FastQCFastQC Report
Thu 2 Feb 2017
SRR4062167_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062167_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1689222
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCGTA300.00574566929.33331730
GGTATCA9100.029.0212781
GTATCAA20650.025.5780741
GTATCGA500.002581311921.9993349
TAGCGAA550.00448512319.99939512
GTATAAG2550.018.1240731
TCTAGCG3600.017.7222128
CGCAATA3700.017.2432336
CGCCGGT4000.017.0494847
CTAGCGG3800.016.78946329
GGTATAA1053.7643127E-516.767851
TCAACGC31650.016.6124524
GTCCTAT4000.016.5058521
TAGCGGC3900.016.35896330
ATCAACG32650.016.1710263
CAACGCA32700.016.1463015
GTAATAC1805.2714313E-915.8884083
TATCAAC33150.015.8607572
AACGCAG33350.015.7656396
TAAGACC2252.5465852E-1115.64397054
Produced by FastQC (version 0.11.5)