FastQCFastQC Report
Thu 2 Feb 2017
SRR4062197_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062197_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3619
Sequences flagged as poor quality0
Sequence length25
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGTGGTGCCCTTCCGTCAAT70.19342359767891684No Hit
TATCAACGCAGAGTACTTTTTTTTT70.19342359767891684No Hit
GGGGGGGGGGGGGGGGGGGGGGGGG60.16579165515335728No Hit
GGCGGTGACTCGCCTCGCGGCGGAC60.16579165515335728No Hit
TTCGTATTGCGCCGCTAGAGGTGAA50.13815971262779772No Hit
GGCCCGAGCCGCCTGGATACCGCAG40.11052777010223819No Hit
CCCTTCACCTGACCAATGACTTCCA40.11052777010223819No Hit
CTCCCGACCCGGGGAGGTAGTGACG40.11052777010223819No Hit
GTATCAACGCAGAGTACTTTTTTTT40.11052777010223819No Hit
GAATAGGACCGCGGTTCTATTTTGT40.11052777010223819No Hit
GAATAACGCCGCCGCATCGCCAGTC40.11052777010223819No Hit
TGTCAATCCTGTCCGTGTCCGGGCC40.11052777010223819No Hit
TCCCGGCTCCGGCCGGGGGTCGGGC40.11052777010223819No Hit
GGCTCCACTCCTGGTGGTGCCCTTC40.11052777010223819No Hit
CTCCACTCCTGGTGGTGCCCTTCCG40.11052777010223819No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)