Basic Statistics
Measure | Value |
---|---|
Filename | SRR4062180_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1242265 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1474 | 0.11865423239002951 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 2055 | 0.0 | 22.599083 | 1 |
TTAGGAC | 340 | 0.0 | 21.998491 | 3 |
GGTATCA | 1050 | 0.0 | 21.590769 | 1 |
TAGGACG | 390 | 0.0 | 21.434427 | 4 |
GTCCTAC | 525 | 0.0 | 19.284958 | 1 |
GTGTACG | 75 | 0.0012869678 | 17.608006 | 1 |
GACGTGA | 275 | 0.0 | 17.598793 | 7 |
TCCTACA | 655 | 0.0 | 17.465857 | 2 |
ATACCGT | 290 | 0.0 | 17.447079 | 6 |
GTAGGAC | 515 | 0.0 | 17.086206 | 3 |
ACCGTCG | 285 | 0.0 | 16.98129 | 8 |
AACGCAG | 2805 | 0.0 | 16.783161 | 6 |
AATCACG | 250 | 0.0 | 16.720198 | 34 |
AGGACGT | 500 | 0.0 | 16.718853 | 5 |
GGTCTAA | 120 | 6.3791776E-6 | 16.507505 | 1 |
TACCGTC | 295 | 0.0 | 16.405653 | 7 |
GTATAGC | 230 | 1.8189894E-12 | 16.268267 | 1 |
TATGGCG | 545 | 0.0 | 16.145681 | 16 |
CGCAATA | 150 | 1.8382889E-7 | 16.132875 | 36 |
ATCAACG | 2940 | 0.0 | 16.087332 | 3 |