##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062089_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 361069 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.242405191251535 32.0 32.0 32.0 32.0 32.0 2 31.560255795983593 32.0 32.0 32.0 32.0 32.0 3 31.628716394927284 32.0 32.0 32.0 32.0 32.0 4 31.66028930758387 32.0 32.0 32.0 32.0 32.0 5 31.668140992441888 32.0 32.0 32.0 32.0 32.0 6 35.3060938490981 36.0 36.0 36.0 36.0 36.0 7 35.301078187271685 36.0 36.0 36.0 36.0 36.0 8 35.254405667614776 36.0 36.0 36.0 36.0 36.0 9 35.36507426558359 36.0 36.0 36.0 36.0 36.0 10 35.252525140624094 36.0 36.0 36.0 36.0 36.0 11 35.35929420692444 36.0 36.0 36.0 36.0 36.0 12 35.302931018724955 36.0 36.0 36.0 36.0 36.0 13 35.31075777759929 36.0 36.0 36.0 36.0 36.0 14 35.25623634263811 36.0 36.0 36.0 36.0 36.0 15 35.238156695811604 36.0 36.0 36.0 36.0 36.0 16 35.28237816040701 36.0 36.0 36.0 36.0 36.0 17 35.270873434163555 36.0 36.0 36.0 36.0 36.0 18 35.26230443488641 36.0 36.0 36.0 36.0 36.0 19 35.25267746607989 36.0 36.0 36.0 36.0 36.0 20 35.25227865034107 36.0 36.0 36.0 36.0 36.0 21 35.23892940130557 36.0 36.0 36.0 36.0 36.0 22 35.21553498084854 36.0 36.0 36.0 36.0 36.0 23 35.17173725797562 36.0 36.0 36.0 36.0 36.0 24 35.1907557835206 36.0 36.0 36.0 36.0 36.0 25 35.1454486538584 36.0 36.0 36.0 36.0 36.0 26 35.127125286302615 36.0 36.0 36.0 36.0 36.0 27 35.11221954806422 36.0 36.0 36.0 36.0 36.0 28 35.083507584422925 36.0 36.0 36.0 36.0 36.0 29 35.04863890281359 36.0 36.0 36.0 36.0 36.0 30 35.06305719959343 36.0 36.0 36.0 36.0 36.0 31 35.02973669852577 36.0 36.0 36.0 36.0 36.0 32 34.98203944398439 36.0 36.0 36.0 36.0 36.0 33 34.96309569639044 36.0 36.0 36.0 36.0 36.0 34 34.937842905372655 36.0 36.0 36.0 36.0 36.0 35 34.9262190883183 36.0 36.0 36.0 36.0 36.0 36 34.913188337963106 36.0 36.0 36.0 32.0 36.0 37 34.8958703184156 36.0 36.0 36.0 32.0 36.0 38 34.89806657453285 36.0 36.0 36.0 32.0 36.0 39 34.87419856038596 36.0 36.0 36.0 32.0 36.0 40 34.894036873838516 36.0 36.0 36.0 36.0 36.0 41 34.8776854285469 36.0 36.0 36.0 36.0 36.0 42 34.85147714148819 36.0 36.0 36.0 32.0 36.0 43 34.84325433642877 36.0 36.0 36.0 32.0 36.0 44 34.817486408415014 36.0 36.0 36.0 32.0 36.0 45 34.80060597835871 36.0 36.0 36.0 32.0 36.0 46 34.78040762291972 36.0 36.0 36.0 32.0 36.0 47 34.769839005840986 36.0 36.0 36.0 32.0 36.0 48 34.73361601245191 36.0 36.0 36.0 32.0 36.0 49 34.71647801389762 36.0 36.0 36.0 32.0 36.0 50 34.34170477111023 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 3.0 21 9.0 22 29.0 23 71.0 24 189.0 25 425.0 26 950.0 27 1708.0 28 2791.0 29 4350.0 30 6245.0 31 9287.0 32 13952.0 33 22577.0 34 52114.0 35 246369.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.89210093997512 17.30878445952123 12.027138214850664 26.771976385652984 2 16.241472811320286 19.388950591467687 37.13685878172336 27.232717815488673 3 18.87118528591488 22.206281901797166 28.49289194032166 30.429640871966303 4 13.073160734266121 15.960151550400479 34.673247144582184 36.293440570751216 5 14.955867161124328 35.87846090359461 33.44651576291512 15.719156172365947 6 35.369237927481805 34.42066314378455 16.420729613258445 13.7893693154752 7 31.51973722474098 29.812030387543654 19.49599661006622 19.172235777649146 8 28.29237624941493 33.91180079153846 18.40423852504646 19.39158443400015 9 27.395594747818286 14.731256352663896 18.034226145141233 39.83892275437659 10 17.15350805524706 26.62538185222215 30.729029631455486 25.492080461075307 11 36.723174794845306 21.304792158839447 22.10076190423437 19.871271142080875 12 24.856190921956745 23.2371098044972 28.44082432997571 23.46587494357034 13 29.809814744550213 19.493504011698594 24.53049140192041 26.166189841830782 14 23.308841246409965 19.295757874533674 24.975835643602746 32.41956523545361 15 25.304304717380887 26.687419856038595 21.745151203786534 26.263124222793984 16 25.692738466821947 25.79299686761737 23.475975372991716 25.038289292568972 17 24.65401349880494 25.736632056476736 24.822956277055077 24.786398167663247 18 24.76070989398119 25.63450651954756 25.52095450164512 24.083829084826128 19 26.002232260315893 25.187429549476693 24.62105580927745 24.18928238092996 20 25.90142050411417 24.83818882263501 24.89884204958055 24.361548623670267 21 26.311314457901396 24.567326466686424 24.31917445142064 24.802184623991536 22 26.095566221414746 24.240519125153366 24.746239638407065 24.91767501502483 23 25.10018860660982 24.751501790516496 24.860622207943635 25.287687394930053 24 25.083363798508866 24.63275615673502 24.91137403480785 25.372506009948264 25 25.26303836662799 24.54544699212616 24.939277534210913 25.25223710703494 26 25.038773859771567 25.221287956839156 25.236520544606556 24.503417638782725 27 25.450053729491394 24.569887112676835 25.06231513177573 24.917744026056035 28 25.410040380876413 24.650060100481358 24.83008458381109 25.10981493483114 29 25.088211019591988 25.05248347947467 24.880215805420615 24.979089695512734 30 25.08827952552005 24.800799847120633 25.117082884434833 24.993837742924484 31 25.60791872998992 24.48569244574429 24.786743771256383 25.119645053009403 32 25.226343033287453 25.030534499137282 24.684892277610526 25.058230189964743 33 24.94204708795272 24.898565094206372 24.945924463191247 25.21346335464967 34 25.292188728992876 24.906942736548242 24.767079885229375 25.03378864922951 35 25.616156468708194 24.77365822045094 25.084679105655706 24.525506205185156 36 25.16527311954225 24.699988090918907 24.878901262639552 25.25583752689929 37 25.382133410881696 24.79885893121737 24.805782892277016 25.01322476562392 38 25.34363238051453 24.894410763593662 24.98912950156341 24.7728273543284 39 25.724034597456978 24.817554636674082 24.512902037571973 24.945508728296964 40 25.5377780978151 24.877793441142828 24.896349451212927 24.68807900982915 41 25.211040579613815 24.821086332768346 25.052344710691614 24.91552837692623 42 25.371823917486942 25.02035684017526 24.810141306936835 24.797677935400962 43 25.42590228135724 24.60387141088526 24.95007713463525 25.020149173122245 44 25.24005638936357 24.930690381957618 24.87419023378321 24.9550629948956 45 25.2627672332376 24.898839808231852 24.6864103295565 25.15198262897405 46 25.304588421347084 24.49918434835111 24.880283387017705 25.3159438432841 47 25.093126760407348 24.641963956827954 25.2094486618827 25.055460620882 48 25.402144772117964 24.880907539937517 24.5144905058383 25.20245718210622 49 25.270318177789598 24.97562704954356 24.5815053620491 25.172549410617744 50 25.12774637394168 25.330478830798715 24.443662810503312 25.098111984756294 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1.0 1 4.0 2 7.0 3 17.0 4 27.0 5 26.5 6 26.0 7 25.5 8 25.0 9 35.5 10 46.0 11 73.0 12 100.0 13 211.5 14 323.0 15 422.5 16 522.0 17 540.5 18 559.0 19 551.0 20 543.0 21 596.0 22 649.0 23 870.5 24 1092.0 25 1357.0 26 1622.0 27 2227.5 28 2833.0 29 3440.0 30 4047.0 31 4925.5 32 5804.0 33 6535.0 34 7266.0 35 8848.5 36 10431.0 37 12094.0 38 13757.0 39 14717.0 40 15677.0 41 16842.0 42 18007.0 43 18889.5 44 19772.0 45 21498.0 46 23224.0 47 23520.0 48 23816.0 49 26110.5 50 28405.0 51 28317.0 52 28229.0 53 28334.5 54 28440.0 55 28062.0 56 27684.0 57 26262.0 58 24840.0 59 23028.0 60 21216.0 61 18400.5 62 15585.0 63 13505.5 64 11426.0 65 9521.5 66 7617.0 67 6380.5 68 5144.0 69 4421.0 70 3698.0 71 3080.5 72 2463.0 73 2231.0 74 1999.0 75 1650.5 76 1302.0 77 1158.0 78 1014.0 79 914.0 80 814.0 81 638.0 82 462.0 83 356.0 84 250.0 85 217.0 86 184.0 87 122.0 88 60.0 89 45.5 90 31.0 91 19.0 92 7.0 93 9.0 94 11.0 95 8.0 96 5.0 97 4.5 98 4.0 99 3.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.028249448166416943 2 0.004985196735250049 3 0.0 4 2.769553741805583E-4 5 0.0 6 2.769553741805583E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 5.539107483611166E-4 17 0.0 18 2.769553741805583E-4 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 2.769553741805583E-4 25 0.0 26 2.769553741805583E-4 27 2.769553741805583E-4 28 0.001938687619263908 29 8.308661225416749E-4 30 0.0 31 2.769553741805583E-4 32 5.539107483611166E-4 33 0.0 34 2.769553741805583E-4 35 0.0 36 0.0 37 0.0011078214967222332 38 0.0 39 5.539107483611166E-4 40 0.0 41 2.769553741805583E-4 42 0.003046509115986141 43 0.0033234644901666997 44 0.0022156429934444663 45 0.0022156429934444663 46 0.0022156429934444663 47 5.539107483611166E-4 48 0.0013847768709027914 49 0.003600419864347258 50 5.539107483611166E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 361069.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.170602977062394 #Duplication Level Percentage of deduplicated Percentage of total 1 61.10921691147864 28.825586091705457 2 17.535586649214785 16.54328391599973 3 8.184401694724505 11.58189488839939 4 4.414126778334051 8.3286808700486 5 2.703364983563337 6.3759678170879495 6 1.6344840631918025 4.6259759290293765 7 1.1694598876874283 3.8614889641792556 8 0.7815377179392213 2.94924843236083 9 0.5686385780322071 2.414072214161869 >10 1.859641062714925 12.999131727357613 >50 0.03127923395993412 1.0066536869447775 >100 0.008262439159227827 0.48801546272516216 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 2.769553741805583E-4 0.0 14 0.0 0.0 0.0 2.769553741805583E-4 0.0 15 0.0 0.0 0.0 2.769553741805583E-4 0.0 16 0.0 0.0 0.0 5.539107483611166E-4 0.0 17 0.0 0.0 0.0 8.308661225416748E-4 0.0 18 0.0 0.0 0.0 8.308661225416748E-4 0.0 19 0.0 0.0 0.0 8.308661225416748E-4 0.0 20 0.0 0.0 0.0 0.0013847768709027914 0.0 21 0.0 0.0 0.0 0.001938687619263908 0.0 22 0.0 0.0 0.0 0.0024925983676250246 0.0 23 0.0 0.0 0.0 0.0033234644901666993 0.0 24 0.0 0.0 0.0 0.004154330612708374 0.0 25 0.0 0.0 0.0 0.005539107483611166 0.0 26 0.0 0.0 0.0 0.0066469289803333985 0.0 27 0.0 0.0 0.0 0.007200839728694516 0.0 28 0.0 0.0 0.0 0.009416482722138981 0.0 29 0.0 0.0 0.0 0.01135517034140289 0.0 30 0.0 0.0 0.0 0.015509500954111265 0.0 31 0.0 0.0 0.0 0.024372072927889128 0.0 32 0.0 0.0 0.0 0.03268073415330588 0.0 33 0.0 0.0 0.0 0.04015852925618095 0.0 34 0.0 0.0 0.0 0.04708241361069491 0.0 35 0.0 0.0 0.0 0.05982236082300059 0.0 36 0.0 0.0 0.0 0.0736701295320285 0.0 37 0.0 0.0 0.0 0.09804220245991763 0.0 38 0.0 0.0 0.0 0.13183075810994574 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGTTTG 35 3.2137838E-4 31.427977 7 GTTTAAT 30 0.0057247505 29.349037 1 ATATAAG 45 4.0469276E-5 29.349035 1 GTATCAA 320 0.0 26.826855 1 GGTATCA 155 0.0 25.562063 1 TAGGACG 65 1.8090905E-5 23.69186 4 ATACACC 65 1.8090905E-5 23.69186 3 TCTAGGC 75 2.0579373E-6 23.466223 3 TATAAGG 50 0.002573107 22.005678 2 AGTAGTG 75 5.459815E-5 20.532946 5 TATACTG 75 5.459815E-5 20.532946 5 CCCTATA 55 0.0044637783 20.010706 1 CCCCTAG 55 0.004478119 19.99962 36 GCCGGCC 80 8.967644E-5 19.249636 8 TCTAGAT 70 8.094197E-4 18.862011 2 CTCGTAA 60 0.00737947 18.34315 1 GAACAAT 60 0.0074030985 18.332987 6 CTACAGT 145 6.2645995E-9 18.206553 4 GTTGTGC 85 1.4275228E-4 18.117304 8 GGCAGTT 110 2.7859223E-6 17.999659 7 >>END_MODULE