##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062166_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 698983 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.2865076833056 32.0 32.0 32.0 32.0 32.0 2 31.480655466585024 32.0 32.0 32.0 32.0 32.0 3 31.592028704560768 32.0 32.0 32.0 32.0 32.0 4 31.66487453915188 32.0 32.0 32.0 32.0 32.0 5 31.637683606039058 32.0 32.0 32.0 32.0 32.0 6 35.28812288710884 36.0 36.0 36.0 36.0 36.0 7 35.29341343065568 36.0 36.0 36.0 36.0 36.0 8 35.256930426061864 36.0 36.0 36.0 36.0 36.0 9 35.323522889684014 36.0 36.0 36.0 36.0 36.0 10 35.2181555202344 36.0 36.0 36.0 36.0 36.0 11 35.32587058626605 36.0 36.0 36.0 36.0 36.0 12 35.262531420649715 36.0 36.0 36.0 36.0 36.0 13 35.28146607285156 36.0 36.0 36.0 36.0 36.0 14 35.24640513431657 36.0 36.0 36.0 36.0 36.0 15 35.2378341104147 36.0 36.0 36.0 36.0 36.0 16 35.24950678342678 36.0 36.0 36.0 36.0 36.0 17 35.22894262092211 36.0 36.0 36.0 36.0 36.0 18 35.22765360530943 36.0 36.0 36.0 36.0 36.0 19 35.216958066219064 36.0 36.0 36.0 36.0 36.0 20 35.209676057929876 36.0 36.0 36.0 36.0 36.0 21 35.19746689118333 36.0 36.0 36.0 36.0 36.0 22 35.18113602190611 36.0 36.0 36.0 36.0 36.0 23 35.15232845434009 36.0 36.0 36.0 36.0 36.0 24 35.14219945263333 36.0 36.0 36.0 36.0 36.0 25 35.125030222480376 36.0 36.0 36.0 36.0 36.0 26 35.088099424449524 36.0 36.0 36.0 36.0 36.0 27 35.073844428262205 36.0 36.0 36.0 36.0 36.0 28 35.0530742521635 36.0 36.0 36.0 36.0 36.0 29 35.03163596253414 36.0 36.0 36.0 36.0 36.0 30 35.00479983061104 36.0 36.0 36.0 36.0 36.0 31 35.014119084441255 36.0 36.0 36.0 36.0 36.0 32 34.98166765143072 36.0 36.0 36.0 36.0 36.0 33 34.96709934290247 36.0 36.0 36.0 36.0 36.0 34 34.93688401577721 36.0 36.0 36.0 36.0 36.0 35 34.932261585761026 36.0 36.0 36.0 36.0 36.0 36 34.9107117054349 36.0 36.0 36.0 36.0 36.0 37 34.89457826585196 36.0 36.0 36.0 36.0 36.0 38 34.873848147952096 36.0 36.0 36.0 32.0 36.0 39 34.85389773427966 36.0 36.0 36.0 32.0 36.0 40 34.853687428735746 36.0 36.0 36.0 32.0 36.0 41 34.81664217870821 36.0 36.0 36.0 32.0 36.0 42 34.787147899162065 36.0 36.0 36.0 32.0 36.0 43 34.78215063885674 36.0 36.0 36.0 32.0 36.0 44 34.728322434165065 36.0 36.0 36.0 32.0 36.0 45 34.70870393128302 36.0 36.0 36.0 32.0 36.0 46 34.67411939918424 36.0 36.0 36.0 32.0 36.0 47 34.6487668512682 36.0 36.0 36.0 32.0 36.0 48 34.61009638288771 36.0 36.0 36.0 32.0 36.0 49 34.600675552910445 36.0 36.0 36.0 32.0 36.0 50 34.1945526572177 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 10.0 21 20.0 22 49.0 23 128.0 24 373.0 25 858.0 26 1679.0 27 3151.0 28 5442.0 29 8519.0 30 12720.0 31 18660.0 32 28402.0 33 47876.0 34 108980.0 35 462114.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.81920522313832 18.15175094491919 12.271283759125394 25.7577600728171 2 16.13787045064998 19.859474122464395 37.477859519905685 26.524795906979936 3 18.756133920472916 23.450389280410654 28.460389537928016 29.33308726118841 4 12.630922354334798 15.911116579373175 35.26595067405073 36.1920103922413 5 14.518235779697076 36.676571533213256 33.19336807905199 15.611824608037677 6 34.75020136398167 35.154646107272995 16.337307202034957 13.757845326710378 7 30.669844617107998 30.203595795605903 20.042976724755825 19.083582862530278 8 28.062342002595198 33.37191319388311 18.89645384794766 19.669290955574027 9 26.918108165720767 14.403926848006318 18.67456003937149 40.003404946901426 10 16.508556002077306 26.932271600310738 30.892453750663464 25.666718646948496 11 37.09303373615667 21.396371585575043 21.844021957615563 19.66657272065272 12 24.46411429176389 23.74864624747669 28.668508390046682 23.118731070712737 13 29.587271793448483 19.838966040661933 24.914339833729862 25.659422332159725 14 23.33061032957883 19.681165350230263 25.144388347069956 31.84383597312095 15 25.089308323664522 27.364614017794427 22.199824602315076 25.346253056225976 16 25.502589487538984 26.080717617099204 23.813413831583162 24.60327906377865 17 23.84879174457748 26.33683508754863 25.1901691457446 24.62420402212929 18 24.48661052788198 25.4734742811689 26.23729938682255 23.802615804126575 19 25.489604182075958 25.025072140524163 25.60119487884541 23.88412879855447 20 25.631095462979786 24.434929032608803 25.548833090361285 24.385142414050126 21 26.271025189453823 24.295154531655278 25.02120938563599 24.412610893254914 22 25.70734910577224 24.458105561937842 25.43681319860426 24.397732133685654 23 24.392581793834758 24.65510606123468 25.844119241812745 25.108192903117814 24 24.753711847869315 24.843700373974574 25.579345844933606 24.823241933222505 25 24.807827394449923 24.527848396451404 25.615431606867713 25.04889260223096 26 24.36106898623709 25.56010186271424 25.861111905920055 24.21771724512862 27 24.809865804457925 25.132192623537154 25.396291739391685 24.661649832613236 28 24.520441331318956 24.993132811427003 25.739653435883348 24.746772421370693 29 24.413504210408853 25.24256704750623 25.680060430740703 24.66386831134421 30 24.339744653576968 25.22175423335985 25.888161471418027 24.55033964164516 31 25.04438616896931 24.808470640748865 25.192316221231252 24.954826969050572 32 24.6683386243689 25.035015257925465 25.15032597452577 25.146320143179857 33 24.514187040314287 24.72263273927978 25.642254532656732 25.120925687749203 34 25.022068028184126 24.961693908938088 25.640258950606242 24.37597911227154 35 25.230370409580775 24.697453300008725 25.694473256145002 24.377703034265497 36 24.36875966585644 25.214991537681282 25.52200989726473 24.894238899197546 37 25.192676642311746 24.92871643806807 25.272508508961057 24.60609841065913 38 24.602601207754695 25.080152163929593 25.523796716086082 24.793449912229626 39 25.289278663194942 24.71086440241495 25.21030644653638 24.789550487853727 40 25.325687929016773 24.90307332663788 25.474618802773175 24.296619941572175 41 24.431949869093096 25.17418487202598 25.939024564716657 24.45484069416427 42 25.33922214973274 25.219757579919648 25.436939875699622 24.004080394647985 43 24.964089298897214 24.58309249795409 25.465694550157664 24.987123652991034 44 24.379433385124713 25.31883174668578 25.32813130402685 24.97360356416265 45 24.676236966499182 25.309456226894504 25.239782078721774 24.77452472788454 46 24.54954890509696 25.251728982525616 25.21481731586372 24.983904796513706 47 24.753281237928736 25.08033202951755 25.581495162910205 24.584891569643506 48 25.099826742836868 25.538477826373718 24.807106548147896 24.55458888264152 49 24.92063196839872 25.519379534421905 24.878855555189933 24.681132941989446 50 24.895560311773927 25.81191127490815 24.699413993201404 24.593114420116517 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 305.0 1 171.0 2 37.0 3 116.0 4 195.0 5 199.5 6 204.0 7 143.5 8 83.0 9 140.5 10 198.0 11 336.5 12 475.0 13 874.5 14 1274.0 15 1617.0 16 1960.0 17 1956.0 18 1952.0 19 1854.0 20 1756.0 21 2023.0 22 2290.0 23 2669.0 24 3048.0 25 3525.0 26 4002.0 27 5216.5 28 6431.0 29 7678.0 30 8925.0 31 10697.0 32 12469.0 33 14587.5 34 16706.0 35 18876.5 36 21047.0 37 23755.0 38 26463.0 39 28607.5 40 30752.0 41 33291.0 42 35830.0 43 37529.5 44 39229.0 45 42036.0 46 44843.0 47 47332.0 48 49821.0 49 51457.0 50 53093.0 51 52382.0 52 51671.0 53 51002.5 54 50334.0 55 50432.5 56 50531.0 57 48297.0 58 46063.0 59 42367.5 60 38672.0 61 34115.0 62 29558.0 63 25522.5 64 21487.0 65 18286.5 66 15086.0 67 12891.5 68 10697.0 69 9426.0 70 8155.0 71 6419.0 72 4683.0 73 4075.0 74 3467.0 75 2617.0 76 1767.0 77 1565.5 78 1364.0 79 1148.5 80 933.0 81 732.0 82 531.0 83 428.0 84 325.0 85 246.0 86 167.0 87 111.0 88 55.0 89 37.0 90 19.0 91 14.0 92 9.0 93 7.5 94 6.0 95 6.5 96 7.0 97 7.5 98 8.0 99 4.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03519398898113402 2 0.00529340484675593 3 1.430649958582684E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 4.291949875748051E-4 17 0.0 18 1.430649958582684E-4 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 7.153249792913418E-4 25 2.861299917165368E-4 26 4.291949875748051E-4 27 4.291949875748051E-4 28 0.0010014549710078786 29 1.430649958582684E-4 30 0.0015737149544409522 31 5.722599834330736E-4 32 2.861299917165368E-4 33 0.0 34 0.0011445199668661471 35 0.0 36 2.861299917165368E-4 37 0.0020029099420157573 38 0.0 39 4.291949875748051E-4 40 1.430649958582684E-4 41 0.001859844946157489 42 0.004435014871606319 43 0.003862754888173246 44 0.0035766248964567092 45 0.0021459749378740255 46 0.0024321049295905625 47 0.0012875849627244154 48 0.0031474299088819044 49 0.003433559900598441 50 0.0021459749378740255 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 698983.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.31530537914899 #Duplication Level Percentage of deduplicated Percentage of total 1 77.30804150188655 48.94782255955871 2 14.371490825303521 18.198706607154605 3 4.276552187232967 8.123136231135685 4 1.632700055696001 4.134996104757835 5 0.7320496724993152 2.3174974283500074 6 0.42280618850969426 1.6062061765011195 7 0.24520897449654822 1.0867836771369837 8 0.19284184317420217 0.9767872152362056 9 0.1200312233439328 0.6839832204948548 >10 0.6108275592268211 6.887032897603665 >50 0.05065302236435344 2.2971790955123157 >100 0.035206954761125064 4.1571286833646495 >500 0.0015899915049929665 0.5827401031933592 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 770 0.11016004681086665 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 2.8612999171653673E-4 0.0 0.0 0.0 6 0.0 2.8612999171653673E-4 0.0 0.0 0.0 7 0.0 2.8612999171653673E-4 0.0 0.0 0.0 8 0.0 2.8612999171653673E-4 0.0 0.0 0.0 9 1.4306499585826836E-4 2.8612999171653673E-4 0.0 0.0 0.0 10 1.4306499585826836E-4 2.8612999171653673E-4 0.0 1.4306499585826836E-4 0.0 11 1.4306499585826836E-4 2.8612999171653673E-4 0.0 1.4306499585826836E-4 0.0 12 1.4306499585826836E-4 2.8612999171653673E-4 0.0 1.4306499585826836E-4 1.4306499585826836E-4 13 1.4306499585826836E-4 2.8612999171653673E-4 0.0 1.4306499585826836E-4 4.291949875748051E-4 14 1.4306499585826836E-4 2.8612999171653673E-4 0.0 1.4306499585826836E-4 4.291949875748051E-4 15 1.4306499585826836E-4 2.8612999171653673E-4 0.0 1.4306499585826836E-4 5.722599834330735E-4 16 1.4306499585826836E-4 2.8612999171653673E-4 0.0 1.4306499585826836E-4 5.722599834330735E-4 17 1.4306499585826836E-4 2.8612999171653673E-4 0.0 1.4306499585826836E-4 5.722599834330735E-4 18 1.4306499585826836E-4 2.8612999171653673E-4 0.0 2.8612999171653673E-4 5.722599834330735E-4 19 1.4306499585826836E-4 2.8612999171653673E-4 0.0 2.8612999171653673E-4 5.722599834330735E-4 20 1.4306499585826836E-4 2.8612999171653673E-4 0.0 4.291949875748051E-4 7.153249792913418E-4 21 1.4306499585826836E-4 2.8612999171653673E-4 0.0 8.583899751496102E-4 7.153249792913418E-4 22 1.4306499585826836E-4 2.8612999171653673E-4 0.0 0.001144519966866147 7.153249792913418E-4 23 1.4306499585826836E-4 2.8612999171653673E-4 0.0 0.001573714954440952 7.153249792913418E-4 24 1.4306499585826836E-4 2.8612999171653673E-4 0.0 0.0018598449461574888 8.583899751496102E-4 25 1.4306499585826836E-4 2.8612999171653673E-4 0.0 0.002289039933732294 8.583899751496102E-4 26 1.4306499585826836E-4 2.8612999171653673E-4 0.0 0.002575169925448831 8.583899751496102E-4 27 1.4306499585826836E-4 2.8612999171653673E-4 0.0 0.0032904949047401727 8.583899751496102E-4 28 1.4306499585826836E-4 2.8612999171653673E-4 0.0 0.004578079867464588 8.583899751496102E-4 29 1.4306499585826836E-4 2.8612999171653673E-4 0.0 0.006008729826047271 8.583899751496102E-4 30 1.4306499585826836E-4 4.291949875748051E-4 0.0 0.01044374469765359 8.583899751496102E-4 31 1.4306499585826836E-4 4.291949875748051E-4 0.0 0.017740059486425278 8.583899751496102E-4 32 1.4306499585826836E-4 4.291949875748051E-4 0.0 0.026180894242063112 8.583899751496102E-4 33 1.4306499585826836E-4 4.291949875748051E-4 0.0 0.03333414403497653 8.583899751496102E-4 34 1.4306499585826836E-4 4.291949875748051E-4 0.0 0.041631913794756094 8.583899751496102E-4 35 1.4306499585826836E-4 4.291949875748051E-4 0.0 0.052361788484126225 8.583899751496102E-4 36 1.4306499585826836E-4 4.291949875748051E-4 0.0 0.06409311814450423 8.583899751496102E-4 37 1.4306499585826836E-4 7.153249792913418E-4 0.0 0.08154704763921297 8.583899751496102E-4 38 1.4306499585826836E-4 7.153249792913418E-4 0.0 0.10257760203037843 0.0010014549710078786 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTAGGAC 245 0.0 24.244228 3 AACCGTA 55 1.5929797E-4 23.999336 7 CGTCGTA 170 0.0 23.293474 10 GTATCAA 1075 0.0 23.131561 1 GTCCTAC 200 0.0 23.105974 1 ATACCGT 175 0.0 22.627945 6 TACCGTC 175 0.0 22.627945 7 CTTAACG 50 0.002578701 22.000967 41 ACCGTCG 195 0.0 21.435305 8 TGTAGGA 270 0.0 21.1846 2 TATATCA 105 7.7367076E-8 20.951801 4 GTCGTAG 180 0.0 20.777203 11 GATTTCG 85 6.105034E-6 20.70679 41 TTAGACG 55 0.0044824705 19.999447 4 CGAAAGC 145 2.9467628E-10 19.723593 19 GGTATCA 535 0.0 19.3321 1 CCGTCGT 210 0.0 18.85662 9 ATTTCGT 95 1.5949356E-5 18.52713 42 ACCGTAA 60 0.0074102357 18.332827 8 GCGAAAG 140 8.3597115E-8 17.285236 18 >>END_MODULE