FastQCFastQC Report
Thu 2 Feb 2017
SRR4062172_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062172_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1819
Sequences flagged as poor quality0
Sequence length50
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT30.16492578339747113No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT30.16492578339747113No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTA30.16492578339747113No Hit
CGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTT30.16492578339747113No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.16492578339747113No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC30.16492578339747113No Hit
CCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGG30.16492578339747113No Hit
GTCTACAGGGTCTCAAAAAAAAAAAAGCAAACAACAAAACTGGAATGTTC20.10995052226498077No Hit
GAACCGCTCGTTGCCAATAGTGATGACCTGGCCGTCAGGCAGCTCATAGC20.10995052226498077No Hit
ATTTGACCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG20.10995052226498077No Hit
CTTCTGGAAACAAGGTTAAAGCTGAGCCGGCCAAAATTGATGCTTTCCGA20.10995052226498077No Hit
GTCGTCATCATGGTCATCGTTGCTAGTCTGGTTCTCCTGGGAGGTGTGAT20.10995052226498077No Hit
TGGCTATTCCATGCAAGGGCTCTGCAAATTCGGCTTTTATGAAGTCTTCA20.10995052226498077No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG20.10995052226498077No Hit
GTACAGGGACTTGCCATATTTCCTCTTGAATTCAGATCTGATTTTCAGCA20.10995052226498077No Hit
ATGGGAAGCTGCACGTGAACGGTCAAATCACCGTTCATTCTTTGGATGCT20.10995052226498077No Hit
CTCTGGAAGAGATCAGTCCTGTCCGTCCATAAAGCTGCCTTGTGTGCCCC20.10995052226498077No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT20.10995052226498077No Hit
CAGATGTTCATGACACTGGCCACAACGGCAGACCCTGCAGAGCCCACGAT20.10995052226498077No Hit
GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAG20.10995052226498077No Hit
CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTC20.10995052226498077No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA20.10995052226498077No Hit
CTTCATGATGGAGTTGAAAGTGGTCTCATGGATACCACAGGACTCCATGC20.10995052226498077No Hit
CTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACC20.10995052226498077No Hit
GCAGATGCACCCAACAGTGGTGATCAGTGCTTACCGCATGGCACTGGATG20.10995052226498077No Hit
TCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACAAGT20.10995052226498077No Hit
GCGGCTCAGGGCCCGCAAGGAATGCTTTGACCGGGATGGCAAGGAACGGG20.10995052226498077No Hit
TATTTTACCAGTATCCTCAGTATCTAAGTGCGTATCCCAGTTACAAAGAA20.10995052226498077No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGTCGCTAGAGGTGAAA20.10995052226498077No Hit
ATCCTGCTTCTTCTCATTTTGGAGAGTGAACTTGGGCAGACATGGGTGCC20.10995052226498077No Hit
ATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCG20.10995052226498077No Hit
GTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTG20.10995052226498077No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA20.10995052226498077No Hit
GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGA20.10995052226498077No Hit
GTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCA20.10995052226498077No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC20.10995052226498077No Hit
GATTAAGACTGGGGTGGCAGGTGTTAGGGGTAATATTCATTTAGCCTTCT20.10995052226498077No Hit
AGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGA20.10995052226498077No Hit
GGAGAGAGGCGGACACTTCACGTAGTCCAGTGTCTTGAGTGTGAGGAGTG20.10995052226498077No Hit
GTCGTGTTCAGCAGGATGTCTCCTGGGTGCTCTTGATTGCCGCTGTGGAA20.10995052226498077No Hit
CTCATGAACTGAAGGTCATTGCTCTGAACACCTGTCTCAGCACCTAGCTC20.10995052226498077No Hit
GATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATCAATCCA20.10995052226498077No Hit
ATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCC20.10995052226498077No Hit
TATCAACGCAGAGTACATGGGCTCTAGCTGCCATCTTGCGTCCCCGCGTG20.10995052226498077No Hit
GCATCAGACACATGATCCGAAAGAACAAGTACCGCCCTGATCTGCGTATG20.10995052226498077No Hit
GTCCCGTCCACGCCCACGGTTACATTCAGGTGGTCTAGGCCTCTGTTCTC20.10995052226498077No Hit
CCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCG20.10995052226498077No Hit
GCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGT20.10995052226498077No Hit
CCTACGTGCTGTGGACTTCGCGGAGCGACACGGCTACATTAAAGGCATCG20.10995052226498077No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20.10995052226498077No Hit
CAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTC20.10995052226498077No Hit
AGGCTGTCCTGGCCCGAAGCAAGCTTGAGAGTCTGTGCCGGGAAGCTGCA20.10995052226498077No Hit
CGAAGAGAGTCTCCAGCAGGCGCTTGATGTAGTGGAACGAGTGGCACATG20.10995052226498077No Hit
ATAGCACAGAAGCCCATCATGTCCATCCCAGACTGGTTTCTAGTAGGCTG20.10995052226498077No Hit
TGTCGACACTCTGCACATGCTCCTCAAATTTGGTGATCTCCTCCTCGAGC20.10995052226498077No Hit
GCTTAATTTGACCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAG20.10995052226498077No Hit
CAGTAAGAGTGACCTTGGCCGGAAGATCAAGGAGGGGGTAGAAGAGGCCG20.10995052226498077No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)