FastQCFastQC Report
Thu 2 Feb 2017
SRR4062102_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062102_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1546745
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA10200.024.383121
GTATCAA18400.023.0860961
GTAGGAC8850.022.3717293
TAGGACG6400.022.34264
TGTAGGA9200.019.8474462
AGGACGT7550.019.5221755
CTGTAGG11350.018.2281671
AGCGTAT2300.018.172988
TAGGACC9700.018.1433964
TGTACCG1951.8189894E-1218.0503545
GGACGTG7500.017.8924146
CGTATAT2350.017.7863210
ATAGCGT2350.017.786326
GATATAC2850.017.7620871
GTCCTAA4000.017.6076341
CGTCGTA3250.017.59909410
ATACCGT3250.017.5990946
GTCCTAC7450.017.4303761
TAGCGTA2400.017.415777
AATAGCG2550.017.2540155
Produced by FastQC (version 0.11.5)