##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062117_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2259452 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.230928118853598 32.0 32.0 32.0 32.0 32.0 2 31.360613547001662 32.0 32.0 32.0 32.0 32.0 3 31.513572760120596 32.0 32.0 32.0 32.0 32.0 4 31.601954367696237 32.0 32.0 32.0 32.0 32.0 5 31.56549198655249 32.0 32.0 32.0 32.0 32.0 6 35.189885866130375 36.0 36.0 36.0 36.0 36.0 7 35.19309637912202 36.0 36.0 36.0 36.0 36.0 8 35.13614318870239 36.0 36.0 36.0 36.0 36.0 9 35.23999093585524 36.0 36.0 36.0 36.0 36.0 10 35.09570240925676 36.0 36.0 36.0 36.0 36.0 11 35.23923942619715 36.0 36.0 36.0 36.0 36.0 12 35.163219223068246 36.0 36.0 36.0 36.0 36.0 13 35.19303264685419 36.0 36.0 36.0 36.0 36.0 14 35.15756475463962 36.0 36.0 36.0 36.0 36.0 15 35.12866482669249 36.0 36.0 36.0 36.0 36.0 16 35.15030016127805 36.0 36.0 36.0 36.0 36.0 17 35.136746432320756 36.0 36.0 36.0 36.0 36.0 18 35.125516275627895 36.0 36.0 36.0 36.0 36.0 19 35.12130242200321 36.0 36.0 36.0 36.0 36.0 20 35.119513050067006 36.0 36.0 36.0 36.0 36.0 21 35.11248833788016 36.0 36.0 36.0 36.0 36.0 22 35.09189042298752 36.0 36.0 36.0 36.0 36.0 23 35.06331579515741 36.0 36.0 36.0 36.0 36.0 24 35.05080169881901 36.0 36.0 36.0 36.0 36.0 25 35.03808268553614 36.0 36.0 36.0 36.0 36.0 26 34.989364235221636 36.0 36.0 36.0 36.0 36.0 27 34.97908563669421 36.0 36.0 36.0 36.0 36.0 28 34.960744021116625 36.0 36.0 36.0 36.0 36.0 29 34.9524636947366 36.0 36.0 36.0 36.0 36.0 30 34.924394941782346 36.0 36.0 36.0 32.0 36.0 31 34.92175580627515 36.0 36.0 36.0 32.0 36.0 32 34.896816130636985 36.0 36.0 36.0 32.0 36.0 33 34.88167794668796 36.0 36.0 36.0 32.0 36.0 34 34.872741266466385 36.0 36.0 36.0 32.0 36.0 35 34.85674623758327 36.0 36.0 36.0 32.0 36.0 36 34.83221285515249 36.0 36.0 36.0 32.0 36.0 37 34.82224937728263 36.0 36.0 36.0 32.0 36.0 38 34.809035996338935 36.0 36.0 36.0 32.0 36.0 39 34.7951454600496 36.0 36.0 36.0 32.0 36.0 40 34.78426892892613 36.0 36.0 36.0 32.0 36.0 41 34.75556418104921 36.0 36.0 36.0 32.0 36.0 42 34.73662419029039 36.0 36.0 36.0 32.0 36.0 43 34.72599594946031 36.0 36.0 36.0 32.0 36.0 44 34.69900002301443 36.0 36.0 36.0 32.0 36.0 45 34.67944395366664 36.0 36.0 36.0 32.0 36.0 46 34.65930765513053 36.0 36.0 36.0 32.0 36.0 47 34.6325241695774 36.0 36.0 36.0 32.0 36.0 48 34.61188155358025 36.0 36.0 36.0 32.0 36.0 49 34.59164921405721 36.0 36.0 36.0 32.0 36.0 50 34.16052520699709 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 1.0 20 18.0 21 48.0 22 159.0 23 410.0 24 1145.0 25 2602.0 26 5640.0 27 10651.0 28 18198.0 29 29436.0 30 45023.0 31 66751.0 32 101059.0 33 172787.0 34 387565.0 35 1417958.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.96902732245276 17.117008630822596 12.07035703138662 26.843607015338026 2 16.153474025528546 19.078869039056755 37.13089543776471 27.636761497649992 3 18.962623647347808 22.207882449268627 28.19686206820244 30.63263183518113 4 13.089988191827045 15.429582040246927 34.433437842450296 37.04699192547574 5 14.982312074924394 36.073143431745144 33.40032600839761 15.544218484932845 6 36.302849191483936 34.054777981170616 15.765178043486728 13.877194783858712 7 31.43695905024758 29.736590996400896 19.60125729601691 19.22519265733461 8 28.27530746393373 33.844047140634096 18.294568771542835 19.58607662388933 9 26.930689388400374 14.634079413946392 17.945723122243802 40.48950807540944 10 15.739126124387685 27.478742633169457 31.942347082389887 24.839784160052968 11 37.275941245930426 21.14862364856611 21.590456446961475 19.984978658541984 12 24.44359271345119 23.02479673159542 28.937073651962358 23.594536902991038 13 29.96009651897894 19.740892924479034 24.397376000906416 25.901634555635617 14 23.1103825175308 18.75684900586514 25.321449625838476 32.81131885076559 15 25.15459500799309 27.043725646749746 21.903319920051413 25.898359425205758 16 25.669933403881757 26.044716370111015 23.3957425752653 24.889607650741933 17 24.41972655316422 25.92916335465414 25.053242998744828 24.597867093436815 18 24.71257372925877 25.72897197502577 25.329139980588188 24.229314315127272 19 25.549436566670398 25.06909864387411 25.26171180521286 24.11975298424263 20 25.62925962660676 24.81516445881968 25.049071872202017 24.506504042371542 21 25.496359294200538 24.637301434153063 25.126889174897276 24.739450096749124 22 25.407178377765938 24.51886563644636 25.121799445175203 24.952156540612503 23 25.033647554206752 24.627885269474753 25.02488436350246 25.313582812816033 24 24.903969185162104 24.69940440756987 25.24688738005277 25.149739027215258 25 25.09780056606822 24.591481536394998 25.18237885852499 25.12833903901179 26 24.97154162093262 24.86474524660978 25.064352228870874 25.09936090358673 27 24.982739116348977 25.067361704915015 24.934231607422003 25.015667571314005 28 25.23954166978325 24.853159152861863 25.007667900464675 24.89963127689021 29 25.098309801680855 25.10556824061194 24.896489792377665 24.899632165329535 30 25.154231991293347 24.975159565216043 24.972415499369085 24.898192944121526 31 25.038925540022717 24.755050140698458 24.945849461946796 25.26017485733203 32 24.925224503525225 24.99329476903467 25.016840530576296 25.064640196863813 33 25.048352560760467 24.956250337472106 24.986611762352364 25.008785339415063 34 25.200891908734263 24.80353399804552 25.06452972084921 24.931044372371012 35 25.165571413902864 24.962070381792365 25.082498026066546 24.789860178238225 36 25.21056083758733 24.927172284130332 25.020735208073496 24.841531670208838 37 25.358732873301935 24.571492304852903 25.060690595911943 25.009084225933222 38 25.10984964495816 24.902985325645332 25.05886383069877 24.928301198697735 39 25.207507720960205 24.948150731554893 24.852507309352696 24.991834238132206 40 25.311945246876345 24.76637023772589 25.015767104486887 24.90591741091088 41 25.087389606722425 24.943901581909 25.035208119598728 24.93350069176984 42 25.168964525195296 24.847456126762122 24.954787881470335 25.028791466572244 43 25.14359212003801 24.612953011727704 25.09061230415283 25.152842564081457 44 25.02572641435527 24.885199333790986 25.093710538999915 24.995363712853823 45 25.09052202027534 24.9174225843644 25.005145182670578 24.98691021268968 46 25.277640572967286 24.789058668776963 24.880764593723278 25.05253616453247 47 25.15884495068681 25.058465918043265 24.920865207069376 24.86182392420055 48 25.124935103676993 25.010567090958418 24.798074510052125 25.06642329531246 49 25.02963210163523 24.933056678531308 24.94217424826523 25.095136971568234 50 25.07403458502791 25.14458375766846 24.863626324843977 24.917755332459656 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 182.0 1 126.0 2 70.0 3 184.5 4 299.0 5 319.5 6 340.0 7 255.5 8 171.0 9 289.5 10 408.0 11 643.5 12 879.0 13 1668.0 14 2457.0 15 3233.0 16 4009.0 17 3889.0 18 3769.0 19 3906.0 20 4043.0 21 4820.5 22 5598.0 23 7404.5 24 9211.0 25 11475.5 26 13740.0 27 16520.0 28 19300.0 29 22745.0 30 26190.0 31 30558.5 32 34927.0 33 40666.0 34 46405.0 35 53516.0 36 60627.0 37 67114.0 38 73601.0 39 81535.5 40 89470.0 41 98157.5 42 106845.0 43 115749.0 44 124653.0 45 135299.0 46 145945.0 47 153583.5 48 161222.0 49 168419.0 50 175616.0 51 179756.5 52 183897.0 53 183829.0 54 183761.0 55 177904.0 56 172047.0 57 163598.0 58 155149.0 59 144087.0 60 133025.0 61 117568.0 62 102111.0 63 89444.5 64 76778.0 65 65079.5 66 53381.0 67 43658.0 68 33935.0 69 27662.0 70 21389.0 71 17238.5 72 13088.0 73 10902.0 74 8716.0 75 6949.0 76 5182.0 77 4239.5 78 3297.0 79 2639.0 80 1981.0 81 1448.0 82 915.0 83 675.0 84 435.0 85 335.5 86 236.0 87 153.0 88 70.0 89 49.0 90 28.0 91 20.5 92 13.0 93 10.5 94 8.0 95 10.5 96 13.0 97 13.0 98 13.0 99 10.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03040560277447806 2 0.0043815934129160525 3 8.851703864476873E-5 4 0.0 5 4.425851932238437E-5 6 1.7703407728953747E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 4.425851932238437E-5 13 0.0 14 0.0 15 0.0 16 4.86843712546228E-4 17 0.0 18 1.327755579671531E-4 19 4.425851932238437E-5 20 4.86843712546228E-4 21 0.0 22 0.0 23 4.425851932238437E-5 24 9.294289057700716E-4 25 3.0980963525669054E-4 26 5.311022318686124E-4 27 3.5406815457907494E-4 28 0.001460531137638684 29 5.753607511909968E-4 30 0.0013720140989939155 31 4.425851932238436E-4 32 9.73687425092456E-4 33 2.655511159343062E-4 34 0.0012392385410267622 35 1.7703407728953747E-4 36 4.425851932238436E-4 37 0.001814599292217759 38 0.0 39 7.966533478029185E-4 40 4.425851932238437E-5 41 0.001327755579671531 42 0.004514368970883205 43 0.004470110451560821 44 0.004470110451560821 45 0.002522735601375909 46 0.0024784770820535243 47 7.081363091581499E-4 48 0.003496423026468365 49 0.0034521645071459808 50 0.0015490481762834526 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2259452.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.05886334673886 #Duplication Level Percentage of deduplicated Percentage of total 1 67.64805767603974 36.56977105581341 2 16.61472267714103 17.963460454950607 3 6.757485731772466 10.959059932242761 4 3.3093145090187743 7.155911232577044 5 1.751749708005574 4.73487990413815 6 1.047129537682327 3.3963979550341654 7 0.7150260827575678 2.7057448108001743 8 0.4718808454150065 2.040747371058675 9 0.33832599455150714 1.6460566835498496 >10 1.313068732668601 11.155435695353702 >50 0.026227513417543303 0.9285849395071105 >100 0.006599307673588417 0.5685792937361102 >500 3.293470849646702E-4 0.1104746208156759 >1k 8.233677124083279E-5 0.06489605042253183 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 4.425851932238437E-5 0.0 0.0 0.0 0.0 6 4.425851932238437E-5 0.0 0.0 0.0 0.0 7 4.425851932238437E-5 0.0 0.0 0.0 0.0 8 4.425851932238437E-5 0.0 0.0 0.0 0.0 9 4.425851932238437E-5 0.0 0.0 0.0 0.0 10 4.425851932238437E-5 0.0 0.0 0.0 0.0 11 4.425851932238437E-5 0.0 0.0 0.0 0.0 12 4.425851932238437E-5 0.0 0.0 0.0 0.0 13 4.425851932238437E-5 0.0 0.0 0.0 0.0 14 8.851703864476873E-5 0.0 0.0 0.0 0.0 15 8.851703864476873E-5 0.0 0.0 0.0 4.425851932238437E-5 16 8.851703864476873E-5 0.0 0.0 1.327755579671531E-4 4.425851932238437E-5 17 8.851703864476873E-5 0.0 0.0 1.7703407728953747E-4 4.425851932238437E-5 18 8.851703864476873E-5 0.0 0.0 2.2129259661192183E-4 4.425851932238437E-5 19 1.327755579671531E-4 0.0 0.0 3.5406815457907494E-4 4.425851932238437E-5 20 1.327755579671531E-4 0.0 0.0 5.753607511909968E-4 4.425851932238437E-5 21 1.327755579671531E-4 0.0 0.0 6.196192705133811E-4 8.851703864476873E-5 22 1.327755579671531E-4 0.0 0.0 7.966533478029185E-4 8.851703864476873E-5 23 1.327755579671531E-4 0.0 0.0 0.0010179459444148405 8.851703864476873E-5 24 2.2129259661192183E-4 0.0 0.0 0.0013720140989939152 8.851703864476873E-5 25 2.2129259661192183E-4 0.0 0.0 0.001947374850184912 8.851703864476873E-5 26 2.2129259661192183E-4 0.0 0.0 0.0022571844854416025 8.851703864476873E-5 27 2.2129259661192183E-4 0.0 0.0 0.0024784770820535243 8.851703864476873E-5 28 2.655511159343062E-4 0.0 0.0 0.003275130429856443 8.851703864476873E-5 29 2.655511159343062E-4 0.0 0.0 0.004647144528850358 8.851703864476873E-5 30 2.655511159343062E-4 0.0 0.0 0.006860070494969577 8.851703864476873E-5 31 2.655511159343062E-4 0.0 0.0 0.011285922427208014 8.851703864476873E-5 32 2.655511159343062E-4 0.0 0.0 0.01633139362995983 8.851703864476873E-5 33 2.655511159343062E-4 0.0 0.0 0.02190796706458026 8.851703864476873E-5 34 2.655511159343062E-4 0.0 0.0 0.02779435013445738 8.851703864476873E-5 35 3.5406815457907494E-4 0.0 0.0 0.034079059878235965 8.851703864476873E-5 36 3.5406815457907494E-4 0.0 0.0 0.043417607455259064 8.851703864476873E-5 37 3.5406815457907494E-4 0.0 0.0 0.057713109196389216 8.851703864476873E-5 38 3.5406815457907494E-4 4.425851932238437E-5 0.0 0.07625742879246826 8.851703864476873E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2015 0.0 25.663286 1 GGTATCA 890 0.0 22.499395 1 TCAACGC 2790 0.0 18.372381 4 ATCAACG 2860 0.0 17.846182 3 CAACGCA 2875 0.0 17.829197 5 TATCAAC 2920 0.0 17.781242 2 AACGCAG 3080 0.0 16.856794 6 TAGTACC 180 5.2750693E-9 15.88856 4 ATAGTAC 220 3.0559022E-10 15.000022 3 GTATAGA 345 0.0 14.669936 1 GTAGGAC 375 0.0 14.666689 3 GTAATAC 300 0.0 14.666688 3 ACGCAGA 3635 0.0 14.101498 7 CGCAGAG 3720 0.0 13.779286 8 GTATTAC 260 2.564775E-10 13.541478 1 GTCCTAA 230 9.129508E-9 13.394288 1 TATACTG 445 0.0 13.34804 5 AGAGTAC 3900 0.0 13.256137 11 TAACGCA 100 0.0087647755 13.199728 4 TAGTACT 255 2.7921487E-9 12.940909 4 >>END_MODULE