##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062087_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1543150 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.2488967371934 32.0 32.0 32.0 32.0 32.0 2 31.399386320189222 32.0 32.0 32.0 32.0 32.0 3 31.549441726338983 32.0 32.0 32.0 32.0 32.0 4 31.63307714739332 32.0 32.0 32.0 32.0 32.0 5 31.607184006739462 32.0 32.0 32.0 32.0 32.0 6 35.24027217056022 36.0 36.0 36.0 36.0 36.0 7 35.25063733272851 36.0 36.0 36.0 36.0 36.0 8 35.19160483426757 36.0 36.0 36.0 36.0 36.0 9 35.28834915594725 36.0 36.0 36.0 36.0 36.0 10 35.16103878430483 36.0 36.0 36.0 36.0 36.0 11 35.286157534912356 36.0 36.0 36.0 36.0 36.0 12 35.21131257492791 36.0 36.0 36.0 36.0 36.0 13 35.24863299096005 36.0 36.0 36.0 36.0 36.0 14 35.20943913423841 36.0 36.0 36.0 36.0 36.0 15 35.185743446845734 36.0 36.0 36.0 36.0 36.0 16 35.195419110261476 36.0 36.0 36.0 36.0 36.0 17 35.17271101318731 36.0 36.0 36.0 36.0 36.0 18 35.17482875935586 36.0 36.0 36.0 36.0 36.0 19 35.16367235848751 36.0 36.0 36.0 36.0 36.0 20 35.166352590480514 36.0 36.0 36.0 36.0 36.0 21 35.156807828143734 36.0 36.0 36.0 36.0 36.0 22 35.14017367073843 36.0 36.0 36.0 36.0 36.0 23 35.11082137186923 36.0 36.0 36.0 36.0 36.0 24 35.08938794025208 36.0 36.0 36.0 36.0 36.0 25 35.07660953244986 36.0 36.0 36.0 36.0 36.0 26 35.030880342157275 36.0 36.0 36.0 36.0 36.0 27 35.01955804685222 36.0 36.0 36.0 36.0 36.0 28 34.99759647474322 36.0 36.0 36.0 36.0 36.0 29 34.97749473479571 36.0 36.0 36.0 36.0 36.0 30 34.96135242847423 36.0 36.0 36.0 36.0 36.0 31 34.96475715257752 36.0 36.0 36.0 36.0 36.0 32 34.93630301655704 36.0 36.0 36.0 36.0 36.0 33 34.91715776172116 36.0 36.0 36.0 32.0 36.0 34 34.90808281761333 36.0 36.0 36.0 32.0 36.0 35 34.89468036159803 36.0 36.0 36.0 32.0 36.0 36 34.86959336422253 36.0 36.0 36.0 32.0 36.0 37 34.864897126008486 36.0 36.0 36.0 32.0 36.0 38 34.84545896380779 36.0 36.0 36.0 32.0 36.0 39 34.82782425558111 36.0 36.0 36.0 32.0 36.0 40 34.81319055179341 36.0 36.0 36.0 32.0 36.0 41 34.784238084437675 36.0 36.0 36.0 32.0 36.0 42 34.76414152869131 36.0 36.0 36.0 32.0 36.0 43 34.752110293879404 36.0 36.0 36.0 32.0 36.0 44 34.71469980235233 36.0 36.0 36.0 32.0 36.0 45 34.69849334154165 36.0 36.0 36.0 32.0 36.0 46 34.68362310857661 36.0 36.0 36.0 32.0 36.0 47 34.656284871853025 36.0 36.0 36.0 32.0 36.0 48 34.63077212195833 36.0 36.0 36.0 32.0 36.0 49 34.614854680361596 36.0 36.0 36.0 32.0 36.0 50 34.189265463499986 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 13.0 21 40.0 22 108.0 23 294.0 24 677.0 25 1683.0 26 3577.0 27 6798.0 28 11880.0 29 19061.0 30 29027.0 31 43263.0 32 65780.0 33 113966.0 34 260605.0 35 986376.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.160274020554134 17.831884967374492 12.141706068357342 25.86613494371403 2 16.324028320075172 19.576754208317805 37.04201027169775 27.05720719990927 3 18.866547775191428 22.986902064875345 28.359051391185787 29.78749876874744 4 12.8915529922561 15.853157502511097 34.854745164112366 36.40054434112044 5 14.905291125295662 36.481158668956354 32.96452062340019 15.649029582347795 6 35.59213736604484 34.39050200661376 16.170073233463825 13.847287393877576 7 31.139357807082913 29.968376373003274 19.720636360690794 19.17162945922302 8 28.4884813530765 33.425784920454916 18.482195509185757 19.603538217282832 9 26.996014645368238 14.596636749505882 18.35213686291028 40.0552117422156 10 16.825411431696764 26.665815592541996 30.573995494923366 25.934777480837873 11 37.37361889641318 21.255224702718465 21.48708809901824 19.88406830185011 12 24.586786767326572 23.405890548553284 28.300878074069274 23.70644461005087 13 29.758740239121277 19.16890775362084 24.90827204095519 26.164079966302694 14 23.713119269027636 19.24530991802482 24.801542299841234 32.2400285131063 15 25.37284126624113 26.863039885947575 21.721478793377184 26.042640054434113 16 26.057823470898718 25.765044762481814 23.186997981395137 24.99013378522433 17 24.5493957165538 26.013932540582573 24.528140491851083 24.90853125101254 18 25.08229929987273 25.04387135906601 25.565921091172072 24.307908249889188 19 25.814146388879887 25.081748371836827 24.810809059391502 24.29329617989178 20 25.91410782143468 24.40504580259522 24.692770084969386 24.98807629100071 21 26.652319380694927 24.18891500431909 24.372241436180175 24.786524178805806 22 26.14625927485986 24.15669247966821 24.690146777694974 25.00690146777695 23 24.731636413593243 24.256244860347252 25.344603793930464 25.667514932129045 24 25.021255472636174 24.751673868470096 25.04613992840535 25.18093073048838 25 25.293377753383183 24.26483024624355 25.02846455976002 25.413327440613244 26 24.864885882032738 25.142890470080488 25.329522920797853 24.662700727088925 27 25.494558191226357 24.74440185465397 24.71400937695421 25.047030577165465 28 25.122753674185795 24.538292601211435 25.1844464274258 25.154507297176977 29 24.933058568892 24.82561530386096 25.220978005884103 25.020348121362936 30 25.024592872927105 24.872499400568973 25.178824855974547 24.92408287052938 31 25.422497561797496 24.67901590582868 24.632033930706445 25.26645260166737 32 25.226016873420832 24.701565706738933 24.463349657224214 25.60906776261602 33 24.873521446757827 24.50077665964422 25.05133989179255 25.5743620018054 34 25.550436123747684 24.599841880840366 25.12662493357699 24.72309706183496 35 25.764492948500695 24.40908092359315 25.14303562784362 24.683390500062536 36 24.832728401469982 24.94224472166978 24.90511285689198 25.31991401996826 37 25.690869454769793 24.74610012908845 24.714670461556008 24.84835995458575 38 25.109500119560717 24.49108932449167 25.083903109809874 25.315507446137737 39 25.719084828227086 24.528656468426107 24.51854722378109 25.233711479565716 40 25.826005249003664 24.700515179988983 24.730972361727634 24.742507209279722 41 24.857481130871108 25.012037230847195 25.268399466279227 24.86208217200247 42 25.8548901459601 24.86998515319556 24.778610232824594 24.49651446801975 43 25.454023480129507 24.229339533870956 24.958460027010705 25.35817695898884 44 25.030669280495115 24.803136594138326 24.761725774832723 25.404468350533836 45 25.158266709782694 24.942988990508212 24.80255948488876 25.096184814820333 46 25.15194933877169 24.85877573450551 24.659308812770032 25.329966113952768 47 25.184495388587337 24.75769994452826 25.095390661046913 24.962414005837495 48 25.88610933617784 25.123680086890367 24.119787906634333 24.87042267029747 49 25.127099449608348 25.282697042220025 24.33174365863664 25.258459849534994 50 25.236923212512863 25.262844789374228 24.433613545579206 25.066618452533707 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 115.0 1 73.5 2 32.0 3 106.0 4 180.0 5 178.5 6 177.0 7 149.5 8 122.0 9 171.5 10 221.0 11 367.5 12 514.0 13 949.5 14 1385.0 15 1813.5 16 2242.0 17 2331.5 18 2421.0 19 2446.5 20 2472.0 21 2971.0 22 3470.0 23 4330.5 24 5191.0 25 6645.0 26 8099.0 27 10364.5 28 12630.0 29 14948.5 30 17267.0 31 19646.0 32 22025.0 33 25669.0 34 29313.0 35 33923.0 36 38533.0 37 45319.5 38 52106.0 39 57850.0 40 63594.0 41 70186.0 42 76778.0 43 81352.5 44 85927.0 45 93642.5 46 101358.0 47 107318.5 48 113279.0 49 118605.0 50 123931.0 51 121575.0 52 119219.0 53 119300.0 54 119381.0 55 118335.0 56 117289.0 57 112831.0 58 108373.0 59 99671.0 60 90969.0 61 79982.5 62 68996.0 63 59284.5 64 49573.0 65 41739.0 66 33905.0 67 28952.5 68 24000.0 69 21002.0 70 18004.0 71 14136.5 72 10269.0 73 9216.5 74 8164.0 75 6043.5 76 3923.0 77 3493.0 78 3063.0 79 2622.5 80 2182.0 81 1636.0 82 1090.0 83 885.5 84 681.0 85 554.5 86 428.0 87 282.5 88 137.0 89 90.0 90 43.0 91 32.5 92 22.0 93 20.5 94 19.0 95 18.5 96 18.0 97 17.0 98 16.0 99 10.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0318828370540777 2 0.004860188575316722 3 3.8881508602533777E-4 4 0.0 5 0.0 6 1.9440754301266888E-4 7 0.0 8 0.0 9 0.0 10 1.296050286751126E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 3.2401257168778147E-4 17 0.0 18 1.296050286751126E-4 19 0.0 20 3.8881508602533777E-4 21 6.48025143375563E-5 22 0.0 23 6.48025143375563E-5 24 0.0011664452580760134 25 1.9440754301266888E-4 26 6.480251433755629E-4 27 3.2401257168778147E-4 28 0.0012312477724135697 29 6.480251433755629E-4 30 0.0012960502867511259 31 3.2401257168778147E-4 32 8.424326863882319E-4 33 1.9440754301266888E-4 34 6.480251433755629E-4 35 1.9440754301266888E-4 36 6.48025143375563E-5 37 0.0014256553154262386 38 6.48025143375563E-5 39 5.184201147004504E-4 40 0.0 41 0.0013608528010886822 42 0.003693743317240709 43 0.003758545831578265 44 0.004860188575316722 45 0.0017496678871140202 46 0.0023976930304895833 47 0.0014256553154262386 48 0.0036289408029031526 49 0.004341768460616272 50 0.002203285487476914 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1543150.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.92819396387089 #Duplication Level Percentage of deduplicated Percentage of total 1 75.13936724589738 42.02409105651076 2 14.607878881308936 16.33984566949159 3 4.659489149760133 7.8179043882100965 4 1.9848892352103398 4.440450805745729 5 1.0270171366654979 2.871960681182363 6 0.6141362705290576 2.0608519475038456 7 0.4028195779724655 1.5770280042502065 8 0.27953450116609985 1.250708784064922 9 0.2051450064035898 1.0326050737973553 >10 0.9549444995227134 9.454766339831385 >50 0.06752445790023291 2.5867806811839698 >100 0.050853856113988564 5.7237876810922 >500 0.005120145239769288 1.9577945095067808 >1k 0.001280036309942322 0.8614243776288728 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.48025143375563E-5 2 0.0 0.0 0.0 0.0 6.48025143375563E-5 3 0.0 0.0 0.0 0.0 6.48025143375563E-5 4 0.0 0.0 0.0 0.0 6.48025143375563E-5 5 0.0 0.0 0.0 0.0 6.48025143375563E-5 6 0.0 0.0 0.0 0.0 1.296050286751126E-4 7 0.0 0.0 0.0 0.0 1.296050286751126E-4 8 0.0 0.0 0.0 0.0 1.296050286751126E-4 9 0.0 0.0 0.0 0.0 1.296050286751126E-4 10 0.0 0.0 0.0 0.0 1.296050286751126E-4 11 0.0 0.0 0.0 0.0 1.296050286751126E-4 12 0.0 0.0 0.0 0.0 5.184201147004504E-4 13 0.0 0.0 0.0 0.0 6.480251433755629E-4 14 0.0 0.0 0.0 0.0 6.480251433755629E-4 15 0.0 0.0 0.0 6.48025143375563E-5 0.0010368402294009009 16 0.0 0.0 0.0 1.296050286751126E-4 0.0010368402294009009 17 0.0 0.0 0.0 1.296050286751126E-4 0.0010368402294009009 18 0.0 0.0 0.0 1.9440754301266888E-4 0.0010368402294009009 19 0.0 0.0 0.0 1.9440754301266888E-4 0.0010368402294009009 20 0.0 0.0 0.0 3.2401257168778147E-4 0.0011664452580760134 21 0.0 0.0 0.0 4.536176003628941E-4 0.0011664452580760134 22 0.0 0.0 0.0 5.184201147004504E-4 0.0011664452580760134 23 0.0 0.0 0.0 7.128276577131193E-4 0.0011664452580760134 24 0.0 0.0 0.0 0.0010368402294009009 0.0011664452580760134 25 0.0 0.0 0.0 0.0016200628584389074 0.0011664452580760134 26 0.0 0.0 0.0 0.002138482973139358 0.0012960502867511259 27 0.0 0.0 0.0 0.0024624955448271394 0.0012960502867511259 28 0.0 0.0 0.0 0.0033697307455529276 0.0012960502867511259 29 0.0 0.0 0.0 0.00421216343194116 0.0012960502867511259 30 0.0 0.0 0.0 0.005119398632666947 0.0012960502867511259 31 0.0 0.0 0.0 0.007646696691831643 0.0012960502867511259 32 0.0 0.0 0.0 0.01069241486569679 0.0013608528010886822 33 0.0 0.0 0.0 0.013543725496549266 0.0013608528010886822 34 0.0 0.0 0.0 0.01678385121342708 0.001490457829763795 35 0.0 0.0 0.0 0.02132002721705602 0.001490457829763795 36 0.0 0.0 0.0 0.02611541327803519 0.001490457829763795 37 0.0 0.0 0.0 0.03389171499854194 0.001490457829763795 38 0.0 0.0 0.0 0.043288079577487606 0.001555260344101351 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 810 0.0 26.079645 1 GTATCAA 1705 0.0 25.295725 1 TATACTG 225 0.0 19.554663 5 GTATTAG 170 5.456968E-12 19.41591 1 TCAACGC 2420 0.0 17.726463 4 ATCAACG 2480 0.0 17.297598 3 GTATTAC 140 8.3560735E-8 17.289408 1 ACCGTCG 395 0.0 17.265034 8 CAACGCA 2540 0.0 16.888992 5 TATCAAC 2645 0.0 16.551765 2 CGTCGTA 400 0.0 16.499247 10 ATACCGT 440 0.0 16.499247 6 GTAAACG 270 0.0 16.29661 27 GTCCTAT 365 0.0 16.277449 1 AACGCAG 2660 0.0 16.209785 6 CGCTTCG 310 0.0 15.612697 32 TACCGTC 410 0.0 15.560265 7 CCGTCGT 430 0.0 15.348137 9 GTACTAG 115 8.204916E-5 15.307616 1 CTAGATA 305 0.0 15.14685 3 >>END_MODULE