##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062116_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2003377 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.284235568243023 32.0 32.0 32.0 32.0 32.0 2 31.437507768133507 32.0 32.0 32.0 32.0 32.0 3 31.565587505496968 32.0 32.0 32.0 32.0 32.0 4 31.643911755001678 32.0 32.0 32.0 32.0 32.0 5 31.61139615758791 32.0 32.0 32.0 32.0 32.0 6 35.26702263228539 36.0 36.0 36.0 36.0 36.0 7 35.274042279610875 36.0 36.0 36.0 36.0 36.0 8 35.21403510173073 36.0 36.0 36.0 36.0 36.0 9 35.30752125036875 36.0 36.0 36.0 36.0 36.0 10 35.18500861295702 36.0 36.0 36.0 36.0 36.0 11 35.30952586557598 36.0 36.0 36.0 36.0 36.0 12 35.23791478089246 36.0 36.0 36.0 36.0 36.0 13 35.26298894316946 36.0 36.0 36.0 36.0 36.0 14 35.230818263362316 36.0 36.0 36.0 36.0 36.0 15 35.206798820192105 36.0 36.0 36.0 36.0 36.0 16 35.21865979293962 36.0 36.0 36.0 36.0 36.0 17 35.2072835018072 36.0 36.0 36.0 36.0 36.0 18 35.20024987808086 36.0 36.0 36.0 36.0 36.0 19 35.18773101617918 36.0 36.0 36.0 36.0 36.0 20 35.187514381966054 36.0 36.0 36.0 36.0 36.0 21 35.17925832232276 36.0 36.0 36.0 36.0 36.0 22 35.16011913883408 36.0 36.0 36.0 36.0 36.0 23 35.131678660581606 36.0 36.0 36.0 36.0 36.0 24 35.1195241834163 36.0 36.0 36.0 36.0 36.0 25 35.10719899449779 36.0 36.0 36.0 36.0 36.0 26 35.06160497999129 36.0 36.0 36.0 36.0 36.0 27 35.046177529241874 36.0 36.0 36.0 36.0 36.0 28 35.028888721393926 36.0 36.0 36.0 36.0 36.0 29 35.009714097745956 36.0 36.0 36.0 36.0 36.0 30 34.984819632051284 36.0 36.0 36.0 36.0 36.0 31 34.985388671228634 36.0 36.0 36.0 36.0 36.0 32 34.96079569646652 36.0 36.0 36.0 36.0 36.0 33 34.94515510560419 36.0 36.0 36.0 36.0 36.0 34 34.93601753439318 36.0 36.0 36.0 36.0 36.0 35 34.91498454858971 36.0 36.0 36.0 36.0 36.0 36 34.892103183774196 36.0 36.0 36.0 32.0 36.0 37 34.881403749768516 36.0 36.0 36.0 32.0 36.0 38 34.87562700380408 36.0 36.0 36.0 32.0 36.0 39 34.84339043525008 36.0 36.0 36.0 32.0 36.0 40 34.834607764789155 36.0 36.0 36.0 32.0 36.0 41 34.807782559148876 36.0 36.0 36.0 32.0 36.0 42 34.79103783261962 36.0 36.0 36.0 32.0 36.0 43 34.769800691532346 36.0 36.0 36.0 32.0 36.0 44 34.733583843679945 36.0 36.0 36.0 32.0 36.0 45 34.71505163531377 36.0 36.0 36.0 32.0 36.0 46 34.693002864663015 36.0 36.0 36.0 32.0 36.0 47 34.664790501238656 36.0 36.0 36.0 32.0 36.0 48 34.64803629072311 36.0 36.0 36.0 32.0 36.0 49 34.622456981386925 36.0 36.0 36.0 32.0 36.0 50 34.211473427118314 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 24.0 21 46.0 22 142.0 23 393.0 24 915.0 25 2155.0 26 4571.0 27 8354.0 28 15279.0 29 24369.0 30 36494.0 31 55340.0 32 84238.0 33 143249.0 34 326064.0 35 1301742.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.87958243019157 17.505845767604335 12.097181298936302 26.51739050326779 2 16.33596718180543 18.945039607563398 37.4441103810303 27.274882829600873 3 19.174681075048007 22.06326237127322 27.909658270984256 30.85239828269452 4 13.072227543792305 15.192197973721372 34.09083762067749 37.64473686180884 5 15.122365885202834 35.98384128399198 32.99069521113599 15.903097619669188 6 36.348629861423774 33.845702300219536 15.664723611267792 14.1409442270889 7 31.671772212618993 29.501836149661298 19.246552196616015 19.579839441103697 8 28.398748712798437 33.78924685668249 18.121352096984243 19.69065233353483 9 26.765606273806675 14.690844509046475 18.27189790039518 40.271651316751665 10 16.6174081237911 26.954564172958133 30.853884070630812 25.574143632619954 11 37.36885269222917 21.229903308264 21.304427474209795 20.096816525297037 12 24.55364117687285 23.17696569342665 28.441376735382306 23.828016394318194 13 30.06433636804256 19.503817803638558 24.413927084118466 26.01791874420042 14 23.310939478690234 19.00166568748668 24.885530781275815 32.80186405254727 15 25.396018822218686 27.015983511840258 21.778676704384647 25.809320961556416 16 25.957818737976414 25.744925759501314 23.176383205364605 25.120872297157664 17 24.32138334422328 25.93665595641759 24.940737564622136 24.801223134736997 18 24.824608473201472 25.304398826979472 25.513146565171276 24.357846134647783 19 25.828065140076124 24.81232919448431 25.04313970175329 24.31646596368628 20 26.04924399923928 24.358793253970433 24.921894147414534 24.670068599375753 21 26.02821437413646 24.29134620760157 24.672303152278953 25.008136265983023 22 25.865825553552824 24.3104518021321 24.899956423578786 24.923766220736287 23 24.927372595059538 24.413140618635744 25.236151376476506 25.423335409828212 24 24.918361907081824 24.498715653848496 25.262884143291696 25.32003829577798 25 25.26934588284153 24.299281411540143 25.205503521063488 25.22586918455484 26 24.93332461466045 24.95738415853742 25.157048423076596 24.952242803725536 27 25.071891470709062 24.85221130227262 25.007449957995714 25.0684472690226 28 25.168854752716573 24.58503236330764 24.984413599427757 25.261699284548023 29 24.81821852910625 25.008198697492773 24.96701802515465 25.20656474824633 30 25.024234358979992 24.731575148476008 25.073302072424543 25.170888420119457 31 25.251926260030626 24.601669991075013 24.83517723189595 25.31122651699841 32 25.22509751147326 24.75049342253042 24.86295482475888 25.161454241237447 33 24.918836841085927 24.732101676573297 25.015523826827966 25.333537655512806 34 25.237638623570334 24.67093982749954 25.09238243608104 24.999039112849083 35 25.24959181299919 24.70545894894156 25.298060119668296 24.746889118390953 36 25.02328571699543 24.82806505425347 25.024234117044546 25.12441511170655 37 25.455650879554824 24.622543418675683 24.969413625125604 24.95239207664389 38 24.912335521471995 24.887477494250955 25.014463079090955 25.18572390518609 39 25.48422472879272 24.48709840532666 24.81330087448218 25.215375991398435 40 25.50122942595841 24.682011446689433 24.854071181916108 24.96268794543605 41 25.068310443386444 24.89774647915446 25.144432786217514 24.88951029124159 42 25.40969244800129 24.81930802173046 24.98773256339257 24.783266966875676 43 25.171593415205646 24.55405679280301 25.088379968471735 25.185969823519606 44 24.928966353113598 24.806616761744262 25.061399427737367 25.20301745740477 45 25.219983068242176 24.882246412983143 24.79973404361525 25.098036475159436 46 25.262425954424817 24.784371198511277 24.758464294645858 25.194738552418052 47 25.215599968652707 24.833392650258588 25.053023341251684 24.897984039837016 48 25.14214061013389 25.259197583185326 24.651549594718308 24.947112211962473 49 25.1921200216642 24.743062089896444 24.69938426749796 25.365433620941396 50 25.128185929497736 25.27943334631166 24.608853215130733 24.98352750905987 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 78.0 1 80.0 2 82.0 3 178.0 4 274.0 5 297.0 6 320.0 7 252.0 8 184.0 9 278.0 10 372.0 11 621.0 12 870.0 13 1661.5 14 2453.0 15 3113.0 16 3773.0 17 3722.5 18 3672.0 19 3655.0 20 3638.0 21 4161.5 22 4685.0 23 5808.5 24 6932.0 25 8767.0 26 10602.0 27 13034.5 28 15467.0 29 18781.0 30 22095.0 31 26017.0 32 29939.0 33 35160.5 34 40382.0 35 46769.5 36 53157.0 37 59395.0 38 65633.0 39 73248.0 40 80863.0 41 88337.0 42 95811.0 43 102194.5 44 108578.0 45 117271.0 46 125964.0 47 132204.5 48 138445.0 49 144532.5 50 150620.0 51 154161.0 52 157702.0 53 159672.0 54 161642.0 55 159535.0 56 157428.0 57 149534.0 58 141640.0 59 131705.5 60 121771.0 61 108503.5 62 95236.0 63 82319.5 64 69403.0 65 58830.0 66 48257.0 67 40219.0 68 32181.0 69 26714.0 70 21247.0 71 16763.5 72 12280.0 73 10329.0 74 8378.0 75 6381.0 76 4384.0 77 3630.5 78 2877.0 79 2402.0 80 1927.0 81 1506.0 82 1085.0 83 791.0 84 497.0 85 402.5 86 308.0 87 218.0 88 128.0 89 91.0 90 54.0 91 38.0 92 22.0 93 17.0 94 12.0 95 11.5 96 11.0 97 10.0 98 9.0 99 9.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.032245553383112614 2 0.004891740296509344 3 2.9949430386791903E-4 4 0.0 5 0.0 6 1.4974715193395951E-4 7 0.0 8 0.0 9 0.0 10 9.983143462263966E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0011480614981603562 17 0.0 18 9.983143462263966E-5 19 9.983143462263966E-5 20 2.9949430386791903E-4 21 4.991571731131983E-5 22 0.0 23 4.991571731131983E-5 24 0.0011480614981603562 25 2.4957858655659916E-4 26 6.988200423584777E-4 27 4.991571731131983E-4 28 0.0013976400847169554 29 4.991571731131983E-4 30 0.0011480614981603562 31 6.489043250471579E-4 32 0.0011480614981603562 33 2.4957858655659916E-4 34 9.983143462263967E-4 35 2.9949430386791903E-4 36 1.4974715193395951E-4 37 0.0016971343885848747 38 0.0 39 9.983143462263967E-4 40 1.4974715193395951E-4 41 0.0011480614981603562 42 0.005291066034999903 43 0.0047419931445753846 44 0.005041487448443304 45 0.0020465444097641132 46 0.002495785865565992 47 6.988200423584777E-4 48 0.003943341667594267 49 0.0035939316464150286 50 0.001846881540518834 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2003377.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.02814693457146 #Duplication Level Percentage of deduplicated Percentage of total 1 63.84843203743418 29.388250113610198 2 17.304643408708166 15.930013389327657 3 7.381245435603702 10.192351484103062 4 3.7821980121623833 6.963502633578171 5 2.15138281089183 4.951208206612026 6 1.3621445563497083 3.7618193871474617 7 0.9090260453360673 2.9288549067456646 8 0.6463511485184439 2.380027650826876 9 0.4562369365437697 1.8899766676993848 >10 2.0409353162264705 15.719960113510318 >50 0.08098398524080036 2.563816758126439 >100 0.03456748974548751 2.7309388561957393 >500 0.0017438279896921573 0.5278939961139691 >1k 1.0898924935575888E-4 0.07138583640313342 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4974715193395951E-4 2 0.0 0.0 0.0 0.0 1.4974715193395951E-4 3 0.0 0.0 0.0 0.0 1.4974715193395951E-4 4 0.0 0.0 0.0 0.0 1.4974715193395951E-4 5 0.0 0.0 0.0 0.0 1.9966286924527935E-4 6 0.0 0.0 0.0 0.0 2.9949430386791903E-4 7 0.0 0.0 0.0 0.0 2.9949430386791903E-4 8 0.0 0.0 0.0 0.0 2.9949430386791903E-4 9 0.0 0.0 0.0 0.0 2.9949430386791903E-4 10 0.0 0.0 0.0 0.0 3.4941002117923884E-4 11 0.0 0.0 0.0 0.0 3.4941002117923884E-4 12 0.0 0.0 0.0 0.0 7.986514769811174E-4 13 0.0 0.0 0.0 0.0 0.0012978086500943157 14 0.0 0.0 0.0 0.0 0.0012978086500943157 15 0.0 0.0 0.0 4.991571731131984E-5 0.0016472186712735545 16 0.0 0.0 0.0 4.991571731131984E-5 0.0016971343885848744 17 0.0 0.0 0.0 4.991571731131984E-5 0.0017470501058961944 18 0.0 0.0 0.0 1.4974715193395951E-4 0.0017470501058961944 19 0.0 0.0 0.0 3.4941002117923884E-4 0.0017470501058961944 20 0.0 0.0 0.0 4.492414558018785E-4 0.0019467129751414736 21 0.0 0.0 0.0 5.490728904245182E-4 0.0019966286924527933 22 0.0 0.0 0.0 7.986514769811174E-4 0.002096460127075433 23 0.0 0.0 0.0 9.983143462263967E-4 0.002096460127075433 24 0.0 0.0 0.0 0.0013477243674056357 0.002096460127075433 25 0.0 0.0 0.0 0.0016472186712735545 0.002096460127075433 26 0.0 0.0 0.0 0.0019467129751414736 0.0022961229963207124 27 0.0 0.0 0.0 0.002196291561698073 0.0023460387136320323 28 0.0 0.0 0.0 0.0025956173001886315 0.0023460387136320323 29 0.0 0.0 0.0 0.003444184494481069 0.0023460387136320323 30 0.0 0.0 0.0 0.0054408131869338626 0.0023460387136320323 31 0.0 0.0 0.0 0.00918449198528285 0.002445870148254672 32 0.0 0.0 0.0 0.014974715193395952 0.0026455330174999514 33 0.0 0.0 0.0 0.019816539772593976 0.002745364452122591 34 0.0 0.0 0.0 0.026006088719197636 0.0028451958867452306 35 0.0 0.0 0.0 0.03289445770815977 0.0028451958867452306 36 0.0 0.0 0.0 0.04287760117042374 0.0028451958867452306 37 0.0 0.0 0.0 0.055406446215565015 0.0028451958867452306 38 0.0 0.0 0.0 0.07242770581872508 0.0031946059079244696 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 965 0.0 26.458805 1 GTATCAA 2280 0.0 25.486406 1 TATGCCG 155 7.221388E-10 18.450693 5 GTAGGAC 615 0.0 16.812168 3 TATCAAC 3415 0.0 16.750887 2 TCAACGC 3455 0.0 16.427544 4 TAGGACC 750 0.0 16.425846 4 ATCAACG 3445 0.0 16.411373 3 CCGTCGT 270 0.0 16.295485 9 CGTCGTA 275 0.0 15.9996 10 CAACGCA 3580 0.0 15.792507 5 ACCGTCG 295 0.0 15.660234 8 AACGCAG 3670 0.0 15.5850525 6 TTACGGT 85 0.0029818474 15.528636 4 ATACGAA 200 1.2769306E-9 15.400384 40 ATACCGT 245 5.456968E-12 15.2645445 6 GTCCTAT 365 0.0 15.076018 1 GATTTCG 190 1.0770236E-8 15.053007 41 TGTAGGA 820 0.0 14.757203 2 CGTATAT 120 1.18188436E-4 14.666301 10 >>END_MODULE