Basic Statistics
Measure | Value |
---|---|
Filename | SRR4062152_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1180180 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 1902 | 0.16116185666593233 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 1311 | 0.11108474978393126 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTTCTAG | 85 | 1.7238563E-8 | 14.523865 | 1 |
GGTATCA | 470 | 0.0 | 14.143536 | 1 |
CGTCGTA | 100 | 1.00499165E-8 | 13.301129 | 10 |
CTATACC | 50 | 0.0015001312 | 13.298871 | 4 |
GTATCAA | 1280 | 0.0 | 12.983323 | 1 |
GTCCTAT | 135 | 2.7284841E-11 | 12.661832 | 1 |
GTCCTAG | 145 | 7.2759576E-12 | 12.443523 | 1 |
ATACCGT | 105 | 2.7145325E-7 | 11.762902 | 6 |
TACCGTC | 105 | 2.7145325E-7 | 11.762902 | 7 |
GCCGGTC | 170 | 1.8189894E-12 | 11.73629 | 8 |
GCACCGT | 65 | 8.015189E-4 | 11.693299 | 6 |
ACCGTCG | 90 | 7.449131E-6 | 11.612097 | 8 |
CGGTCCA | 180 | 0.0 | 11.612097 | 10 |
TCTATAC | 90 | 7.4738E-6 | 11.608648 | 3 |
GCGTAAC | 75 | 2.0705535E-4 | 11.401452 | 11 |
TTTCGGA | 135 | 4.7184585E-9 | 11.259738 | 17 |
TAAGACA | 85 | 5.3246975E-5 | 11.175522 | 4 |
CCGGTCC | 180 | 3.6379788E-12 | 11.084274 | 9 |
TCTACGA | 60 | 0.005885371 | 11.080512 | 2 |
ACGGTAT | 155 | 3.110472E-10 | 11.033195 | 9 |