##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062121_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3657829 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.23001075227956 32.0 32.0 32.0 32.0 32.0 2 31.36727304638899 32.0 32.0 32.0 32.0 32.0 3 31.520279925606147 32.0 32.0 32.0 32.0 32.0 4 31.609678855955266 32.0 32.0 32.0 32.0 32.0 5 31.570151857836986 32.0 32.0 32.0 32.0 32.0 6 35.2011400751648 36.0 36.0 36.0 36.0 36.0 7 35.2019279742164 36.0 36.0 36.0 36.0 36.0 8 35.147547083256214 36.0 36.0 36.0 36.0 36.0 9 35.244790010686664 36.0 36.0 36.0 36.0 36.0 10 35.105916378267 36.0 36.0 36.0 36.0 36.0 11 35.24529194776464 36.0 36.0 36.0 36.0 36.0 12 35.155550464496834 36.0 36.0 36.0 36.0 36.0 13 35.198892567148434 36.0 36.0 36.0 36.0 36.0 14 35.156128129554446 36.0 36.0 36.0 36.0 36.0 15 35.13158132870618 36.0 36.0 36.0 36.0 36.0 16 35.147754310001915 36.0 36.0 36.0 36.0 36.0 17 35.12483361031913 36.0 36.0 36.0 36.0 36.0 18 35.12112758688282 36.0 36.0 36.0 36.0 36.0 19 35.11308620495928 36.0 36.0 36.0 36.0 36.0 20 35.111858154112724 36.0 36.0 36.0 36.0 36.0 21 35.10319345163484 36.0 36.0 36.0 36.0 36.0 22 35.08825070827532 36.0 36.0 36.0 36.0 36.0 23 35.051432420706384 36.0 36.0 36.0 36.0 36.0 24 35.03963689937392 36.0 36.0 36.0 36.0 36.0 25 35.01624242139258 36.0 36.0 36.0 36.0 36.0 26 34.973593079392174 36.0 36.0 36.0 36.0 36.0 27 34.96017282382528 36.0 36.0 36.0 36.0 36.0 28 34.93989686231915 36.0 36.0 36.0 32.0 36.0 29 34.9153708388227 36.0 36.0 36.0 32.0 36.0 30 34.894338144292696 36.0 36.0 36.0 32.0 36.0 31 34.894736467997824 36.0 36.0 36.0 32.0 36.0 32 34.867478222738136 36.0 36.0 36.0 32.0 36.0 33 34.846063334289276 36.0 36.0 36.0 32.0 36.0 34 34.83764057860551 36.0 36.0 36.0 32.0 36.0 35 34.821889705615 36.0 36.0 36.0 32.0 36.0 36 34.804630287528475 36.0 36.0 36.0 32.0 36.0 37 34.78587517349772 36.0 36.0 36.0 32.0 36.0 38 34.76594149152407 36.0 36.0 36.0 32.0 36.0 39 34.747625435743444 36.0 36.0 36.0 32.0 36.0 40 34.73958842799923 36.0 36.0 36.0 32.0 36.0 41 34.71030876511723 36.0 36.0 36.0 32.0 36.0 42 34.67945357751825 36.0 36.0 36.0 32.0 36.0 43 34.6800837327278 36.0 36.0 36.0 32.0 36.0 44 34.62103695935485 36.0 36.0 36.0 32.0 36.0 45 34.61456071347239 36.0 36.0 36.0 32.0 36.0 46 34.591471607885445 36.0 36.0 36.0 32.0 36.0 47 34.5677949953374 36.0 36.0 36.0 32.0 36.0 48 34.542754185611194 36.0 36.0 36.0 32.0 36.0 49 34.529149394353865 36.0 36.0 36.0 32.0 36.0 50 34.09775470641192 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 8.0 20 31.0 21 83.0 22 246.0 23 750.0 24 1933.0 25 4452.0 26 9352.0 27 18051.0 28 30896.0 29 49359.0 30 73575.0 31 109441.0 32 167259.0 33 284288.0 34 642051.0 35 2266051.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.069350276653445 17.5508191583708 11.975034600481687 26.404795964494067 2 16.375146917259645 19.43400595624921 36.96535308943861 27.22549403705254 3 19.034288182578692 22.54938734000033 27.950391216626297 30.46593326079468 4 12.828811844402788 15.626263556880323 34.669198587468145 36.87572601124875 5 15.0393621569959 36.29596580265666 32.87355228293949 15.791119757407948 6 36.02621012553095 34.3431598521853 15.923706532546818 13.706923489736928 7 31.726387428171194 29.55105337072892 19.461188590281285 19.261370610818602 8 28.594502367387868 33.239826137307126 18.33579426484945 19.82987723045555 9 27.009737196572065 14.380305913699083 18.14836068061137 40.46159620911748 10 16.369782589380304 26.634325042887507 30.906153246806507 26.089739120925685 11 37.9054898411052 20.78363969447451 21.488319984340436 19.82255048007985 12 24.864229574427892 23.220932416468894 28.264033119098787 23.650804890004427 13 29.90096037841025 19.18832181602803 24.595955688469857 26.31476211709186 14 23.613569688468214 19.29723888131457 24.586879266362644 32.50231216385457 15 25.4189848678 27.13360848743886 21.574354624013313 25.873052020747828 16 26.10001733279458 25.656117355595132 23.311241766239107 24.93262354537119 17 24.445839321630398 25.996048475748868 24.634749191391943 24.92336301122879 18 25.0968538988564 25.047453011062025 25.61060126102122 24.245091829060353 19 25.92054629140572 24.764149653838288 24.815054179693526 24.50024987506247 20 26.020130033807042 24.363240598630114 24.596549090195303 25.020080277367544 21 26.69665531111487 24.16386878664913 24.30518211758942 24.834293784646576 22 26.044000416640582 24.247142225620717 24.707633954457688 25.00122340328102 23 24.832024679119773 24.354090910209308 25.047999783478126 25.765884627192797 24 25.115233578326574 24.706133871071806 24.965826340947043 25.212806209654577 25 25.216925595867046 24.389602443640626 24.909939551443333 25.48353240904899 26 24.905442183379968 25.314566209608742 25.190831138261505 24.58916046874979 27 25.387847451088994 24.648253316117234 24.798096788330305 25.16580244446346 28 25.003355859741195 24.654729192371004 25.177450481589798 25.164464466298007 29 24.863935200677126 24.828285512447863 25.123789714955592 25.18398957191942 30 24.8875001913727 24.94641564400741 25.248511120394205 24.917573044225687 31 25.493566784305266 24.653419953398384 24.50628285262259 25.346730409673757 32 25.242707298729485 24.71602473726701 24.558060977073385 25.483206986930124 33 24.876531683753797 24.49217717324057 25.016915808619395 25.614375334386235 34 25.384288580178566 24.698903547981597 25.046271007857733 24.8705368639821 35 25.651597304295265 24.533772720848134 25.065291639635532 24.749338335221072 36 24.760950772918545 25.053036996859333 24.8719457251087 25.314066505113423 37 25.714056846782267 24.579592658024225 24.697451611121775 25.008898884071733 38 25.05210057659885 24.671464959132862 25.001660821213896 25.274773643054395 39 25.707575991612458 24.478450874226482 24.49209293551734 25.32188019864372 40 25.720879802242973 24.58151326117017 24.962997105928064 24.73460983065879 41 24.9432101668086 24.990315177081214 25.25755341005554 24.808921246054645 42 25.817484600097384 25.074385131667764 24.651408977286803 24.456721290948046 43 25.38695398983506 24.35484885186471 24.998209242495907 25.25998791580432 44 25.012063740292618 24.979447214130364 24.663288363719378 25.345200681857637 45 25.095810475424457 25.04769335836152 24.69187274553536 25.164623420678662 46 24.981525472429826 24.75460933653276 24.737330903052403 25.526534287985008 47 25.24313914825979 24.696277689594403 24.99337029926879 25.067212862877007 48 25.627692277408325 25.085874012079774 24.264589286554006 25.021844423957894 49 25.071992060573667 25.17355875763288 24.437056670936204 25.317392510857246 50 25.265859287728397 25.2783259271653 24.395709726329926 25.060105058776376 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 81.0 1 71.5 2 62.0 3 181.5 4 301.0 5 326.0 6 351.0 7 297.5 8 244.0 9 323.0 10 402.0 11 753.0 12 1104.0 13 2025.0 14 2946.0 15 3868.5 16 4791.0 17 4958.0 18 5125.0 19 5269.5 20 5414.0 21 6475.5 22 7537.0 23 9493.0 24 11449.0 25 14988.5 26 18528.0 27 24087.0 28 29646.0 29 35924.0 30 42202.0 31 49172.5 32 56143.0 33 65267.0 34 74391.0 35 87488.0 36 100585.0 37 115643.0 38 130701.0 39 142043.5 40 153386.0 41 166401.0 42 179416.0 43 187151.5 44 194887.0 45 211512.5 46 228138.0 47 243051.5 48 257965.0 49 271869.0 50 285773.0 51 281515.5 52 277258.0 53 276980.0 54 276702.0 55 276939.0 56 277176.0 57 266057.0 58 254938.0 59 235816.0 60 216694.0 61 191955.0 62 167216.0 63 145436.5 64 123657.0 65 106150.0 66 88643.0 67 76268.5 68 63894.0 69 55304.5 70 46715.0 71 36314.0 72 25913.0 73 22564.0 74 19215.0 75 14572.5 76 9930.0 77 8603.5 78 7277.0 79 6006.5 80 4736.0 81 3699.5 82 2663.0 83 2281.0 84 1899.0 85 1477.5 86 1056.0 87 729.5 88 403.0 89 261.0 90 119.0 91 86.0 92 53.0 93 46.0 94 39.0 95 34.0 96 29.0 97 28.5 98 28.0 99 18.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.029744419435681655 2 0.004319502087167006 3 2.460475872436902E-4 4 0.0 5 2.733862080485446E-5 6 1.640317248291268E-4 7 0.0 8 0.0 9 0.0 10 1.0935448321941785E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 6.287882785116527E-4 17 0.0 18 0.0 19 2.733862080485446E-5 20 3.007248288533991E-4 21 0.0 22 0.0 23 0.0 24 0.001120883452999033 25 2.187089664388357E-4 26 3.827406912679625E-4 27 3.280634496582536E-4 28 0.0013122537986330143 29 3.5540207046310806E-4 30 0.001230237936218451 31 4.374179328776714E-4 32 7.65481382535925E-4 33 2.187089664388357E-4 34 8.474972449504884E-4 35 2.733862080485446E-4 36 1.366931040242723E-4 37 0.0018316875939252489 38 0.0 39 6.561268993165072E-4 40 1.9137034563398124E-4 41 0.0012028993154135964 42 0.004811597261654386 43 0.00434684070797186 44 0.004756920020044676 45 0.002378460010022338 46 0.002460475872436902 47 0.00128491517782816 48 0.003964100016703897 49 0.0036633751878504977 50 0.0018316875939252489 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3657829.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.8748066091174 #Duplication Level Percentage of deduplicated Percentage of total 1 67.71242862055709 31.7400699662228 2 16.698220281167462 15.654516927923334 3 6.574128677223061 9.244830311048512 4 3.1731126903919313 5.94956174844232 5 1.7342514657214467 4.06463510336356 6 1.0062182962596777 2.8299772826236795 7 0.6733177716468245 2.209314823269874 8 0.463997910635935 1.739984986247519 9 0.3389564917210983 1.4299667998498249 >10 1.490986761438297 11.925921282664877 >50 0.06889043934097984 2.2135838336646474 >100 0.05328407072036445 5.064449395298817 >500 0.00792250303991244 2.577718770523594 >1k 0.0042840201361153815 3.355468768856652 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.7338620804854465E-5 2 0.0 0.0 0.0 0.0 2.7338620804854465E-5 3 0.0 0.0 0.0 0.0 2.7338620804854465E-5 4 0.0 0.0 0.0 0.0 2.7338620804854465E-5 5 0.0 0.0 0.0 0.0 2.7338620804854465E-5 6 5.467724160970893E-5 0.0 0.0 0.0 2.7338620804854465E-5 7 1.640317248291268E-4 0.0 0.0 0.0 8.20158624145634E-5 8 1.9137034563398124E-4 0.0 0.0 0.0 8.20158624145634E-5 9 1.9137034563398124E-4 0.0 0.0 0.0 8.20158624145634E-5 10 1.9137034563398124E-4 0.0 0.0 2.7338620804854465E-5 8.20158624145634E-5 11 2.1870896643883572E-4 0.0 0.0 2.7338620804854465E-5 8.20158624145634E-5 12 2.1870896643883572E-4 0.0 0.0 2.7338620804854465E-5 2.460475872436902E-4 13 2.1870896643883572E-4 0.0 0.0 5.467724160970893E-5 2.460475872436902E-4 14 2.733862080485446E-4 0.0 0.0 1.0935448321941786E-4 2.460475872436902E-4 15 2.733862080485446E-4 0.0 0.0 1.9137034563398124E-4 3.007248288533991E-4 16 3.280634496582536E-4 0.0 0.0 3.007248288533991E-4 3.007248288533991E-4 17 3.280634496582536E-4 0.0 0.0 4.1007931207281696E-4 3.007248288533991E-4 18 3.280634496582536E-4 0.0 0.0 6.287882785116527E-4 3.007248288533991E-4 19 3.280634496582536E-4 0.0 0.0 9.295131073650518E-4 3.007248288533991E-4 20 3.280634496582536E-4 0.0 0.0 0.0012849151778281597 4.647565536825259E-4 21 3.280634496582536E-4 0.0 0.0 0.00153096276507185 5.467724160970892E-4 22 3.5540207046310806E-4 0.0 0.0 0.0017496717315106857 5.741110369019437E-4 23 3.5540207046310806E-4 0.0 0.0 0.0022144282851932116 5.741110369019437E-4 24 5.467724160970892E-4 0.0 0.0 0.0027885393220951553 6.014496577067982E-4 25 5.741110369019437E-4 0.0 0.0 0.0037453910502650615 6.014496577067982E-4 26 6.014496577067982E-4 0.0 0.0 0.004510872432800987 6.561268993165072E-4 27 6.014496577067982E-4 0.0 0.0 0.004975628986483512 6.561268993165072E-4 28 6.287882785116527E-4 0.0 0.0 0.006096512439482546 6.561268993165072E-4 29 7.381427617310705E-4 0.0 0.0 0.0073814276173107055 6.561268993165072E-4 30 7.65481382535925E-4 0.0 0.0 0.009869242110552462 6.561268993165072E-4 31 7.65481382535925E-4 0.0 0.0 0.014188744197719467 6.561268993165072E-4 32 7.65481382535925E-4 0.0 0.0 0.020531304224445702 6.561268993165072E-4 33 7.928200033407794E-4 0.0 0.0 0.025944351143806887 6.561268993165072E-4 34 7.928200033407794E-4 0.0 0.0 0.032450942895362246 6.834655201213616E-4 35 9.021744865601974E-4 0.0 0.0 0.040133095341526356 6.834655201213616E-4 36 9.021744865601974E-4 0.0 0.0 0.0498929829688594 6.834655201213616E-4 37 9.021744865601974E-4 0.0 0.0 0.06372632509611575 6.834655201213616E-4 38 9.568517281699062E-4 0.0 0.0 0.08258997345146533 7.381427617310705E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4025 0.0 26.023954 1 GGTATCA 1780 0.0 24.601711 1 CGCAATA 665 0.0 20.180576 36 CAATACG 750 0.0 18.481125 38 CTAGCGG 755 0.0 18.35748 29 AATACGA 745 0.0 18.310091 39 TCTAGCG 765 0.0 17.830175 28 TACCGTC 895 0.0 17.697466 7 ATACCGT 860 0.0 17.650307 6 ACCGTCG 900 0.0 17.354715 8 CGTCGTA 885 0.0 17.151712 10 ATACGAA 810 0.0 17.112621 40 GCGCAAT 785 0.0 17.094713 35 TACGAAT 810 0.0 16.840992 41 ATCAACG 6175 0.0 16.81538 3 TCAACGC 6190 0.0 16.739092 4 AACGCAG 6330 0.0 16.507889 6 CGAATGC 820 0.0 16.367298 43 CCGTCGT 955 0.0 16.355228 9 CAACGCA 6375 0.0 16.25333 5 >>END_MODULE