##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062140_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 93953 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.597511521718307 32.0 32.0 32.0 32.0 32.0 2 31.3419156386704 32.0 32.0 32.0 32.0 32.0 3 31.5270294721829 32.0 32.0 32.0 32.0 32.0 4 31.676582972337233 32.0 32.0 32.0 32.0 32.0 5 31.668547039477186 32.0 32.0 32.0 32.0 32.0 6 35.28400370397965 36.0 36.0 36.0 36.0 36.0 7 35.294264153353275 36.0 36.0 36.0 36.0 36.0 8 35.283343799559354 36.0 36.0 36.0 36.0 36.0 9 35.27023086011091 36.0 36.0 36.0 36.0 36.0 10 35.204549083052164 36.0 36.0 36.0 36.0 36.0 11 35.27424350473109 36.0 36.0 36.0 36.0 36.0 12 35.166838738518194 36.0 36.0 36.0 36.0 36.0 13 35.14975572892829 36.0 36.0 36.0 36.0 36.0 14 35.124530350281525 36.0 36.0 36.0 36.0 36.0 15 35.05464434344832 36.0 36.0 36.0 36.0 36.0 16 35.04555469223974 36.0 36.0 36.0 36.0 36.0 17 35.029536044618055 36.0 36.0 36.0 36.0 36.0 18 34.968792907091846 36.0 36.0 36.0 36.0 36.0 19 34.94780368907858 36.0 36.0 36.0 36.0 36.0 20 34.87480974529818 36.0 36.0 36.0 36.0 36.0 21 34.820186689089226 36.0 36.0 36.0 32.0 36.0 22 34.69056868859962 36.0 36.0 36.0 32.0 36.0 23 34.62904856683661 36.0 36.0 36.0 32.0 36.0 24 34.52528391855502 36.0 36.0 36.0 32.0 36.0 25 34.42684108011453 36.0 36.0 36.0 32.0 36.0 26 34.27147616361372 36.0 36.0 36.0 32.0 36.0 27 34.09652698689771 36.0 36.0 36.0 32.0 36.0 28 33.99761582919119 36.0 36.0 36.0 32.0 36.0 29 33.83639692186519 36.0 36.0 36.0 32.0 36.0 30 33.809500494928315 36.0 36.0 36.0 32.0 36.0 31 33.616670037146235 36.0 36.0 36.0 27.0 36.0 32 33.675263163496645 36.0 36.0 36.0 27.0 36.0 33 33.55457515992038 36.0 36.0 36.0 21.0 36.0 34 33.43697380605196 36.0 36.0 36.0 21.0 36.0 35 33.25699019722627 36.0 36.0 36.0 14.0 36.0 36 33.0634359733058 36.0 36.0 36.0 14.0 36.0 37 32.93340287164859 36.0 36.0 36.0 14.0 36.0 38 32.76030568475727 36.0 36.0 36.0 14.0 36.0 39 32.399774355262736 36.0 36.0 36.0 14.0 36.0 40 32.12001745553628 36.0 36.0 36.0 14.0 36.0 41 32.0660649473673 36.0 36.0 36.0 14.0 36.0 42 31.861026257809755 36.0 36.0 36.0 14.0 36.0 43 31.672357455323407 36.0 32.0 36.0 14.0 36.0 44 31.804327695762776 36.0 36.0 36.0 14.0 36.0 45 31.293167860526008 36.0 32.0 36.0 14.0 36.0 46 31.405745425904442 36.0 32.0 36.0 14.0 36.0 47 31.233020765702 36.0 32.0 36.0 14.0 36.0 48 31.1096718572052 36.0 32.0 36.0 14.0 36.0 49 31.194980468957883 36.0 32.0 36.0 14.0 36.0 50 30.743478122039743 36.0 32.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 0.0 19 1.0 20 9.0 21 19.0 22 47.0 23 115.0 24 323.0 25 872.0 26 1576.0 27 2609.0 28 3617.0 29 4150.0 30 4679.0 31 5574.0 32 6680.0 33 7052.0 34 12320.0 35 44309.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.7059199318569 18.357112436115845 12.311541737649064 23.625425894378193 2 12.330093987163249 22.958200725925767 38.3005673290828 26.411137957828185 3 19.594903834896172 30.21510755377689 26.820857237129204 23.36913137419774 4 12.094345044862857 18.19633220865752 32.90368588549594 36.80563686098368 5 11.408895937330367 39.29943695251881 33.42096580204996 15.870701308100859 6 32.00962183219269 32.71210073121667 19.15957978989495 16.118697646695686 7 25.949144785158534 31.84251700318244 22.806083893010335 19.402254318648687 8 29.06772535203772 31.70627867125052 21.412834076612775 17.813161900098986 9 28.7675752770002 14.320990282375229 19.462922950837118 37.44851148978744 10 16.240034911072556 29.223122199397572 31.715857928964482 22.820984960565387 11 32.12244420082382 23.58093940587315 21.446893659595755 22.849722733707278 12 25.337136653433102 26.38553319212798 29.89367023937501 18.383659915063916 13 32.030909071557055 20.693325386097303 24.325992783625853 22.949772758719785 14 24.012006003001503 21.592711249241642 27.322171724159954 27.07311102359691 15 27.984204868391643 24.59314763764861 26.606920481517353 20.81572701244239 16 20.85639475476839 25.635430858310627 31.884366485013626 21.62380790190736 17 23.256309005566614 25.887411791001885 29.84790267474163 21.008376528689876 18 24.556959330729196 22.04932253360723 33.46247591881047 19.931242216853107 19 23.219056336678978 26.996476961885197 31.240088129170967 18.544378572264854 20 23.632280313351497 23.482203678474114 32.79440565395095 20.09111035422343 21 22.128085319255373 25.29136908879972 30.131022958287655 22.449522633657253 22 22.551701382606197 26.650559322214303 26.994348237948763 23.803391057230744 23 19.079752642278585 27.440315902632168 29.741466477919808 23.738464977169436 24 21.084395056997796 29.89111345275729 28.987450905259127 20.037040584985792 25 22.644300873841175 23.518142049748278 27.793684076080595 26.043873000329953 26 21.07649569465584 24.647430098027737 31.249667386884934 23.026406820431493 27 22.848658371739063 25.757559630879268 28.59089119027599 22.80289080710568 28 21.054144093323256 25.619192575010906 30.78986301661469 22.536800315051142 29 22.490207765667574 24.020776566757494 31.86627213896458 21.622743528610357 30 21.772820163487737 26.328337874659404 32.6954189373297 19.20342302452316 31 24.637850840313774 23.552201632731258 28.963417879152342 22.846529647802623 32 18.282740122615802 26.742379087193463 32.10256301089918 22.872317779291553 33 19.900375719774782 28.056581482230474 30.948452949879197 21.094589848115547 34 18.674429495912808 26.916936307901906 31.615080040871934 22.793554155313352 35 19.016955286153713 28.853788596425872 32.649303375091804 19.47995274232861 36 22.162380790190735 26.585916212534062 30.829572547683924 20.42213044959128 37 21.146968664850135 28.08987568119891 30.11218494550409 20.650970708446867 38 22.357987504390493 28.387598054346324 28.707971006779985 20.5464434344832 39 22.430602861035425 25.827018051771116 29.325613079019075 22.41676600817439 40 21.452215469436847 28.441880514725447 29.29337008929997 20.81253392653774 41 20.34847210839462 28.240716102732215 29.3540387214884 22.056773067384754 42 22.797138781853405 29.212526344921553 29.381772507610755 18.60856236561429 43 22.021522315298725 26.969951782349998 28.651715292339457 22.356810610011816 44 20.653539116551357 28.77488025545503 29.54550292708888 21.026077700904736 45 23.485396798365123 27.153227179836513 28.33468153950954 21.02669448228883 46 19.486546321525886 28.473050068119893 30.78486886920981 21.255534741144412 47 22.347343884708312 27.95759581918619 29.483890881611018 20.21116941449448 48 20.89005737155265 29.850237895028155 28.48566775591012 20.774036977509073 49 20.914935286103542 29.82373978201635 29.85141348773842 19.409911444141688 50 20.165616485013622 31.893945844686648 26.671066076294274 21.26937159400545 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 341.0 1 210.5 2 80.0 3 315.0 4 550.0 5 485.0 6 420.0 7 322.0 8 224.0 9 300.0 10 376.0 11 474.5 12 573.0 13 922.5 14 1272.0 15 1486.5 16 1701.0 17 1562.0 18 1423.0 19 1228.0 20 1033.0 21 1015.0 22 997.0 23 991.0 24 985.0 25 913.5 26 842.0 27 952.0 28 1062.0 29 1241.0 30 1420.0 31 1734.5 32 2049.0 33 2514.0 34 2979.0 35 3216.5 36 3454.0 37 3505.5 38 3557.0 39 3719.0 40 3881.0 41 4222.5 42 4564.0 43 5188.5 44 5813.0 45 6513.0 46 7213.0 47 8128.0 48 9043.0 49 8847.0 50 8651.0 51 7408.5 52 6166.0 53 5296.0 54 4426.0 55 4277.0 56 4128.0 57 3900.5 58 3673.0 59 3399.0 60 3125.0 61 2784.0 62 2443.0 63 2091.5 64 1740.0 65 1503.5 66 1267.0 67 1089.0 68 911.0 69 747.5 70 584.0 71 459.5 72 335.0 73 299.0 74 263.0 75 211.0 76 159.0 77 124.0 78 89.0 79 76.5 80 64.0 81 51.5 82 39.0 83 33.0 84 27.0 85 16.5 86 6.0 87 4.0 88 2.0 89 1.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.035123944951199 2 0.004257447872872606 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0010643619682181515 17 0.0 18 0.0 19 0.0 20 0.0010643619682181515 21 0.0 22 0.0 23 0.0 24 0.002128723936436303 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0010643619682181515 30 0.0010643619682181515 31 0.0 32 0.0010643619682181515 33 0.0 34 0.0010643619682181515 35 0.0 36 0.0010643619682181515 37 0.0010643619682181515 38 0.0 39 0.0010643619682181515 40 0.0 41 0.0 42 0.007450533777527061 43 0.004257447872872606 44 0.0031930859046544547 45 0.0010643619682181515 46 0.0010643619682181515 47 0.0 48 0.004257447872872606 49 0.0010643619682181515 50 0.0010643619682181515 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 93953.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 71.72841740018946 #Duplication Level Percentage of deduplicated Percentage of total 1 85.77406478609903 61.52437921088204 2 9.918238340431214 14.22839079114025 3 2.2065260939888116 4.748118740221175 4 0.7820035316288524 2.243675029003864 5 0.37096941728123933 1.3304524602726897 6 0.20180736300099417 0.8685193660660118 7 0.13503286789037114 0.6779985737549626 8 0.0905165378166224 0.519408640490458 9 0.054903473757623424 0.3544325354166445 >10 0.3902598269798638 5.3526763381690845 >50 0.04748408541199864 2.361819207476078 >100 0.02522592037512427 4.368141517567294 >500 0.002967755338249915 1.4219875895394505 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 713 0.7588900833395421 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 623 0.6630975061999085 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 500 0.5321809841090758 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 381 0.40552190989111575 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 346 0.36826924100348046 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 325 0.3459176396708993 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 319 0.3395314678615904 No Hit GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 317 0.33740274392515407 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 271 0.28844209338711907 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 230 0.2448032526901749 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 222 0.23628835694442965 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 219 0.23309527103977523 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 184 0.1958426021521399 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 157 0.1671048290102498 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 144 0.15326812342341384 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 137 0.14581758964588679 No Hit GTACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA 123 0.13091652209083265 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 117 0.12453035028152375 No Hit AAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 112 0.11920854044043297 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTT 100 0.10643619682181517 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 100 0.10643619682181517 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0010643619682181517 2 0.0 0.0 0.0 0.0 0.0010643619682181517 3 0.0 0.0 0.0 0.0 0.0010643619682181517 4 0.0 0.0 0.0 0.0 0.0010643619682181517 5 0.0 0.0 0.0 0.0 0.0010643619682181517 6 0.0 0.0 0.0 0.0 0.0010643619682181517 7 0.0 0.0 0.0 0.0 0.0010643619682181517 8 0.0 0.0 0.0 0.0 0.0010643619682181517 9 0.0 0.0 0.0 0.0 0.0010643619682181517 10 0.0 0.0 0.0 0.0 0.0010643619682181517 11 0.0 0.0 0.0 0.0 0.0010643619682181517 12 0.0 0.0 0.0 0.0 0.0010643619682181517 13 0.0 0.0 0.0 0.0 0.0010643619682181517 14 0.0 0.0 0.0 0.0 0.0010643619682181517 15 0.0 0.0 0.0 0.0 0.0010643619682181517 16 0.0 0.0 0.0 0.0021287239364363034 0.0010643619682181517 17 0.0 0.0 0.0 0.003193085904654455 0.0010643619682181517 18 0.0 0.0 0.0 0.003193085904654455 0.0010643619682181517 19 0.0 0.0 0.0 0.005321809841090758 0.0010643619682181517 20 0.0 0.0 0.0 0.005321809841090758 0.003193085904654455 21 0.0 0.0 0.0 0.008514895745745214 0.003193085904654455 22 0.0 0.0 0.0 0.01277234361861782 0.003193085904654455 23 0.0 0.0 0.0 0.024480325269017486 0.003193085904654455 24 0.0 0.0 0.0 0.03193085904654455 0.003193085904654455 25 0.0 0.0 0.0 0.035123944951199006 0.003193085904654455 26 0.0 0.0 0.0 0.043638840696944216 0.003193085904654455 27 0.0 0.0 0.0 0.05747554628378019 0.003193085904654455 28 0.0 0.0 0.0 0.07769842367992506 0.003193085904654455 29 0.0 0.0 0.0 0.09153512926676104 0.003193085904654455 30 0.0 0.0 0.0 0.12346598831330559 0.003193085904654455 31 0.0 0.0 0.0 0.16604046704203165 0.003193085904654455 32 0.0 0.0 0.0 0.21819420348472107 0.003193085904654455 33 0.0 0.0 0.0 0.27992719764137386 0.003193085904654455 34 0.0 0.0 0.0 0.3256947622747544 0.003193085904654455 35 0.0 0.0 0.0 0.40658627185933394 0.003193085904654455 36 0.0 0.0 0.0 0.4864134194756953 0.003193085904654455 37 0.0 0.0 0.0 0.5917852543292923 0.003193085904654455 38 0.0 0.0 0.0 0.7376028439751791 0.003193085904654455 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATACATG 50 5.8256774E-8 35.21448 1 TTTCTCG 30 0.0057069296 29.345402 41 GTCCTAA 65 5.81289E-7 27.088064 1 TCCTAAA 70 1.1149641E-6 25.139814 2 CCTAAAG 60 2.8478936E-4 21.997341 3 CTAAAGT 60 2.8478936E-4 21.997341 4 AACGCAT 50 0.00256473 21.99734 23 TAAAGTG 55 0.0044565536 19.99758 5 CGTGATT 55 0.0044565536 19.99758 28 GACGTGG 55 0.0044565536 19.99758 7 CCGTGAT 55 0.0044565536 19.99758 27 AAAGTAC 110 1.2364217E-7 19.99758 3 TGTAGGA 90 9.86976E-6 19.55319 2 AAGTACT 125 2.224624E-8 19.357658 4 CTGTAGG 80 8.84863E-5 19.257921 1 AAAAGTA 105 1.7591337E-6 18.854862 2 TGTACAA 95 1.5733573E-5 18.524076 35 CGGCGGC 60 0.0073451363 18.340878 39 CATGGAC 60 0.0073677534 18.331118 33 CGTGGAA 60 0.0073677534 18.331118 9 >>END_MODULE