221313978 4.455173460688057 5 1.110551094658192 3.1001201155470914 6 0.6888411536642696 2.307492552657597 7 0.44735077814567853 1.7483010136032238 8 0.3122772254417504 1.3947625288032943 9 0.23776163861811778 1.1946873546256696 >10 1.2338995215892214 11.979700946407975 >50 0.06633126832744787 2.5287793058990653 >100 0.043259554316905334 4.655963318644096 >500 0.0030464425265586993 1.190671672631629 >1k 3.0464425265586993E-4 0.18479605346964717 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.536886327197451E-4 2 0.0 0.0 0.0 0.0 2.536886327197451E-4 3 0.0 0.0 0.0 0.0 2.536886327197451E-4 4 0.0 0.0 0.0 0.0 2.536886327197451E-4 5 0.0 0.0 0.0 0.0 2.536886327197451E-4 6 0.0 0.0 0.0 0.0 2.536886327197451E-4 7 0.0 0.0 0.0 0.0 2.536886327197451E-4 8 0.0 0.0 0.0 0.0 2.536886327197451E-4 9 0.0 0.0 0.0 0.0 2.536886327197451E-4 10 0.0 0.0 0.0 0.0 2.536886327197451E-4 11 0.0 0.0 0.0 0.0 2.536886327197451E-4 12 0.0 0.0 0.0 0.0 3.3825151029299343E-4 13 0.0 0.0 0.0 0.0 4.228143878662418E-4 14 0.0 0.0 0.0 0.0 4.228143878662418E-4 15 0.0 0.0 0.0 1.6912575514649672E-4 4.228143878662418E-4 16 0.0 0.0 0.0 1.6912575514649672E-4 4.228143878662418E-4 17 0.0 0.0 0.0 1.6912575514649672E-4 4.228143878662418E-4 18 0.0 0.0 0.0 2.536886327197451E-4 4.228143878662418E-4 19 0.0 0.0 0.0 3.3825151029299343E-4 4.228143878662418E-4 20 0.0 0.0 0.0 4.228143878662418E-4 4.228143878662418E-4 21 0.0 0.0 0.0 7.610658981592353E-4 4.228143878662418E-4 22 0.0 0.0 0.0 0.0010147545308789804 4.228143878662418E-4 23 0.0 0.0 0.0 0.0014375689187452222 4.228143878662418E-4 24 0.0 0.0 0.0 0.002029509061757961 4.228143878662418E-4 25 0.0 0.0 0.0 0.0027060120823439475 4.228143878662418E-4 26 0.0 0.0 0.0 0.004059018123515922 5.073772654394902E-4 27 0.0 0.0 0.0 0.004228143878662418 5.073772654394902E-4 28 0.0 0.0 0.0 0.006342215817993628 5.073772654394902E-4 29 0.0 0.0 0.0 0.008033473369458595 5.073772654394902E-4 30 0.0 0.0 0.0 0.011077736962095536 5.073772654394902E-4 31 0.0 0.0 0.0 0.015644132351050947 5.073772654394902E-4 32 0.0 0.0 0.0 0.021478970903605083 5.073772654394902E-4 33 0.0 0.0 0.0 0.028244001109464952 5.073772654394902E-4 34 0.0 0.0 0.0 0.0363620373564968 5.919401430127386E-4 35 0.0 0.0 0.0 0.044310947848382146 5.919401430127386E-4 36 0.0 0.0 0.0 0.05454305603474519 5.919401430127386E-4 37 0.0 0.0 0.0 0.07137106867182162 5.919401430127386E-4 38 0.0 0.0 0.0 0.09251178806513372 5.919401430127386E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 545 0.0 29.071064 1 GTATCAA 1460 0.0 28.033997 1 AGCGCTA 45 0.0013986891 24.442965 14 TACGAAT 210 0.0 22.00332 41 ATACGAA 210 0.0 22.002392 40 TACACCG 95 6.867249E-7 20.841724 5 CGCAATA 230 0.0 20.089138 36 TCAACGC 2015 0.0 20.088963 4 ACTATAC 90 1.00245325E-5 19.554373 3 CAACGCA 2060 0.0 19.543331 5 ATCAACG 2085 0.0 19.413694 3 TATCAAC 2120 0.0 19.300716 2 TAAACGC 150 4.656613E-10 19.06632 28 AACGCAG 2130 0.0 19.004349 6 GTCTAGG 175 9.094947E-12 18.861584 1 AGCTACG 70 8.1241777E-4 18.856798 7 AATACGA 250 0.0 18.482006 39 AACGTCG 60 0.0074109817 18.333773 22 TGTACGC 60 0.0074145976 18.332224 2 CAATACG 255 0.0 18.119616 38 >>END_MODULE