##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062090_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 969474 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.274889269851485 32.0 32.0 32.0 32.0 32.0 2 31.485027963617384 32.0 32.0 32.0 32.0 32.0 3 31.60249062893899 32.0 32.0 32.0 32.0 32.0 4 31.675781918854966 32.0 32.0 32.0 32.0 32.0 5 31.65230527069318 32.0 32.0 32.0 32.0 32.0 6 35.31539473982799 36.0 36.0 36.0 36.0 36.0 7 35.32010554176801 36.0 36.0 36.0 36.0 36.0 8 35.27107792473032 36.0 36.0 36.0 36.0 36.0 9 35.34546774849042 36.0 36.0 36.0 36.0 36.0 10 35.229406874243146 36.0 36.0 36.0 36.0 36.0 11 35.34346769485308 36.0 36.0 36.0 36.0 36.0 12 35.26677456022544 36.0 36.0 36.0 36.0 36.0 13 35.296529870837176 36.0 36.0 36.0 36.0 36.0 14 35.26642901202095 36.0 36.0 36.0 36.0 36.0 15 35.24886484836107 36.0 36.0 36.0 36.0 36.0 16 35.253476627532045 36.0 36.0 36.0 36.0 36.0 17 35.24014362427461 36.0 36.0 36.0 36.0 36.0 18 35.23232907741724 36.0 36.0 36.0 36.0 36.0 19 35.21350753088788 36.0 36.0 36.0 36.0 36.0 20 35.20936610986989 36.0 36.0 36.0 36.0 36.0 21 35.19096541010899 36.0 36.0 36.0 36.0 36.0 22 35.17766850890276 36.0 36.0 36.0 36.0 36.0 23 35.15230320771882 36.0 36.0 36.0 36.0 36.0 24 35.13405001062432 36.0 36.0 36.0 36.0 36.0 25 35.10784404739065 36.0 36.0 36.0 36.0 36.0 26 35.07886750959799 36.0 36.0 36.0 36.0 36.0 27 35.06002017588919 36.0 36.0 36.0 36.0 36.0 28 35.03291166137514 36.0 36.0 36.0 36.0 36.0 29 35.00244875055958 36.0 36.0 36.0 36.0 36.0 30 34.9757600513268 36.0 36.0 36.0 36.0 36.0 31 34.971396860565626 36.0 36.0 36.0 36.0 36.0 32 34.953465487470524 36.0 36.0 36.0 36.0 36.0 33 34.924895355625836 36.0 36.0 36.0 36.0 36.0 34 34.910810398215936 36.0 36.0 36.0 36.0 36.0 35 34.88675921169624 36.0 36.0 36.0 36.0 36.0 36 34.87554178864003 36.0 36.0 36.0 32.0 36.0 37 34.83816585076031 36.0 36.0 36.0 32.0 36.0 38 34.81056222240101 36.0 36.0 36.0 32.0 36.0 39 34.76831766504311 36.0 36.0 36.0 32.0 36.0 40 34.770504417859584 36.0 36.0 36.0 32.0 36.0 41 34.73833336427795 36.0 36.0 36.0 32.0 36.0 42 34.71272566360727 36.0 36.0 36.0 32.0 36.0 43 34.706639889259534 36.0 36.0 36.0 32.0 36.0 44 34.634322323239196 36.0 36.0 36.0 32.0 36.0 45 34.627155550329356 36.0 36.0 36.0 32.0 36.0 46 34.56114862286147 36.0 36.0 36.0 32.0 36.0 47 34.541480225359315 36.0 36.0 36.0 32.0 36.0 48 34.50869027947114 36.0 36.0 36.0 32.0 36.0 49 34.48189946300778 36.0 36.0 36.0 32.0 36.0 50 34.093396006494245 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 2.0 20 9.0 21 25.0 22 80.0 23 183.0 24 448.0 25 1135.0 26 2417.0 27 4524.0 28 7726.0 29 12437.0 30 18110.0 31 27110.0 32 40244.0 33 68545.0 34 156261.0 35 630216.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.42095895315639 18.46576574996311 12.309203527587263 25.804071769293234 2 15.58260033566428 20.120566812561314 38.21693567603755 26.079897175736853 3 18.69285549247425 23.605942203591233 28.85859519408503 28.84260710984948 4 12.341640931061585 16.239940421300624 35.8414975543439 35.57692109329389 5 14.346233111976185 37.029873931637155 33.22564607199368 15.39824688439298 6 34.445998551792 35.499043811386386 16.626954410329724 13.428003226491892 7 30.141808857174095 30.388437441334165 20.411274567445854 19.058479134045886 8 27.592694595213484 34.43568368001617 19.11242591343347 18.859195811336868 9 27.1791713857205 14.068144168899838 18.959146918844652 39.793537526535005 10 16.764761097254798 27.047244175707654 30.82609745078259 25.361897276254957 11 37.333646905435316 20.91123640242028 22.528401999434745 19.226714692709653 12 24.680084251872664 23.516669864276917 29.24379612037043 22.559449763479993 13 29.768719945042367 19.646839420139166 25.13259767667828 25.451842958140187 14 23.165861075180974 20.371149716237877 25.067923430643834 31.395065777937315 15 24.807885513175183 28.56662478828726 21.91074747749811 24.71474222103945 16 25.01266157040607 25.897166386960286 24.92776973786681 24.162402304766836 17 23.40248423371849 26.534698197166712 25.655045932124015 24.40777163699078 18 24.16080522264204 25.274195927469723 27.474571183666143 23.090427666222094 19 25.73086023967636 24.720415400516156 25.378401071096285 24.1703232887112 20 25.69001334744408 24.894014692503358 25.25854226106115 24.15742969899141 21 26.470491153947716 24.283630677317134 24.6640439331925 24.581834235542647 22 25.76025762423747 25.102684548528376 25.288661686646574 23.848396140587578 23 24.04004645818248 24.913612948877432 26.046185869863454 25.00015472307664 24 24.83145325664491 25.057041829299486 26.10060817111311 24.010896742942492 25 24.63265973434942 24.79470720569714 26.141217511854425 24.43141554809901 26 23.696010281938428 26.164892667826756 26.610188897610747 23.52890815262407 27 24.533223857596273 25.23567024835245 25.90603722243826 24.325068671613018 28 23.853505319999382 25.510828248861472 26.003269878436853 24.63239655270229 29 24.08263930865033 24.980143707979444 25.782750503885644 25.154466479484583 30 23.76052259967136 25.314066269813846 26.39105647364876 24.534354656866032 31 25.089894849329426 24.79849731707971 25.423996303119452 24.687611530471415 32 24.548178634607748 25.306638197356275 25.33706735158051 24.808115816455466 33 23.976581042651095 25.02323432057277 26.221207235698646 24.778977401077494 34 24.722811034952265 25.380493364897134 26.358145987735504 23.538549612415093 35 25.013950907247356 25.16650833289495 26.253905480411483 23.565635279446216 36 23.520377113268072 25.71281215509505 26.008643898212426 24.75816683342445 37 24.61674619531245 25.518896047498508 25.418943702795982 24.445414054393055 38 24.29430804745666 25.419454260764084 25.559942814350872 24.72629487742838 39 25.32832440059909 24.568423093903046 25.33832988814484 24.764922617353022 40 25.804198978002507 25.006859389730927 25.694448742307685 23.494492889958885 41 24.322305934000642 25.05683552973602 26.65204690426875 23.968811631994587 42 25.309903395346677 25.975356271565843 25.730363157161797 22.984377175925687 43 24.458523693746756 25.07114983706971 26.053889232159417 24.416437237024116 44 23.81595370475434 25.859628854068884 25.502511785275882 24.821905655900892 45 24.13840766203692 26.066501281647938 25.453476437792368 24.341614618522776 46 24.0813690934841 25.222108413042736 25.53929562776765 25.15722686570551 47 24.910001258435123 25.16736155666362 25.74314720183855 24.1794899830627 48 25.12378382392989 25.680604725241174 24.641955289282798 24.55365616154614 49 24.62741376464763 25.979431424327448 24.89756973097871 24.49558508004621 50 24.648335518396305 26.51236099234523 24.483192206803576 24.35611128245489 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 484.0 1 267.5 2 51.0 3 164.0 4 277.0 5 280.0 6 283.0 7 212.5 8 142.0 9 206.0 10 270.0 11 427.5 12 585.0 13 1108.5 14 1632.0 15 2113.5 16 2595.0 17 2624.0 18 2653.0 19 2637.5 20 2622.0 21 3009.5 22 3397.0 23 3751.5 24 4106.0 25 5285.5 26 6465.0 27 8899.0 28 11333.0 29 13476.0 30 15619.0 31 17808.0 32 19997.0 33 23716.0 34 27435.0 35 31823.5 36 36212.0 37 39834.5 38 43457.0 39 44419.5 40 45382.0 41 46880.5 42 48379.0 43 49463.0 44 50547.0 45 54798.5 46 59050.0 47 62826.0 48 66602.0 49 69285.0 50 71968.0 51 69249.0 52 66530.0 53 65850.5 54 65171.0 55 66856.5 56 68542.0 57 66426.5 58 64311.0 59 58388.5 60 52466.0 61 45923.5 62 39381.0 63 33649.0 64 27917.0 65 23603.0 66 19289.0 67 16732.5 68 14176.0 69 12756.0 70 11336.0 71 8856.0 72 6376.0 73 5787.5 74 5199.0 75 3727.5 76 2256.0 77 2024.0 78 1792.0 79 1522.5 80 1253.0 81 1016.5 82 780.0 83 707.0 84 634.0 85 475.0 86 316.0 87 212.0 88 108.0 89 73.0 90 38.0 91 28.0 92 18.0 93 16.0 94 14.0 95 14.0 96 14.0 97 12.0 98 10.0 99 7.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.032285548658344626 2 0.005466882041189346 3 2.0629743551657908E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 5.157435887914477E-4 17 0.0 18 3.0944615327486866E-4 19 0.0 20 0.0 21 2.0629743551657908E-4 22 0.0 23 0.0 24 0.0010314871775828954 25 5.157435887914477E-4 26 7.220410243080268E-4 27 5.157435887914477E-4 28 0.0019598256374075015 29 8.251897420663163E-4 30 0.001340933330857764 31 8.251897420663163E-4 32 9.28338459824606E-4 33 3.0944615327486866E-4 34 9.28338459824606E-4 35 3.0944615327486866E-4 36 4.1259487103315816E-4 37 0.0012377846130994746 38 0.0 39 6.188923065497373E-4 40 0.0 41 0.0010314871775828954 42 0.006085774347739084 43 0.004229097428089871 44 0.00453854358136474 45 0.0019598256374075015 46 0.0015472307663743435 47 0.0016503794841326326 48 0.004332246145848161 49 0.0035070564037818445 50 0.001340933330857764 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 969474.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.42405727237303 #Duplication Level Percentage of deduplicated Percentage of total 1 75.66273341252266 41.178729366274254 2 14.821843462243637 16.13329714942591 3 4.581292534508842 7.479975818388125 4 1.8411055912827219 4.0080174457782825 5 0.8835523731841242 2.4043252480656943 6 0.5046117409981492 1.6477810975437082 7 0.31658494531112624 1.206088603662867 8 0.22340692890050834 0.9726969194820988 9 0.16604005486030124 0.8132916109702496 >10 0.8157657800574425 8.363128488510494 >50 0.09448912171179932 3.608782231253242 >100 0.08000237190162687 8.775802418368603 >500 0.007238309681173548 2.5861004879813927 >1k 0.0013333728360056538 0.8219831142950558 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1250 0.12893589719786194 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1223 0.1261508818183881 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1197 0.12346901515667258 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 1098 0.11325729209860193 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 1078 0.11119431774343613 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1056 0.10892504595275378 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1027 0.10593373313776337 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0314871775828955E-4 2 0.0 0.0 0.0 0.0 1.0314871775828955E-4 3 0.0 0.0 0.0 0.0 1.0314871775828955E-4 4 0.0 0.0 0.0 0.0 1.0314871775828955E-4 5 0.0 0.0 0.0 0.0 1.0314871775828955E-4 6 0.0 0.0 0.0 0.0 1.0314871775828955E-4 7 0.0 0.0 0.0 0.0 1.0314871775828955E-4 8 0.0 0.0 0.0 0.0 1.0314871775828955E-4 9 0.0 0.0 0.0 0.0 1.0314871775828955E-4 10 0.0 0.0 0.0 0.0 2.062974355165791E-4 11 0.0 0.0 0.0 0.0 2.062974355165791E-4 12 0.0 0.0 0.0 0.0 5.157435887914477E-4 13 0.0 0.0 0.0 0.0 6.188923065497373E-4 14 0.0 0.0 0.0 0.0 6.188923065497373E-4 15 0.0 0.0 0.0 0.0 7.220410243080268E-4 16 0.0 0.0 0.0 0.0 7.220410243080268E-4 17 0.0 0.0 0.0 1.0314871775828955E-4 7.220410243080268E-4 18 0.0 0.0 0.0 2.062974355165791E-4 7.220410243080268E-4 19 0.0 0.0 0.0 2.062974355165791E-4 7.220410243080268E-4 20 0.0 0.0 0.0 4.125948710331582E-4 7.220410243080268E-4 21 0.0 0.0 0.0 7.220410243080268E-4 7.220410243080268E-4 22 0.0 0.0 0.0 8.251897420663164E-4 7.220410243080268E-4 23 0.0 0.0 0.0 0.0014440820486160536 7.220410243080268E-4 24 0.0 0.0 0.0 0.0019598256374075015 7.220410243080268E-4 25 0.0 0.0 0.0 0.0025787179439572387 7.220410243080268E-4 26 0.0 0.0 0.0 0.0036102051215401343 7.220410243080268E-4 27 0.0 0.0 0.0 0.0046416922991230295 7.220410243080268E-4 28 0.0 0.0 0.0 0.006085774347739084 7.220410243080268E-4 29 0.0 0.0 0.0 0.008458194856179742 7.220410243080268E-4 30 0.0 0.0 0.0 0.014234523050643957 7.220410243080268E-4 31 0.0 0.0 0.0 0.02238327175354883 7.220410243080268E-4 32 0.0 0.0 0.0 0.03280129224713608 7.220410243080268E-4 33 0.0 0.0 0.0 0.039712256336941476 7.220410243080268E-4 34 0.0 0.0 0.0 0.0493050870884624 7.220410243080268E-4 35 0.0 0.0 0.0 0.061167189630665704 7.220410243080268E-4 36 0.0 0.0 0.0 0.07736153831871716 7.220410243080268E-4 37 0.0 0.0 0.0 0.09778498443485849 7.220410243080268E-4 38 0.0 0.0 0.0 0.12377846130994746 7.220410243080268E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGTATCG 30 0.0057460056 29.331717 8 CGTACTC 30 0.0057460056 29.331717 3 GTATCAA 1610 0.0 25.154446 1 GTAGGAC 785 0.0 22.138906 3 GTATAGG 140 7.2759576E-12 22.01014 1 GGTTTCG 70 3.214593E-5 21.999922 24 GATATAC 475 0.0 20.851711 1 TGTAGGA 840 0.0 20.691471 2 CTGTAGG 840 0.0 20.437988 1 GTCCTAC 845 0.0 20.31705 1 GATTTCG 315 0.0 20.257032 41 TTAACGG 55 0.0044830735 19.99993 35 ATTTCGT 315 0.0 19.558514 42 TATACTG 125 2.2879249E-8 19.358934 5 TACTAGA 70 8.113483E-4 18.859995 42 TAGGACC 785 0.0 18.776035 4 GGTATCA 790 0.0 18.666828 1 CGTCGTA 275 0.0 18.398985 10 GGTATAG 60 0.007391397 18.341784 1 CCTACAG 960 0.0 18.332323 3 >>END_MODULE