##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062147_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2638652 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.266774853220507 32.0 32.0 32.0 32.0 32.0 2 31.43971543045464 32.0 32.0 32.0 32.0 32.0 3 31.578534797313175 32.0 32.0 32.0 32.0 32.0 4 31.655703745700457 32.0 32.0 32.0 32.0 32.0 5 31.631191229461102 32.0 32.0 32.0 32.0 32.0 6 35.27684097789326 36.0 36.0 36.0 36.0 36.0 7 35.27924940462024 36.0 36.0 36.0 36.0 36.0 8 35.23024028935987 36.0 36.0 36.0 36.0 36.0 9 35.316305446872114 36.0 36.0 36.0 36.0 36.0 10 35.19686301945084 36.0 36.0 36.0 36.0 36.0 11 35.31904699824001 36.0 36.0 36.0 36.0 36.0 12 35.241846215416054 36.0 36.0 36.0 36.0 36.0 13 35.27317395397347 36.0 36.0 36.0 36.0 36.0 14 35.236637874187274 36.0 36.0 36.0 36.0 36.0 15 35.21555021276015 36.0 36.0 36.0 36.0 36.0 16 35.228426105450815 36.0 36.0 36.0 36.0 36.0 17 35.209600583934524 36.0 36.0 36.0 36.0 36.0 18 35.20370780231725 36.0 36.0 36.0 36.0 36.0 19 35.19204957682938 36.0 36.0 36.0 36.0 36.0 20 35.187681058358585 36.0 36.0 36.0 36.0 36.0 21 35.17785748177479 36.0 36.0 36.0 36.0 36.0 22 35.16811121739433 36.0 36.0 36.0 36.0 36.0 23 35.13282198637789 36.0 36.0 36.0 36.0 36.0 24 35.12161020096625 36.0 36.0 36.0 36.0 36.0 25 35.10171254110053 36.0 36.0 36.0 36.0 36.0 26 35.0625224546473 36.0 36.0 36.0 36.0 36.0 27 35.049598431320234 36.0 36.0 36.0 36.0 36.0 28 35.02782102376516 36.0 36.0 36.0 36.0 36.0 29 35.00651544803938 36.0 36.0 36.0 36.0 36.0 30 34.984754715665424 36.0 36.0 36.0 36.0 36.0 31 34.98277264300105 36.0 36.0 36.0 36.0 36.0 32 34.95489552999031 36.0 36.0 36.0 36.0 36.0 33 34.933389094128366 36.0 36.0 36.0 36.0 36.0 34 34.920450290527135 36.0 36.0 36.0 36.0 36.0 35 34.90449896386488 36.0 36.0 36.0 36.0 36.0 36 34.88198633241519 36.0 36.0 36.0 32.0 36.0 37 34.86166572931936 36.0 36.0 36.0 32.0 36.0 38 34.843066080710905 36.0 36.0 36.0 32.0 36.0 39 34.81648167321799 36.0 36.0 36.0 32.0 36.0 40 34.806252207566594 36.0 36.0 36.0 32.0 36.0 41 34.77828717087361 36.0 36.0 36.0 32.0 36.0 42 34.7472069071632 36.0 36.0 36.0 32.0 36.0 43 34.74951983058016 36.0 36.0 36.0 32.0 36.0 44 34.69696875525837 36.0 36.0 36.0 32.0 36.0 45 34.672610105462944 36.0 36.0 36.0 32.0 36.0 46 34.636115334648146 36.0 36.0 36.0 32.0 36.0 47 34.603998177857484 36.0 36.0 36.0 32.0 36.0 48 34.57280042991649 36.0 36.0 36.0 32.0 36.0 49 34.557673008793884 36.0 36.0 36.0 32.0 36.0 50 34.14648691832041 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 9.0 20 35.0 21 65.0 22 202.0 23 500.0 24 1193.0 25 2734.0 26 5933.0 27 11538.0 28 20090.0 29 32541.0 30 49388.0 31 73741.0 32 112152.0 33 190145.0 34 433341.0 35 1705043.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.34488715781604 18.495192393355218 12.441698552467418 25.71822189636132 2 15.8326678701223 20.190766541608856 37.92067729057996 26.055888297688888 3 18.752254942682768 23.662724243627796 28.76564058563325 28.819380228056186 4 12.585213965312592 16.402466107694384 35.68462229956811 35.32769762742491 5 14.43161129243265 36.756836445275844 33.28578380172906 15.525768460562439 6 34.21310239679654 35.42224480955581 16.721296937407697 13.643355856239959 7 30.28527445074227 30.382407380738346 20.1729898448147 19.15932832370468 8 27.77819886820998 33.91750787902308 18.961196853544916 19.343096399222027 9 26.778104880825516 14.766213960764816 18.99197014233025 39.46371101607942 10 16.61830860477896 26.90678945672977 30.91186781119133 25.563034127299943 11 36.81694289356838 21.483469589775385 22.279671589887563 19.41991592676867 12 24.4771951738994 23.835011210269485 28.813576022908666 22.874217592922445 13 29.470805547681167 19.688803222251362 25.269190480593878 25.571200749473594 14 23.287913677135144 20.112580211410975 25.35741734794888 31.242088763505 15 24.882705260110086 27.756217947649027 22.28683433813932 25.074242454101565 16 25.237017116471133 26.30594384657481 24.203601265506165 24.25343777144789 17 23.54941083553269 26.529152006403265 25.379739351759913 24.54169780630413 18 24.201722774250932 25.42302866123637 26.79054562350231 23.584702941010388 19 25.45663467558435 25.162279830762067 25.576620183336036 23.80446531031754 20 25.516278241294298 24.89141206945231 25.37643373777071 24.215875951482673 21 26.40917650723798 24.55504725710221 24.96089858037308 24.074877655286738 22 25.61667851615143 24.742292655492275 25.475242661783366 24.165786166572932 23 24.24328786061974 24.820893395567133 25.934568105229488 25.001250638583638 24 24.555773261124145 25.265876610210604 25.892034881737874 24.286315246927384 25 24.623396291056523 24.869241797601727 25.87437738024269 24.63298453109906 26 23.97808422270959 26.000219051657915 26.194219992291508 23.827476733340987 27 24.716993717203675 25.165255961986393 25.66127018752885 24.456480133281083 28 24.17918966486926 25.277759670614703 25.964370661544784 24.57868000297126 29 24.236226148233126 25.21388851306411 25.83936200491086 24.710523333791905 30 24.124041877872 25.33323227059548 26.095144251267232 24.447581600265288 31 24.864920995315394 24.96986137939947 25.465116323137554 24.700101302147583 32 24.615870881529094 25.24494709567196 25.284475169131266 24.85470685366768 33 24.182526740009756 25.066047056656643 25.872292980233446 24.879133223100155 34 24.833246672134155 25.357799583723057 25.927527487770156 23.881426256372627 35 25.073598297309836 25.076819643999503 26.019234092611065 23.8303479660796 36 23.913190128247884 25.604364369523697 25.74981808810599 24.732627414122426 37 24.95984616095948 25.322235032035906 25.41535252379859 24.30256628320603 38 24.396851119435226 25.192029869797157 25.75296022362934 24.65815878713828 39 25.166431064605494 24.844635284219464 25.329583912863875 24.65934973831117 40 25.45564036747593 25.144458395186327 25.54913518243616 23.85076605490158 41 24.202367751045813 25.394846249292247 26.31646366929405 24.086322330367896 42 25.226016686614706 25.703215663920936 25.519286934124487 23.551480715339874 43 24.696442201791747 24.96390051778596 25.8176674845426 24.521989795879694 44 24.14172491840209 25.634705148437703 25.4910276409601 24.732542292200105 45 24.36271810425951 25.68440935666752 25.465656076031546 24.48721646304142 46 24.276163694108195 25.364476347126107 25.397903417747425 24.961456541018276 47 24.705716936454568 25.318121318145575 25.753652672461623 24.222509072938237 48 25.146406281030327 25.657407028411082 24.82759457095342 24.368592119605175 49 24.597630142255895 25.78032294191328 25.019035040012433 24.603011875818392 50 24.654609289905352 26.026432138788437 24.824206418085915 24.494752153220297 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 713.0 1 408.0 2 103.0 3 271.5 4 440.0 5 474.0 6 508.0 7 408.0 8 308.0 9 429.5 10 551.0 11 945.0 12 1339.0 13 2605.5 14 3872.0 15 5123.0 16 6374.0 17 6718.0 18 7062.0 19 7197.5 20 7333.0 21 8680.5 22 10028.0 23 11960.5 24 13893.0 25 17774.5 26 21656.0 27 27546.0 28 33436.0 29 38470.0 30 43504.0 31 48194.5 32 52885.0 33 59963.5 34 67042.0 35 76324.0 36 85606.0 37 96229.5 38 106853.0 39 113630.0 40 120407.0 41 127953.5 42 135500.0 43 138053.5 44 140607.0 45 152381.0 46 164155.0 47 174382.5 48 184610.0 49 192532.5 50 200455.0 51 193908.0 52 187361.0 53 186478.0 54 185595.0 55 185842.5 56 186090.0 57 179492.5 58 172895.0 59 157729.5 60 142564.0 61 125229.5 62 107895.0 63 92376.5 64 76858.0 65 65210.5 66 53563.0 67 46192.0 68 38821.0 69 34332.0 70 29843.0 71 23051.0 72 16259.0 73 14428.0 74 12597.0 75 9273.5 76 5950.0 77 5332.5 78 4715.0 79 4096.5 80 3478.0 81 2803.0 82 2128.0 83 1770.5 84 1413.0 85 1103.0 86 793.0 87 536.5 88 280.0 89 191.0 90 102.0 91 71.0 92 40.0 93 50.5 94 61.0 95 59.0 96 57.0 97 48.5 98 40.0 99 27.0 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03232711248016032 2 0.005267841306849103 3 1.5159255559277993E-4 4 0.0 5 0.0 6 1.8949069449097493E-4 7 0.0 8 0.0 9 0.0 10 7.579627779638997E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 9.095553335566797E-4 17 0.0 18 3.7898138898194984E-5 19 0.0 20 2.6528697228736487E-4 21 3.7898138898194984E-5 22 0.0 23 0.0 24 8.337590557602897E-4 25 1.1369441669458496E-4 26 1.8949069449097493E-4 27 6.821665001675097E-4 28 0.0015159255559277995 29 4.1687952788014486E-4 30 0.0010232497502512645 31 4.1687952788014486E-4 32 7.958609168620947E-4 33 1.1369441669458496E-4 34 9.095553335566797E-4 35 1.5159255559277993E-4 36 4.5477766677833986E-4 37 0.0018949069449097494 38 0.0 39 8.337590557602897E-4 40 1.1369441669458496E-4 41 0.0011369441669458495 42 0.004926758056765348 43 0.004168795278801448 44 0.003941406445412279 45 0.002387582750586284 46 0.002728666000670039 47 0.0013643330003350195 48 0.003941406445412279 49 0.003676119473124914 50 0.0017433143893169694 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2638652.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.4018194197887 #Duplication Level Percentage of deduplicated Percentage of total 1 69.80670435397958 33.787714984318974 2 16.551759208114472 16.02270520541963 3 5.984694803828804 8.690103515324086 4 2.7020032543459394 5.231274943541341 5 1.451437134483401 3.512609904122057 6 0.8730574846607971 2.5354542429388105 7 0.5544996444566092 1.8787154161528083 8 0.38311176321931983 1.4834645104750692 9 0.2731500721566148 1.1898864420324051 >10 1.2608155339374043 10.560431231969366 >50 0.08086330489392239 2.6989135341791495 >100 0.06506597957207776 6.4607811127878865 >500 0.008820833026499657 2.9377203271853314 >1k 0.004016629324559356 3.0102246295532153 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2666 0.10103643830258784 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.789813889819499E-5 0.0 3 0.0 0.0 0.0 3.789813889819499E-5 0.0 4 0.0 0.0 0.0 3.789813889819499E-5 0.0 5 0.0 0.0 0.0 3.789813889819499E-5 0.0 6 0.0 0.0 0.0 3.789813889819499E-5 7.579627779638998E-5 7 0.0 0.0 0.0 3.789813889819499E-5 7.579627779638998E-5 8 0.0 0.0 0.0 7.579627779638998E-5 7.579627779638998E-5 9 0.0 0.0 0.0 7.579627779638998E-5 7.579627779638998E-5 10 0.0 0.0 0.0 1.1369441669458496E-4 7.579627779638998E-5 11 0.0 0.0 0.0 1.1369441669458496E-4 7.579627779638998E-5 12 0.0 0.0 0.0 1.1369441669458496E-4 3.4108325008375487E-4 13 0.0 0.0 0.0 1.1369441669458496E-4 4.1687952788014486E-4 14 0.0 0.0 0.0 1.1369441669458496E-4 4.1687952788014486E-4 15 0.0 0.0 0.0 1.1369441669458496E-4 4.5477766677833986E-4 16 0.0 0.0 0.0 1.1369441669458496E-4 4.926758056765349E-4 17 0.0 0.0 0.0 1.1369441669458496E-4 5.684720834729248E-4 18 0.0 0.0 0.0 1.1369441669458496E-4 6.063702223711198E-4 19 0.0 0.0 0.0 1.5159255559277996E-4 6.063702223711198E-4 20 0.0 0.0 0.0 1.8949069449097493E-4 7.579627779638997E-4 21 0.0 0.0 0.0 2.2738883338916993E-4 7.958609168620947E-4 22 0.0 0.0 0.0 3.4108325008375487E-4 7.958609168620947E-4 23 0.0 0.0 0.0 4.5477766677833986E-4 7.958609168620947E-4 24 0.0 0.0 0.0 6.442683612693147E-4 7.958609168620947E-4 25 0.0 0.0 0.0 7.579627779638997E-4 7.958609168620947E-4 26 0.0 0.0 0.0 7.958609168620947E-4 9.095553335566797E-4 27 0.0 0.0 0.0 0.0011369441669458497 0.0010232497502512647 28 0.0 0.0 0.0 0.0018191106671133594 0.0010232497502512647 29 0.0 0.0 0.0 0.002804462278466429 0.0010232497502512647 30 0.0 0.0 0.0 0.004434082251088814 0.0010232497502512647 31 0.0 0.0 0.0 0.010308293780309036 0.0010611478891494597 32 0.0 0.0 0.0 0.016371996004020235 0.0011369441669458497 33 0.0 0.0 0.0 0.021943022422054898 0.0011748423058440447 34 0.0 0.0 0.0 0.029067872534915554 0.0011748423058440447 35 0.0 0.0 0.0 0.03668539845345275 0.0011748423058440447 36 0.0 0.0 0.0 0.04748636803943832 0.0011748423058440447 37 0.0 0.0 0.0 0.06556378029387733 0.0011748423058440447 38 0.0 3.789813889819499E-5 0.0 0.08780998782711778 0.0013643330003350195 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2110 0.0 24.406788 1 GTATCAA 4250 0.0 23.405973 1 TAGGACG 845 0.0 20.827919 4 GTAGGAC 1190 0.0 19.226442 3 TGTAGGA 1305 0.0 19.05117 2 GATATAC 780 0.0 18.339857 1 AACGAAT 545 0.0 17.357723 31 GGACGTG 1025 0.0 16.741074 6 CGCAATA 605 0.0 16.727201 36 AACGCAG 6045 0.0 16.449575 6 CTGTAGG 1345 0.0 16.362698 1 ATCAACG 6050 0.0 16.326893 3 TCAACGC 6090 0.0 16.219656 4 TATGGCG 1200 0.0 16.132957 16 CAACGCA 6190 0.0 15.993166 5 ATACCGT 650 0.0 15.907322 6 GGACCGT 180 5.2768883E-9 15.888519 6 TATCAAC 6250 0.0 15.876334 2 TAGGACC 1740 0.0 15.804231 4 ACCGTCG 615 0.0 15.739471 8 >>END_MODULE