##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062136_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 203709 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.098208719300573 32.0 32.0 32.0 32.0 32.0 2 31.43903313059315 32.0 32.0 32.0 32.0 32.0 3 31.567245433436913 32.0 32.0 32.0 32.0 32.0 4 31.67459464235748 32.0 32.0 32.0 32.0 32.0 5 31.652877388824255 32.0 32.0 32.0 32.0 32.0 6 35.28500949884394 36.0 36.0 36.0 36.0 36.0 7 35.28273664884713 36.0 36.0 36.0 36.0 36.0 8 35.2366120299054 36.0 36.0 36.0 36.0 36.0 9 35.289368658233066 36.0 36.0 36.0 36.0 36.0 10 35.18901472198087 36.0 36.0 36.0 36.0 36.0 11 35.31345203206535 36.0 36.0 36.0 36.0 36.0 12 35.2444614621838 36.0 36.0 36.0 36.0 36.0 13 35.26997334432941 36.0 36.0 36.0 36.0 36.0 14 35.22141878856604 36.0 36.0 36.0 36.0 36.0 15 35.24259605613891 36.0 36.0 36.0 36.0 36.0 16 35.235055888546896 36.0 36.0 36.0 36.0 36.0 17 35.20308871969329 36.0 36.0 36.0 36.0 36.0 18 35.22054008413963 36.0 36.0 36.0 36.0 36.0 19 35.17528926066104 36.0 36.0 36.0 36.0 36.0 20 35.13363670726379 36.0 36.0 36.0 36.0 36.0 21 35.107467024039195 36.0 36.0 36.0 36.0 36.0 22 35.106804313996925 36.0 36.0 36.0 36.0 36.0 23 35.12713723988631 36.0 36.0 36.0 36.0 36.0 24 35.10140936335655 36.0 36.0 36.0 36.0 36.0 25 35.104487283330634 36.0 36.0 36.0 36.0 36.0 26 35.08654011359341 36.0 36.0 36.0 36.0 36.0 27 35.06111659278677 36.0 36.0 36.0 36.0 36.0 28 35.03839791074523 36.0 36.0 36.0 36.0 36.0 29 34.996990805511786 36.0 36.0 36.0 36.0 36.0 30 34.97330996666814 36.0 36.0 36.0 36.0 36.0 31 34.971503468182554 36.0 36.0 36.0 36.0 36.0 32 34.92214875140519 36.0 36.0 36.0 36.0 36.0 33 34.89195862725751 36.0 36.0 36.0 36.0 36.0 34 34.86944612167356 36.0 36.0 36.0 36.0 36.0 35 34.85762042914157 36.0 36.0 36.0 36.0 36.0 36 34.81773019356042 36.0 36.0 36.0 32.0 36.0 37 34.77371151986412 36.0 36.0 36.0 32.0 36.0 38 34.74390920381525 36.0 36.0 36.0 32.0 36.0 39 34.664668718613314 36.0 36.0 36.0 32.0 36.0 40 34.6582576125748 36.0 36.0 36.0 32.0 36.0 41 34.61224099082515 36.0 36.0 36.0 32.0 36.0 42 34.566783990888965 36.0 36.0 36.0 32.0 36.0 43 34.54706468540909 36.0 36.0 36.0 32.0 36.0 44 34.42227392996873 36.0 36.0 36.0 32.0 36.0 45 34.35299864021717 36.0 36.0 36.0 32.0 36.0 46 34.20385942692763 36.0 36.0 36.0 32.0 36.0 47 34.14224702884998 36.0 36.0 36.0 32.0 36.0 48 34.071479414262505 36.0 36.0 36.0 32.0 36.0 49 34.0124393129415 36.0 36.0 36.0 32.0 36.0 50 33.610139954543 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 0.0 21 7.0 22 18.0 23 39.0 24 122.0 25 278.0 26 579.0 27 1135.0 28 2001.0 29 3125.0 30 4528.0 31 6513.0 32 9476.0 33 15140.0 34 31644.0 35 129102.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.004336147163826 21.838369255096076 13.024646797978756 24.13264779976134 2 14.999729991114252 20.73177317289896 40.25930671536645 24.00919012062033 3 18.05034657450861 25.79967404323836 29.952186462976414 26.197792919276612 4 11.118365503563926 17.37339721562236 38.11779606102853 33.39044121978518 5 12.106976127711588 39.66147789248389 33.71230529824407 14.519240681560461 6 30.05905482821083 39.366940095921144 17.299677481112763 13.274327594755263 7 27.917765047199683 33.4158039163709 19.96769902164362 18.698732014785797 8 26.334624390674932 35.2085573047828 18.690877673544122 19.765940630998138 9 26.07984919664816 14.801015173605487 21.45216951631985 37.666966113426504 10 16.859834371579066 26.97180782390567 30.81061710577343 25.357740698741832 11 33.97689841882293 23.753000603802484 23.58118688914088 18.688914088233705 12 23.95034092749952 26.58989048102931 28.92557520777187 20.534193383699296 13 27.941328070924705 21.750143587175824 27.422941548974272 22.885586792925203 14 21.50175004540791 23.137907505313954 26.877555729005593 28.482786720272546 15 24.55561609943596 29.011972961430278 23.77754542018271 22.654865518951052 16 22.862739130221346 28.36966819991458 25.833672873293505 22.933919796570564 17 20.085514140268717 28.417006612373534 27.969800057925763 23.527679189431982 18 20.485695210791917 26.92285035442889 30.68166198676537 21.909792448013825 19 23.960158854051613 25.96203407802306 28.622692173639848 21.455114894285476 20 23.7549641891129 26.80441217619251 28.424860953615205 21.015762681079384 21 24.125590916454353 24.402456445223333 28.10676013332744 23.36519250499487 22 23.23608677083487 27.006661463165592 28.0159443127206 21.741307453278942 23 22.276875346695533 27.075386949030232 29.155805585418413 21.491932118855818 24 22.872557153166067 27.353011923988866 28.47373924312861 21.300691679716454 25 22.637684147484894 26.986043817406202 29.190168328350737 21.186103706758168 26 20.531059468056906 28.00359341403788 30.159150933207663 21.306196184697555 27 21.16853535452707 28.189369096942684 28.761757024760932 21.880338523769318 28 20.735580722915227 27.59114986033588 29.032463930329943 22.64080548641895 29 21.257983279906924 27.27790404846176 28.516447642938143 22.947665028693173 30 21.668483009827888 26.615318154595347 29.468940531943094 22.247258303633668 31 22.551397097806664 26.35880770514658 28.58356078308167 22.50623441396509 32 20.840021795796947 27.42490513428469 28.73608922531651 22.99898384460186 33 21.26121084488167 28.138177498294137 29.109170434295983 21.491441222528216 34 21.25581098527802 27.20154730522461 30.148888856162465 21.393752853334906 35 22.01473670775469 28.015453416392994 28.194139679641054 21.775670196211262 36 21.0177262663898 27.379251775817465 29.080698447294917 22.52232351049782 37 22.280911893494608 27.077974355449957 26.70145502385768 23.939658727197756 38 22.00835505549583 28.32422720645627 28.26433785448851 21.403079883559393 39 21.526785758115743 27.83725804947253 27.496085101787354 23.13987109062437 40 22.406962873510743 27.889293060198618 28.79892395524989 20.90482011104075 41 22.6037652487666 27.37389852973663 29.1622689673793 20.860067254117475 42 21.579148911101072 29.043850519411663 27.872474127604423 21.50452644188284 43 20.959356697872842 29.115017746773425 28.0320472854555 21.89357826989823 44 21.15716922593567 28.403958685151004 27.974904763774887 22.463967325138437 45 21.597023131602718 28.625849271491973 27.77755959627695 21.999568000628365 46 23.22328857907268 27.896222478584225 26.315505264966493 22.5649836773766 47 23.081907660587614 28.699835546501067 26.07447043518814 22.143786357723176 48 22.062346588119784 29.192439862542958 25.682866961217478 23.062346588119784 49 22.408612919379067 28.110793641442555 26.673343348355864 22.80725009082251 50 21.267414803687668 29.119417199297025 26.55739153485906 23.055776462156246 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 108.0 1 63.0 2 18.0 3 41.0 4 64.0 5 66.5 6 69.0 7 59.0 8 49.0 9 92.0 10 135.0 11 217.0 12 299.0 13 575.0 14 851.0 15 1158.0 16 1465.0 17 1803.0 18 2141.0 19 2231.0 20 2321.0 21 2414.5 22 2508.0 23 2314.0 24 2120.0 25 2583.0 26 3046.0 27 4041.5 28 5037.0 29 5768.0 30 6499.0 31 6756.5 32 7014.0 33 8179.5 34 9345.0 35 10602.0 36 11859.0 37 13536.0 38 15213.0 39 14383.5 40 13554.0 41 13442.5 42 13331.0 43 11877.5 44 10424.0 45 10227.0 46 10030.0 47 9771.5 48 9513.0 49 9239.0 50 8965.0 51 9340.0 52 9715.0 53 9426.0 54 9137.0 55 8915.5 56 8694.0 57 8594.5 58 8495.0 59 7820.0 60 7145.0 61 6508.5 62 5872.0 63 5321.5 64 4771.0 65 4371.5 66 3972.0 67 3537.5 68 3103.0 69 2756.5 70 2410.0 71 2062.0 72 1714.0 73 1424.5 74 1135.0 75 889.0 76 643.0 77 535.5 78 428.0 79 343.0 80 258.0 81 196.0 82 134.0 83 95.0 84 56.0 85 40.5 86 25.0 87 17.5 88 10.0 89 5.0 90 0.0 91 2.5 92 5.0 93 5.5 94 6.0 95 3.0 96 0.0 97 1.0 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03534453558752927 2 0.005890755931254878 3 4.908963276045732E-4 4 4.908963276045732E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 9.817926552091465E-4 17 0.0 18 4.908963276045732E-4 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 9.817926552091465E-4 25 0.0 26 0.0014726889828137195 27 4.908963276045732E-4 28 0.002945377965627439 29 9.817926552091465E-4 30 0.0014726889828137195 31 4.908963276045732E-4 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 4.908963276045732E-4 38 0.0 39 0.0 40 0.0 41 0.001963585310418293 42 0.008345237569277743 43 0.004908963276045732 44 0.002454481638022866 45 0.002454481638022866 46 0.001963585310418293 47 0.001963585310418293 48 0.004418066948441159 49 0.007363444914068598 50 0.0014726889828137195 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 203709.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.44428081233524 #Duplication Level Percentage of deduplicated Percentage of total 1 68.04400410881739 30.24166826207973 2 15.811215304240257 14.05436185931893 3 6.304604747230414 8.406108713900712 4 3.1622430608480507 5.621744743727572 5 1.793741785126523 3.9860781801491343 6 1.09899819963109 2.930651075799302 7 0.7256701679976142 2.257632210653432 8 0.5025569656604483 1.7868626324806465 9 0.37111899002617715 1.4844704946762293 >10 1.9108209903133524 15.835824632195926 >50 0.17340976617294587 5.356660726821103 >100 0.10051139313208965 7.759107354117884 >500 0.0011045208036493366 0.2788291140793976 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCATAGGGTCTTCTCGTCTTATTATTATATTTCAGCCTCTTCACTGAAAG 568 0.2788291140793976 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 398 0.19537673838662012 No Hit GTATTAGAGGCACTGCCTGCCCAGTGACTAAAGTTTAACGGCCGCGGTAT 340 0.16690475138555488 No Hit GTCAGGATACCGCGGCCGTTAAACTTTAGTCACTGGGCAGGCAGTGCCTC 317 0.1556141358506497 No Hit CTGTTAACCCAACACCGGAATGCCTAAAGGAAAGATCCAAAAAGATAAAA 281 0.13794186805688508 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 275 0.13499649009125764 No Hit CCATTGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTAATTGTCGA 270 0.13254200845323477 No Hit ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA 269 0.13205111212563017 No Hit ACCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTAAAGGAAAGATC 268 0.13156021579802563 No Hit CCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTAAAGGAAAGATCC 268 0.13156021579802563 No Hit ATAAATAATCCACCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTA 257 0.1261603561943753 No Hit GTTCATGCTAGTCCCTAATTAAGGAACAAGTGATTATGCTACCTTTGCAC 254 0.12468766721156158 No Hit CTATAGAACTAGTACCGCAAGGGAAAGATGAAAGACTAATTAAAAGTAAG 251 0.12321497822874788 No Hit GCCTAAAGGAAAGATCCAAAAAGATAAAAGGAACTCGGCAAACAAGAACC 250 0.1227240819011433 No Hit GACTATAGGCAATAATCACACTATAAATAATCCACCTATAACTTCTCTGT 248 0.12174228924593415 No Hit CACTATAAATAATCCACCTATAACTTCTCTGTTAACCCAACACCGGAATG 244 0.11977870393551585 No Hit CTCTAATACTTGTAATGCTAGAGGTGATGTTTTTGGTAAACAGGCGGGGT 244 0.11977870393551585 No Hit ATCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGACT 242 0.11879691128030671 No Hit ATCTATAACTTTATAGATGCAACACTGTTAGTATGAGTAACAAGAATTCC 232 0.11388794800426098 No Hit TATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA 229 0.11241525902144725 No Hit CTTCTACACCATTGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTA 225 0.11045167371102897 No Hit GATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAAACTTCTAAC 223 0.10946988105581983 No Hit GGTCAGGATACCGCGGCCGTTAAACTTTAGTCACTGGGCAGGCAGTGCCT 220 0.1079971920730061 No Hit CCTCTAGCATTACAAGTATTAGAGGCACTGCCTGCCCAGTGACTAAAGTT 218 0.10701539941779695 No Hit GTTATATAATTTAAGCTCCATAGGGTCTTCTCGTCTTATTATTATATTTC 214 0.10505181410737865 No Hit CTGTTAGTATGAGTAACAAGAATTCCAATTCTCCAGGCATACGCGTATAA 205 0.10063374715893751 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 0.0 0.0 22 0.0 0.0 0.0 4.908963276045732E-4 0.0 23 0.0 0.0 0.0 0.0014726889828137195 0.0 24 0.0 0.0 0.0 0.001963585310418293 0.0 25 0.0 0.0 0.0 0.002454481638022866 0.0 26 0.0 0.0 0.0 0.0034362742932320125 0.0 27 0.0 0.0 0.0 0.003927170620836586 0.0 28 0.0 0.0 0.0 0.004908963276045732 0.0 29 0.0 0.0 0.0 0.008836133896882318 0.0 30 0.0 0.0 0.0 0.014726889828137196 0.0 31 0.0 0.0 0.0 0.029453779656274392 0.0 32 0.0 0.0 0.0 0.04516246213962073 0.0 33 0.0 0.0 0.0 0.058907559312548784 0.0 34 0.0 0.0 0.0 0.07756161976152257 0.0 35 0.0 0.0 0.0 0.10210643614175122 0.0 36 0.0 0.0 0.0 0.13794186805688508 0.0 37 0.0 0.0 0.0 0.17524998895483263 0.0 38 0.0 0.0 0.0 0.21697617680122136 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGGTTG 25 0.0023490535 35.197445 5 TAAATTC 75 1.8189894E-12 35.197445 16 CTGGACT 25 0.0023490535 35.197445 4 AAATTCA 70 1.02591E-9 31.426294 17 ATTGAAC 70 1.02591E-9 31.426294 8 ATACATG 80 1.2914825E-10 30.247808 1 CACAAAC 30 0.0057291007 29.338408 41 ACATAAA 45 4.048364E-5 29.338408 26 TCTGGAC 30 0.0057359813 29.331207 3 CTGTGCT 30 0.0057359813 29.331207 9 GTCCTAT 40 7.014914E-4 27.498007 1 GTTTCCA 100 6.002665E-11 26.404566 25 GTCCTAC 200 0.0 26.398085 1 ACAATGC 50 8.31215E-5 26.398085 16 TTGGTGT 50 8.31215E-5 26.398085 34 CTAATAC 75 6.9574526E-8 26.398085 3 AATTCAT 85 8.1563485E-9 25.880476 18 ATTCATT 95 9.513315E-10 25.471836 19 AACGAAT 70 1.125265E-6 25.141035 31 AGTGTAT 70 1.125265E-6 25.141035 10 >>END_MODULE