FastQCFastQC Report
Thu 2 Feb 2017
SRR4062197_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062197_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3619
Sequences flagged as poor quality0
Sequence length50
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATAT90.24868748273003594No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT80.22105554020447638No Hit
TATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATG70.19342359767891684No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.16579165515335728No Hit
TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT60.16579165515335728No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC50.13815971262779772No Hit
ATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAA50.13815971262779772No Hit
GAGTACGAGCAAATGGTGAAGGAGCTGCGGGAGATCCGCCTGCAGCCGCA50.13815971262779772No Hit
GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG40.11052777010223819No Hit
GTGAAGGAGCTGCGGGAGATCCGCCTGCAGCCGCAGGAGGCGCCGCTGGC40.11052777010223819No Hit
CTTTTGTGCCGTCTGGTGCGCTCCCGACGATCCTTGAAAATCCACCGGAA40.11052777010223819No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG40.11052777010223819No Hit
GGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTT40.11052777010223819No Hit
TTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC40.11052777010223819No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)