FastQCFastQC Report
Thu 2 Feb 2017
SRR4062105_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062105_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4095
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGGACGCTCTCCTGAGCTACAGAAGGAATGGTTTGATGGGTAAAA471.1477411477411479No Hit
CCCTTGGGCCGCGTCTCCTTCGAGTTGCTTGCAGACAAAGTTCCAAAGAC370.9035409035409037No Hit
GTCTTGGCAGTGCAGATAAAAAACTGGGAACCGTTTGTGTTTGGTCCAGC360.8791208791208791No Hit
CCATAATGGCACTGGCGGCAGGTCCATCTACGGAGAGAAATTTGAGGATG320.7814407814407814No Hit
GTACATGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAG310.757020757020757No Hit
TTACAGGACATTGCGAGCAGATGGGGTAGGGACGCTCTCCTGAGCTACAG280.6837606837606838No Hit
TCTTTCACCTTCCCAAAGACCACATGCTTGCCATCCAGCCATTCAGTCTT270.6593406593406593No Hit
GTCCACAGTCGGAAATGGTGATCTTCTTGCTGGTCTTGCCATTCCTGGAC260.6349206349206349No Hit
CCCAAAGACCACATGCTTGCCATCCAGCCATTCAGTCTTGGCAGTGCAGA260.6349206349206349No Hit
ACCCCACCGTGTTCTTCGACATCACGGCCGATGACGAGCCCTTGGGCCGC250.6105006105006106No Hit
GCATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCAAACACAA230.5616605616605617No Hit
ATCATAAACTTAACTTTGCAATCCAGCTAGACTTGAAGGGGAATGAGGAA230.5616605616605617No Hit
ACTGTGGACAGCTCTAATTTCTTTTGACTTGCGGGCATTTTACCCATCAA210.5128205128205128No Hit
TATCAACGCAGAGTACATGGGGCTTTGCAGACGCCACTGTCGCTTTTCGC200.4884004884004884No Hit
GATTACAGGACATTGCGAGCAGATGGGGTAGGGACGCTCTCCTGAGCTAC200.4884004884004884No Hit
GCCAAGACTGAATGGCTGGATGGCAAGCATGTGGTCTTTGGGAAGGTGAA190.463980463980464No Hit
CCATTATGGCGTGTAAAGTCACCACCCTGGCACATGAATCCTGGAATAAT190.463980463980464No Hit
CTTATAGCCAAATCCTTTCTCTCCAGTGCTCAGAGCTCGAAAGTTTTCTG180.43956043956043955No Hit
CTCCTGAGCTACAGAAGGAATGGTTTGATGGGTAAAATGCCCGCAAGTCA180.43956043956043955No Hit
GTATCAACGCAGAGTACATGGGGCTTTGCAGACGCCACTGTCGCTTTTCG180.43956043956043955No Hit
TGCCATTCCTGGACCCAAAACGCTCCATGGCTTCCACAATGTTCATGCCT170.41514041514041516No Hit
GGCTATAAGGGTTCCTCCTTTCACAGAATTATTCCAGGATTCATGTGCCA170.41514041514041516No Hit
CTGCCAAGACTGAATGGCTGGATGGCAAGCATGTGGTCTTTGGGAAGGTG160.3907203907203907No Hit
AATTAGAGCTGTCCACAGTCGGAAATGGTGATCTTCTTGCTGGTCTTGCC160.3907203907203907No Hit
TTCCTGGACCCAAAACGCTCCATGGCTTCCACAATGTTCATGCCTTCTTT160.3907203907203907No Hit
CTCCATGGCTTCCACAATGTTCATGCCTTCTTTCACCTTCCCAAAGACCA160.3907203907203907No Hit
GGCAAATGCTGGACCAAACACAAACGGTTCCCAGTTTTTTATCTGCACTG150.3663003663003663No Hit
GTTCCAAAGACAGCAGAAAACTTTCGAGCTCTGAGCACTGGAGAGAAAGG150.3663003663003663No Hit
GTCGGAAATGGTGATCTTCTTGCTGGTCTTGCCATTCCTGGACCCAAAAC150.3663003663003663No Hit
AAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCAAACA140.3418803418803419No Hit
TTCTTTCACCTTCCCAAAGACCACATGCTTGCCATCCAGCCATTCAGTCT140.3418803418803419No Hit
GTCACCACCCTGGCACATGAATCCTGGAATAATTCTGTGAAAGGAGGAAC130.31746031746031744No Hit
GAATTATTCCAGGATTCATGTGCCAGGGTGGTGACTTTACACGCCATAAT130.31746031746031744No Hit
GGTGAAAGAAGGCATGAACATTGTGGAAGCCATGGAGCGTTTTGGGTCCA130.31746031746031744No Hit
GGAATGGTTTGATGGGTAAAATGCCCGCAAGTCAAAAGAAATTAGAGCTG130.31746031746031744No Hit
GCCATGGTCAACCCCACCGTGTTCTTCGACATCACGGCCGATGACGAGCC130.31746031746031744No Hit
ACCCAAAACGCTCCATGGCTTCCACAATGTTCATGCCTTCTTTCACCTTC130.31746031746031744No Hit
ACGCAGAGTACATGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTT120.29304029304029305No Hit
GCTATAAGGGTTCCTCCTTTCACAGAATTATTCCAGGATTCATGTGCCAG120.29304029304029305No Hit
GAGCAGAGATTACAGGACATTGCGAGCAGATGGGGTAGGGACGCTCTCCT120.29304029304029305No Hit
GTTTTTTATCTGCACTGCCAAGACTGAATGGCTGGATGGCAAGCATGTGG120.29304029304029305No Hit
GACCACATGCTTGCCATCCAGCCATTCAGTCTTGGCAGTGCAGATAAAAA120.29304029304029305No Hit
AAACTTAACTTTGCAATCCAGCTAGACTTGAAGGGGAATGAGGAAAATAT120.29304029304029305No Hit
ACATTGTGGAAGCCATGGAGCGTTTTGGGTCCAGGAATGGCAAGACCAGC120.29304029304029305No Hit
GGCATGAACATTGTGGAAGCCATGGAGCGTTTTGGGTCCAGGAATGGCAA120.29304029304029305No Hit
GTCTTTGGGAAGGTGAAAGAAGGCATGAACATTGTGGAAGCCATGGAGCG120.29304029304029305No Hit
CCGTAGATGGACCTGCCGCCAGTGCCATTATGGCGTGTAAAGTCACCACC110.2686202686202686No Hit
GGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCAAACACAAACGGTTC110.2686202686202686No Hit
CCTGTATGCTTTAGGATGAAGTTCTCATCCTCAAATTTCTCTCCGTAGAT110.2686202686202686No Hit
ACTGGGAACCGTTTGTGTTTGGTCCAGCATTTGCCATGGACAAGATGCCA110.2686202686202686No Hit
CCTTCGAGTTGCTTGCAGACAAAGTTCCAAAGACAGCAGAAAACTTTCGA110.2686202686202686No Hit
ATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCAAACACAAAC110.2686202686202686No Hit
CACAAACGGTTCCCAGTTTTTTATCTGCACTGCCAAGACTGAATGGCTGG110.2686202686202686No Hit
GTGTAAAGTCACCACCCTGGCACATGAATCCTGGAATAATTCTGTGAAAG110.2686202686202686No Hit
GCTCTAATTTCTTTTGACTTGCGGGCATTTTACCCATCAAACCATTCCTT110.2686202686202686No Hit
GTGGAAGCCATGGAGCGTTTTGGGTCCAGGAATGGCAAGACCAGCAAGAA110.2686202686202686No Hit
GCTCAGAGCTCGAAAGTTTTCTGCTGTCTTTGGAACTTTGTCTGCAAGCA110.2686202686202686No Hit
CCCTTATAGCCAAATCCTTTCTCTCCAGTGCTCAGAGCTCGAAAGTTTTC110.2686202686202686No Hit
GTATGCTTTAGGATGAAGTTCTCATCCTCAAATTTCTCTCCGTAGATGGA100.2442002442002442No Hit
GTTCTCATCCTCAAATTTCTCTCCGTAGATGGACCTGCCGCCAGTGCCAT100.2442002442002442No Hit
TGCCAGGGTGGTGACTTTACACGCCATAATGGCACTGGCGGCAGGTCCAT100.2442002442002442No Hit
GTGCCAGGGTGGTGACTTTACACGCCATAATGGCACTGGCGGCAGGTCCA100.2442002442002442No Hit
TAATGGCACTGGCGGCAGGTCCATCTACGGAGAGAAATTTGAGGATGAGA100.2442002442002442No Hit
CCACAATGTTCATGCCTTCTTTCACCTTCCCAAAGACCACATGCTTGCCA100.2442002442002442No Hit
GCCATGGACAAGATGCCAGGACCTGTATGCTTTAGGATGAAGTTCTCATC100.2442002442002442No Hit
GCACTGCCAAGACTGAATGGCTGGATGGCAAGCATGTGGTCTTTGGGAAG100.2442002442002442No Hit
AGATGGACCTGCCGCCAGTGCCATTATGGCGTGTAAAGTCACCACCCTGG90.21978021978021978No Hit
TCCCTACCCCATCTGCTCGCAATGTCCTGTAATCTCTGCTCTCACTGAAG90.21978021978021978No Hit
GTGAAAGGAGGAACCCTTATAGCCAAATCCTTTCTCTCCAGTGCTCAGAG90.21978021978021978No Hit
CATCTACGGAGAGAAATTTGAGGATGAGAACTTCATCCTAAAGCATACAG90.21978021978021978No Hit
GACCTGTATGCTTTAGGATGAAGTTCTCATCCTCAAATTTCTCTCCGTAG90.21978021978021978No Hit
CTTTAGGATGAAGTTCTCATCCTCAAATTTCTCTCCGTAGATGGACCTGC90.21978021978021978No Hit
GATAAAAAACTGGGAACCGTTTGTGTTTGGTCCAGCATTTGCCATGGACA90.21978021978021978No Hit
GGCTTCCACAATGTTCATGCCTTCTTTCACCTTCCCAAAGACCACATGCT90.21978021978021978No Hit
GTTCATGCCTTCTTTCACCTTCCCAAAGACCACATGCTTGCCATCCAGCC90.21978021978021978No Hit
TCCTTTCACAGAATTATTCCAGGATTCATGTGCCAGGGTGGTGACTTTAC90.21978021978021978No Hit
CGCCATAATGGCACTGGCGGCAGGTCCATCTACGGAGAGAAATTTGAGGA90.21978021978021978No Hit
GCCGATGACGAGCCCTTGGGCCGCGTCTCCTTCGAGTTGCTTGCAGACAA90.21978021978021978No Hit
GGAAAATATGGAACCCAAAGAACTTCAGTGAGAGCAGAGATTACAGGACA90.21978021978021978No Hit
TCCTAAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCA90.21978021978021978No Hit
GTCCAGCATTTGCCATGGACAAGATGCCAGGACCTGTATGCTTTAGGATG90.21978021978021978No Hit
GCTCTGAGCACTGGAGAGAAAGGATTTGGCTATAAGGGTTCCTCCTTTCA80.19536019536019536No Hit
GCCATGGAGCGTTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCAC80.19536019536019536No Hit
CCCTGGCACATGAATCCTGGAATAATTCTGTGAAAGGAGGAACCCTTATA80.19536019536019536No Hit
GAAGGAATGGTTTGATGGGTAAAATGCCCGCAAGTCAAAAGAAATTAGAG80.19536019536019536No Hit
ACTTTACACGCCATAATGGCACTGGCGGCAGGTCCATCTACGGAGAGAAA80.19536019536019536No Hit
GTCCAGGAATGGCAAGACCAGCAAGAAGATCACCATTTCCGACTGTGGAC80.19536019536019536No Hit
GAACTTCAGTGAGAGCAGAGATTACAGGACATTGCGAGCAGATGGGGTAG80.19536019536019536No Hit
CTTCGACATCACGGCCGATGACGAGCCCTTGGGCCGCGTCTCCTTCGAGT80.19536019536019536No Hit
GCACTGGAGAGAAAGGATTTGGCTATAAGGGTTCCTCCTTTCACAGAATT80.19536019536019536No Hit
CTTTACACGCCATAATGGCACTGGCGGCAGGTCCATCTACGGAGAGAAAT80.19536019536019536No Hit
ATGCTGGACCAAACACAAACGGTTCCCAGTTTTTTATCTGCACTGCCAAG80.19536019536019536No Hit
GCATTTGCCATGGACAAGATGCCAGGACCTGTATGCTTTAGGATGAAGTT70.17094017094017094No Hit
GGACAAGATGCCAGGACCTGTATGCTTTAGGATGAAGTTCTCATCCTCAA70.17094017094017094No Hit
GTCCATCTACGGAGAGAAATTTGAGGATGAGAACTTCATCCTAAAGCATA70.17094017094017094No Hit
GAATAATTCTGTGAAAGGAGGAACCCTTATAGCCAAATCCTTTCTCTCCA70.17094017094017094No Hit
GAGTACATGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGC70.17094017094017094No Hit
GGTCAACCCCACCGTGTTCTTCGACATCACGGCCGATGACGAGCCCTTGG70.17094017094017094No Hit
GTTCCCAGTTTTTTATCTGCACTGCCAAGACTGAATGGCTGGATGGCAAG70.17094017094017094No Hit
TTCGAGCTCTGAGCACTGGAGAGAAAGGATTTGGCTATAAGGGTTCCTCC70.17094017094017094No Hit
CTTGAAGGGGAATGAGGAAAATATGGAACCCAAAGAACTTCAGTGAGAGC70.17094017094017094No Hit
ATCTTGTCCATGGCAAATGCTGGACCAAACACAAACGGTTCCCAGTTTTT70.17094017094017094No Hit
GTGCCATTATGGCGTGTAAAGTCACCACCCTGGCACATGAATCCTGGAAT70.17094017094017094No Hit
GCCCAAGGGCTCGTCATCGGCCGTGATGTCGAAGAACACGGTGGGGTTGA70.17094017094017094No Hit
GTGTTCTTCGACATCACGGCCGATGACGAGCCCTTGGGCCGCGTCTCCTT70.17094017094017094No Hit
GATGGGGTAGGGACGCTCTCCTGAGCTACAGAAGGAATGGTTTGATGGGT70.17094017094017094No Hit
ATCCAGCTAGACTTGAAGGGGAATGAGGAAAATATGGAACCCAAAGAACT70.17094017094017094No Hit
CTATAAGGGTTCCTCCTTTCACAGAATTATTCCAGGATTCATGTGCCAGG70.17094017094017094No Hit
CCATCCAGCCATTCAGTCTTGGCAGTGCAGATAAAAAACTGGGAACCGTT70.17094017094017094No Hit
ACAGAAGGAATGGTTTGATGGGTAAAATGCCCGCAAGTCAAAAGAAATTA70.17094017094017094No Hit
CTGCAGCCATGGTCAACCCCACCGTGTTCTTCGACATCACGGCCGATGAC70.17094017094017094No Hit
GCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCCATGGTCAACCCC70.17094017094017094No Hit
CGTCTCCTTCGAGTTGCTTGCAGACAAAGTTCCAAAGACAGCAGAAAACT60.14652014652014653No Hit
GTCAACCCCACCGTGTTCTTCGACATCACGGCCGATGACGAGCCCTTGGG60.14652014652014653No Hit
CCGTTTGTGTTTGGTCCAGCATTTGCCATGGACAAGATGCCAGGACCTGT60.14652014652014653No Hit
ATCCTAAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACC60.14652014652014653No Hit
ATGTTCATGCCTTCTTTCACCTTCCCAAAGACCACATGCTTGCCATCCAG60.14652014652014653No Hit
GGAGAGAAAGGATTTGGCTATAAGGGTTCCTCCTTTCACAGAATTATTCC60.14652014652014653No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.14652014652014653No Hit
ATATGGAACCCAAAGAACTTCAGTGAGAGCAGAGATTACAGGACATTGCG60.14652014652014653No Hit
ATTTCCGACTGTGGACAGCTCTAATTTCTTTTGACTTGCGGGCATTTTAC60.14652014652014653No Hit
AGTCAAAAGAAATTAGAGCTGTCCACAGTCGGAAATGGTGATCTTCTTGC60.14652014652014653No Hit
CCCAAAGAACTTCAGTGAGAGCAGAGATTACAGGACATTGCGAGCAGATG60.14652014652014653No Hit
TATCTGCACTGCCAAGACTGAATGGCTGGATGGCAAGCATGTGGTCTTTG60.14652014652014653No Hit
GGAATGGCAAGACCAGCAAGAAGATCACCATTTCCGACTGTGGACAGCTC60.14652014652014653No Hit
GCCAGGACCTGTATGCTTTAGGATGAAGTTCTCATCCTCAAATTTCTCTC60.14652014652014653No Hit
CATGTGGTCTTTGGGAAGGTGAAAGAAGGCATGAACATTGTGGAAGCCAT60.14652014652014653No Hit
ATTCCAGGATTCATGTGCCAGGGTGGTGACTTTACACGCCATAATGGCAC60.14652014652014653No Hit
GCTTTAGGATGAAGTTCTCATCCTCAAATTTCTCTCCGTAGATGGACCTG50.1221001221001221No Hit
GGTGGTGACTTTACACGCCATAATGGCACTGGCGGCAGGTCCATCTACGG50.1221001221001221No Hit
CTTGCAGACAAAGTTCCAAAGACAGCAGAAAACTTTCGAGCTCTGAGCAC50.1221001221001221No Hit
CAACCCCACCGTGTTCTTCGACATCACGGCCGATGACGAGCCCTTGGGCC50.1221001221001221No Hit
CATCACGGCCGATGACGAGCCCTTGGGCCGCGTCTCCTTCGAGTTGCTTG50.1221001221001221No Hit
GGTATCAACGCAGAGTACATGGGGCTTTGCAGACGCCACTGTCGCTTTTC50.1221001221001221No Hit
GTCTTTGGAACTTTGTCTGCAAGCAACTCGAAGGAGACGCGGCCCAAGGG50.1221001221001221No Hit
AGCTAGACTTGAAGGGGAATGAGGAAAATATGGAACCCAAAGAACTTCAG50.1221001221001221No Hit
GGAATAATTCTGTGAAAGGAGGAACCCTTATAGCCAAATCCTTTCTCTCC50.1221001221001221No Hit
GACGAGCCCTTGGGCCGCGTCTCCTTCGAGTTGCTTGCAGACAAAGTTCC50.1221001221001221No Hit
TCTCTCCAGTGCTCAGAGCTCGAAAGTTTTCTGCTGTCTTTGGAACTTTG50.1221001221001221No Hit
GTGAAAGAAGGCATGAACATTGTGGAAGCCATGGAGCGTTTTGGGTCCAG50.1221001221001221No Hit
TCTTCTTGCTGGTCTTGCCATTCCTGGACCCAAAACGCTCCATGGCTTCC50.1221001221001221No Hit
AGCATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCAAACACA50.1221001221001221No Hit
GCAGAAAACTTTCGAGCTCTGAGCACTGGAGAGAAAGGATTTGGCTATAA50.1221001221001221No Hit
TCATAAACTTAACTTTGCAATCCAGCTAGACTTGAAGGGGAATGAGGAAA50.1221001221001221No Hit
ATTATGGCGTGTAAAGTCACCACCCTGGCACATGAATCCTGGAATAATTC50.1221001221001221No Hit
TTGTGGAAGCCATGGAGCGTTTTGGGTCCAGGAATGGCAAGACCAGCAAG50.1221001221001221No Hit
GGTAAAATGCCCGCAAGTCAAAAGAAATTAGAGCTGTCCACAGTCGGAAA50.1221001221001221No Hit
CTTCCACAATGTTCATGCCTTCTTTCACCTTCCCAAAGACCACATGCTTG50.1221001221001221No Hit
CAGTCGGAAATGGTGATCTTCTTGCTGGTCTTGCCATTCCTGGACCCAAA50.1221001221001221No Hit
CTTTGGAACTTTGTCTGCAAGCAACTCGAAGGAGACGCGGCCCAAGGGCT50.1221001221001221No Hit
CCATGGAGCGTTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACC50.1221001221001221No Hit
CGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCCATGGTCAACCCCACCGT50.1221001221001221No Hit
TGGCAGTGCAGATAAAAAACTGGGAACCGTTTGTGTTTGGTCCAGCATTT50.1221001221001221No Hit
TCCACAATGTTCATGCCTTCTTTCACCTTCCCAAAGACCACATGCTTGCC50.1221001221001221No Hit
AGTGAGAGCAGAGATTACAGGACATTGCGAGCAGATGGGGTAGGGACGCT50.1221001221001221No Hit
TTCGAGTTGCTTGCAGACAAAGTTCCAAAGACAGCAGAAAACTTTCGAGC50.1221001221001221No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers