##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062176_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1376563 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.300584862443635 32.0 32.0 32.0 32.0 32.0 2 31.475898306143634 32.0 32.0 32.0 32.0 32.0 3 31.575374319954843 32.0 32.0 32.0 32.0 32.0 4 31.65462169185137 32.0 32.0 32.0 32.0 32.0 5 31.634172936509263 32.0 32.0 32.0 32.0 32.0 6 35.27269220515153 36.0 36.0 36.0 36.0 36.0 7 35.274984871742156 36.0 36.0 36.0 36.0 36.0 8 35.227707703897316 36.0 36.0 36.0 36.0 36.0 9 35.304262136930895 36.0 36.0 36.0 36.0 36.0 10 35.19763933797436 36.0 36.0 36.0 36.0 36.0 11 35.304001342473974 36.0 36.0 36.0 36.0 36.0 12 35.2350382801223 36.0 36.0 36.0 36.0 36.0 13 35.26279945051552 36.0 36.0 36.0 36.0 36.0 14 35.231053718572994 36.0 36.0 36.0 36.0 36.0 15 35.20922035533427 36.0 36.0 36.0 36.0 36.0 16 35.227977215717694 36.0 36.0 36.0 36.0 36.0 17 35.20873073008645 36.0 36.0 36.0 36.0 36.0 18 35.20161954084194 36.0 36.0 36.0 36.0 36.0 19 35.189014233275195 36.0 36.0 36.0 36.0 36.0 20 35.19145800083251 36.0 36.0 36.0 36.0 36.0 21 35.18172579097361 36.0 36.0 36.0 36.0 36.0 22 35.16446177908312 36.0 36.0 36.0 36.0 36.0 23 35.12985239324317 36.0 36.0 36.0 36.0 36.0 24 35.120640319404195 36.0 36.0 36.0 36.0 36.0 25 35.1071276795904 36.0 36.0 36.0 36.0 36.0 26 35.06576378996094 36.0 36.0 36.0 36.0 36.0 27 35.04680134508918 36.0 36.0 36.0 36.0 36.0 28 35.0252331349891 36.0 36.0 36.0 36.0 36.0 29 35.01314360476055 36.0 36.0 36.0 36.0 36.0 30 34.99300649516223 36.0 36.0 36.0 36.0 36.0 31 34.98300767927076 36.0 36.0 36.0 36.0 36.0 32 34.95362289993266 36.0 36.0 36.0 36.0 36.0 33 34.945804877800725 36.0 36.0 36.0 36.0 36.0 34 34.93006567806922 36.0 36.0 36.0 36.0 36.0 35 34.915894877314 36.0 36.0 36.0 36.0 36.0 36 34.892458972092086 36.0 36.0 36.0 32.0 36.0 37 34.87812835300673 36.0 36.0 36.0 32.0 36.0 38 34.86350788158624 36.0 36.0 36.0 32.0 36.0 39 34.829666350177945 36.0 36.0 36.0 32.0 36.0 40 34.827526237447906 36.0 36.0 36.0 32.0 36.0 41 34.79910763256022 36.0 36.0 36.0 32.0 36.0 42 34.78261873957094 36.0 36.0 36.0 32.0 36.0 43 34.76575935863451 36.0 36.0 36.0 32.0 36.0 44 34.72589558196755 36.0 36.0 36.0 32.0 36.0 45 34.70543084479243 36.0 36.0 36.0 32.0 36.0 46 34.66773115360503 36.0 36.0 36.0 32.0 36.0 47 34.64771172841345 36.0 36.0 36.0 32.0 36.0 48 34.60822061903451 36.0 36.0 36.0 32.0 36.0 49 34.59424087382851 36.0 36.0 36.0 32.0 36.0 50 34.19797858870244 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 11.0 21 41.0 22 97.0 23 248.0 24 657.0 25 1568.0 26 3241.0 27 6364.0 28 10996.0 29 17645.0 30 26132.0 31 38215.0 32 56912.0 33 95376.0 34 215214.0 35 903844.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.778249306029906 17.617466246166817 12.322801459153865 26.28148298864941 2 15.888876377149042 19.66828552436096 37.62409325201509 26.818744846474896 3 18.98632750212668 23.03787923365435 28.415709025185265 29.560084239033706 4 13.057884019837813 15.777774064826675 34.71014403263781 36.454197882697706 5 14.827312411146329 36.3865458922634 33.112081484220454 15.674060212369811 6 35.10782659989161 34.26405784846596 16.484037769457533 14.14407778218489 7 30.783044437486694 30.004583880287356 19.89738210310752 19.31498957911843 8 27.914450700767055 33.768160265821464 18.860306429854646 19.45708260355683 9 27.12589253089034 14.774332885599861 18.437586946619952 39.662187636889854 10 16.69499811850102 26.950983682536638 31.029623075459007 25.324395123503336 11 36.850111473285274 21.23862111650538 22.17057991533987 19.74068749486947 12 24.767409846116742 23.305072125285946 28.60530175516849 23.322216273428822 13 29.74291768702195 19.73894402217697 24.883423424863228 25.634714865937845 14 23.34633431234168 19.46398384963129 25.236767223875695 31.952914614151336 15 25.10164809020728 27.332130821473484 22.086820581404556 25.479400506914686 16 25.508442809446187 25.916998654613398 23.856929903323948 24.717628632616474 17 24.121816437024677 26.12506656070227 25.211268935747945 24.541848066525105 18 24.547223773993636 25.34805889741334 26.123904245573943 23.980813083019083 19 25.6542562890329 24.866133987329313 25.293357441686286 24.186252281951496 20 25.762988899866336 24.690314988086243 25.335401290172605 24.21129482187482 21 25.90306437119115 24.28606609359688 25.018397269140607 24.792472266071368 22 25.70917567884652 24.58209322784355 25.181194031802395 24.527537061507537 23 24.592263485216442 24.56298767292162 25.592072429667223 25.25267641219472 24 24.87152626937276 24.740110392242613 25.53942984833053 24.848933490054094 25 25.009425662938295 24.515368370889483 25.652477441973147 24.82272852419907 26 24.502016632862397 25.136645764199244 25.875884093009198 24.485453509929155 27 24.85345642339961 24.989375636099737 25.28642195396763 24.870745986533027 28 24.753311757419898 24.96071658185226 25.36956924451612 24.91640241621172 29 24.769042673983492 24.92740926066777 25.3042200336638 24.99932803168494 30 24.787693255437887 24.997057853497086 25.39188664962885 24.823362241436175 31 25.183574079078515 24.622536242622893 25.10896759739524 25.084922080903354 32 24.923177508989866 25.00933493153173 25.071083505866117 24.99640405361229 33 24.67246132555546 24.810269113838533 25.54761705852654 24.969652502079466 34 25.185299803204092 24.87241682666777 25.406359217552833 24.53592415257531 35 25.069285180344874 24.944698984495375 25.567993188803662 24.418022646356093 36 24.629348063761793 25.039718544982755 25.424663345830663 24.906270045424794 37 25.257148170668366 24.76853213961662 25.01378455127744 24.960535138437574 38 24.831773046348044 25.071718475652766 25.172694602426475 24.923813875572712 39 25.438066948093034 24.675513363393794 25.026242972513344 24.860176715999824 40 25.639546667383428 24.71521421862162 25.16575727483199 24.479481839162958 41 24.85904969601518 24.928426085813147 25.64994053971199 24.562583678459685 42 25.287650254486383 25.142426650819687 25.233890641323125 24.3360324533708 43 24.93281888960649 24.762459653193638 25.463002986553608 24.841718470646267 44 24.689303256149824 25.04426070992944 25.151488954255818 25.11494707966492 45 24.82159916021024 25.089009723690282 25.202047169160245 24.887343946939236 46 24.989066806534055 24.86869270970301 25.003160092463578 25.139080391299355 47 25.15912970832879 24.943663506592568 25.255675420435146 24.641531364643495 48 25.048928228427624 25.32600657025832 24.703996931360997 24.921068269953057 49 25.091790373598084 25.16545514512832 24.650746164564485 25.09200831670912 50 24.94991057275571 25.56449585845069 24.806144109352594 24.679449459441003 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 285.0 1 174.0 2 63.0 3 172.5 4 282.0 5 298.5 6 315.0 7 247.0 8 179.0 9 251.5 10 324.0 11 548.5 12 773.0 13 1416.0 14 2059.0 15 2662.0 16 3265.0 17 3175.0 18 3085.0 19 2907.5 20 2730.0 21 3106.0 22 3482.0 23 4138.5 24 4795.0 25 6124.0 26 7453.0 27 9904.0 28 12355.0 29 15013.5 30 17672.0 31 20390.5 32 23109.0 33 27295.5 34 31482.0 35 36559.5 36 41637.0 37 45996.0 38 50355.0 39 54429.0 40 58503.0 41 62837.5 42 67172.0 43 71066.5 44 74961.0 45 81033.0 46 87105.0 47 91954.5 48 96804.0 49 101307.0 50 105810.0 51 105874.5 52 105939.0 53 106432.5 54 106926.0 55 104621.5 56 102317.0 57 97942.0 58 93567.0 59 86810.0 60 80053.0 61 70266.0 62 60479.0 63 51938.0 64 43397.0 65 36701.0 66 30005.0 67 25228.0 68 20451.0 69 17344.5 70 14238.0 71 11395.5 72 8553.0 73 7324.5 74 6096.0 75 4632.0 76 3168.0 77 2718.5 78 2269.0 79 1867.5 80 1466.0 81 1125.0 82 784.0 83 611.5 84 439.0 85 314.0 86 189.0 87 136.5 88 84.0 89 60.0 90 36.0 91 24.0 92 12.0 93 11.0 94 10.0 95 12.0 96 14.0 97 13.0 98 12.0 99 8.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.030728706205237245 2 0.005666286250611123 3 2.905787820826217E-4 4 0.0 5 1.4528939104131085E-4 6 7.264469552065542E-5 7 0.0 8 0.0 9 0.0 10 7.264469552065542E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 5.085128686445879E-4 17 0.0 18 0.0 19 0.0 20 2.1793408656196629E-4 21 0.0 22 0.0 23 0.0 24 0.0012349598238511421 25 1.4528939104131085E-4 26 7.990916507272097E-4 27 7.264469552065543E-4 28 0.0020340514745783517 29 7.264469552065543E-4 30 0.0012349598238511421 31 5.085128686445879E-4 32 9.443810417685206E-4 33 5.811575641652434E-4 34 7.264469552065543E-4 35 4.3586817312393257E-4 36 1.4528939104131085E-4 37 0.0015981833014544194 38 0.0 39 2.905787820826217E-4 40 1.4528939104131085E-4 41 0.0010170257372891759 42 0.004721905208842603 43 0.004358681731239326 44 0.004358681731239326 45 0.0020340514745783517 46 0.001525538605933764 47 9.443810417685206E-4 48 0.004140747644677359 49 0.004140747644677359 50 0.0018161173880163856 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1376563.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.1585380682249 #Duplication Level Percentage of deduplicated Percentage of total 1 76.35371898522088 45.933281102229564 2 13.827252323397458 16.63654570552114 3 4.329094642362303 7.812960145305032 4 1.8528490421856831 4.458587585560059 5 0.995407559036205 2.994113176683919 6 0.6107595008988643 2.2045439211212625 7 0.41284746830435404 1.7385410096850427 8 0.28868626715328227 1.3893555033851581 9 0.2166615031031832 1.1730635354116508 >10 1.0386727449592574 10.605671120458721 >50 0.04915156597392735 2.012946299746778 >100 0.02368386549596328 2.561234139563291 >500 0.0010930787178130659 0.38446520990198374 >1k 1.2145319086811845E-4 0.09469154542625827 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.1793408656196629E-4 2 0.0 0.0 0.0 0.0 2.1793408656196629E-4 3 0.0 0.0 0.0 0.0 2.1793408656196629E-4 4 0.0 0.0 0.0 0.0 2.1793408656196629E-4 5 0.0 0.0 0.0 0.0 2.1793408656196629E-4 6 7.264469552065542E-5 0.0 0.0 0.0 2.905787820826217E-4 7 7.264469552065542E-5 0.0 0.0 0.0 2.905787820826217E-4 8 7.264469552065542E-5 0.0 0.0 0.0 2.905787820826217E-4 9 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 2.905787820826217E-4 10 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 2.905787820826217E-4 11 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 2.905787820826217E-4 12 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 0.0012349598238511424 13 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 0.001670827996975075 14 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 0.001670827996975075 15 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 0.001670827996975075 16 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 0.0017434726924957303 17 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 0.0017434726924957303 18 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 0.0017434726924957303 19 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 0.0017434726924957303 20 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 0.0018887620835370412 21 7.264469552065542E-5 0.0 0.0 7.264469552065542E-5 0.0019614067790576966 22 7.264469552065542E-5 0.0 0.0 2.905787820826217E-4 0.0021066961700990073 23 7.264469552065542E-5 0.0 0.0 4.3586817312393257E-4 0.0021066961700990073 24 7.264469552065542E-5 0.0 0.0 7.264469552065543E-4 0.0021066961700990073 25 7.264469552065542E-5 0.0 0.0 8.717363462478651E-4 0.0021066961700990073 26 7.264469552065542E-5 0.0 0.0 0.001017025737289176 0.0021066961700990073 27 7.264469552065542E-5 0.0 0.0 0.0012349598238511424 0.002179340865619663 28 7.264469552065542E-5 0.0 0.0 0.0015981833014544194 0.002179340865619663 29 7.264469552065542E-5 0.0 0.0 0.0029784325163468724 0.002179340865619663 30 7.264469552065542E-5 0.0 0.0 0.004431326426759981 0.002179340865619663 31 7.264469552065542E-5 0.0 0.0 0.008572074071437341 0.002179340865619663 32 7.264469552065542E-5 0.0 0.0 0.01256753232507339 0.0022519855611403184 33 7.264469552065542E-5 0.0 0.0 0.01779795040256058 0.0022519855611403184 34 7.264469552065542E-5 0.0 0.0 0.021866053351717284 0.0022519855611403184 35 7.264469552065542E-5 0.0 0.0 0.029203167599303484 0.0022519855611403184 36 7.264469552065542E-5 0.0 0.0 0.038429043930426725 0.0022519855611403184 37 7.264469552065542E-5 0.0 0.0 0.05288533833903715 0.0022519855611403184 38 7.264469552065542E-5 0.0 0.0 0.07249940612961411 0.0024699196477022847 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1575 0.0 25.84541 1 GGTATCA 685 0.0 22.164133 1 GTAGGAC 690 0.0 21.999527 3 TAGGACG 495 0.0 20.888441 4 TGTAGGA 805 0.0 20.4972 2 TTAGTAC 95 1.5976675E-5 18.525917 3 ATACGAA 185 2.1827873E-11 17.83875 40 TAGGACC 635 0.0 17.668913 4 CGCGTAA 165 1.6607373E-9 17.332962 10 CTGTAGG 920 0.0 17.220148 1 CTAGGAC 230 0.0 17.217024 3 CGCAATA 205 5.456968E-12 17.170986 36 TATAGTG 205 5.456968E-12 17.170362 5 TATCAAC 2385 0.0 16.972998 2 TCAACGC 2420 0.0 16.726915 4 AACGCAG 2475 0.0 16.71075 6 ATTACAC 265 0.0 16.603416 3 CAACGCA 2495 0.0 16.488625 5 GATATAC 295 0.0 16.409409 1 ATCAACG 2470 0.0 16.388313 3 >>END_MODULE