##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062083_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1519139 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.261690339067062 32.0 32.0 32.0 32.0 32.0 2 31.412960894296045 32.0 32.0 32.0 32.0 32.0 3 31.558844187398257 32.0 32.0 32.0 32.0 32.0 4 31.64080245454827 32.0 32.0 32.0 32.0 32.0 5 31.607193285143754 32.0 32.0 32.0 32.0 32.0 6 35.24863294273928 36.0 36.0 36.0 36.0 36.0 7 35.25582254158441 36.0 36.0 36.0 36.0 36.0 8 35.19925102311243 36.0 36.0 36.0 36.0 36.0 9 35.2956240344037 36.0 36.0 36.0 36.0 36.0 10 35.16991203569917 36.0 36.0 36.0 36.0 36.0 11 35.29700902945682 36.0 36.0 36.0 36.0 36.0 12 35.211132095219725 36.0 36.0 36.0 36.0 36.0 13 35.25195521937097 36.0 36.0 36.0 36.0 36.0 14 35.2159157259474 36.0 36.0 36.0 36.0 36.0 15 35.18942111288039 36.0 36.0 36.0 36.0 36.0 16 35.20188211875279 36.0 36.0 36.0 36.0 36.0 17 35.18134680236634 36.0 36.0 36.0 36.0 36.0 18 35.1822222982887 36.0 36.0 36.0 36.0 36.0 19 35.17462589006009 36.0 36.0 36.0 36.0 36.0 20 35.1708954875097 36.0 36.0 36.0 36.0 36.0 21 35.16403568073758 36.0 36.0 36.0 36.0 36.0 22 35.141201693854214 36.0 36.0 36.0 36.0 36.0 23 35.116875414297176 36.0 36.0 36.0 36.0 36.0 24 35.10152922148664 36.0 36.0 36.0 36.0 36.0 25 35.0789644660561 36.0 36.0 36.0 36.0 36.0 26 35.034615002313814 36.0 36.0 36.0 36.0 36.0 27 35.02390630482135 36.0 36.0 36.0 36.0 36.0 28 35.00185894773289 36.0 36.0 36.0 36.0 36.0 29 34.97787365079825 36.0 36.0 36.0 36.0 36.0 30 34.95604878816224 36.0 36.0 36.0 36.0 36.0 31 34.959202548285575 36.0 36.0 36.0 36.0 36.0 32 34.9378430808504 36.0 36.0 36.0 36.0 36.0 33 34.91249714476424 36.0 36.0 36.0 32.0 36.0 34 34.90638776306842 36.0 36.0 36.0 32.0 36.0 35 34.890037712151425 36.0 36.0 36.0 32.0 36.0 36 34.86808317079609 36.0 36.0 36.0 32.0 36.0 37 34.85889375494935 36.0 36.0 36.0 32.0 36.0 38 34.83390525817585 36.0 36.0 36.0 32.0 36.0 39 34.81445147547394 36.0 36.0 36.0 32.0 36.0 40 34.807513334856125 36.0 36.0 36.0 32.0 36.0 41 34.78265846640762 36.0 36.0 36.0 32.0 36.0 42 34.751512534402714 36.0 36.0 36.0 32.0 36.0 43 34.7523649909587 36.0 36.0 36.0 32.0 36.0 44 34.69958048605164 36.0 36.0 36.0 32.0 36.0 45 34.682912491878625 36.0 36.0 36.0 32.0 36.0 46 34.659436694074735 36.0 36.0 36.0 32.0 36.0 47 34.63667248355812 36.0 36.0 36.0 32.0 36.0 48 34.61150362145926 36.0 36.0 36.0 32.0 36.0 49 34.59990428788939 36.0 36.0 36.0 32.0 36.0 50 34.18543069462373 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 4.0 20 12.0 21 37.0 22 96.0 23 258.0 24 646.0 25 1557.0 26 3308.0 27 6415.0 28 11272.0 29 18670.0 30 28299.0 31 42873.0 32 65989.0 33 113405.0 34 259014.0 35 967284.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.91384053743318 18.034525946480567 12.167972891284622 25.883660624801628 2 16.068691938235975 19.815584778075035 37.50743875208022 26.608284531608774 3 18.890157885902177 23.192013876317773 28.40221573461213 29.515612503167922 4 12.622092265482134 15.975375509005765 35.32516466575124 36.077367559760866 5 14.641526971216571 36.78849452781775 33.01319564121232 15.55678285975336 6 35.154781754664974 34.93650021492438 16.28791045454037 13.620807575870279 7 30.778881985124467 30.092769654389755 19.906341684335665 19.22200667615011 8 28.07596934842697 33.788020714365175 18.69249621002423 19.44351372718362 9 26.885360720776703 14.462731850080868 18.596652445892047 40.055254983250386 10 16.685833225267736 26.838162933082486 30.618988782461642 25.857015059188132 11 37.457204376952994 21.243809815954958 21.712496354843104 19.58648945224894 12 24.380191674362912 23.58105479485419 28.636220911977112 23.402532618805786 13 29.633101381769546 19.238660846703297 25.152932022678637 25.975305748848527 14 23.40088694977879 19.59557354527795 24.957229061988404 32.046310442954855 15 25.214348390766084 27.402759062863897 21.838422948788754 25.54446959758126 16 25.882872587767224 25.902554880023594 23.55384522214001 24.660727310069174 17 24.147033286618274 26.312733726143563 24.82913018492712 24.711102802311046 18 24.80243717321084 25.21444741323528 25.956052679909714 24.027062733644165 19 25.66486674359621 25.01904039064233 25.05122967681035 24.26486318895111 20 25.88079787563177 24.595394481329492 24.73619838671243 24.787609256326302 21 26.65788098250455 24.440439249100475 24.38698788391838 24.51469188447659 22 25.952332209231677 24.458986307375426 24.959664652148355 24.62901683124454 23 24.530358663926517 24.428129636675536 25.49300985163955 25.5485018477584 24 24.738089705468997 24.890084897444385 25.384052814544145 24.987772582542473 25 24.958166955647098 24.520022591818762 25.296451794245932 25.22535865828821 26 24.525401760353148 25.516365649481575 25.5710022927642 24.38723029740107 27 25.073496014166004 24.822694568601765 25.114045539223106 24.989763878009125 28 24.67084237100135 24.933299541506347 25.422929948884377 24.97292813860793 29 24.630315206315185 24.996576992651068 25.38778723639552 24.98532056463823 30 24.577221782639665 25.105949636565427 25.59662909662054 24.72019948417437 31 25.16453496409129 24.798338522707077 24.820917235522963 25.21620927767867 32 25.18821764456899 24.88442314262411 24.649155201139607 25.278204011667288 33 24.64035336014693 24.63587711387439 25.324165805428105 25.39960372055058 34 25.23497063443059 24.901686891014965 25.36576952800492 24.49757294654953 35 25.507558911853728 24.66207720977873 25.55396693115946 24.27639694720808 36 24.40156773323784 25.35013323362754 25.071553830598447 25.17674520253618 37 25.46336280669233 25.017773541384702 24.906129370316343 24.612734281606624 38 24.798915701591493 24.72630878412048 25.311837823925266 25.162937690362764 39 25.566195410402393 24.550285656734015 24.79088373550405 25.09263519735954 40 25.692135934984183 24.81117581154576 25.049600497124025 24.447087756346033 41 24.53792387971473 25.194158204541832 25.67160504554605 24.59631287019739 42 25.8041284551636 25.303163059957196 25.021279509067078 23.871428975812126 43 25.184340124563303 24.418936096959516 25.319554700352253 25.07716907812493 44 24.550334907756366 25.23134144133766 24.991326958840084 25.226996692065896 45 24.808028411465962 25.282979122575465 24.979905931453057 24.929086534505515 46 24.66807758515705 25.05922895389061 24.93066641213083 25.342027048821507 47 24.980366935879367 24.970492804720624 25.258422469309554 24.79071779009045 48 25.68917075688315 25.314204988308653 24.322876071706936 24.673748183101264 49 24.9508415362851 25.441274150514758 24.6168865494412 24.990997763758937 50 25.023763945683914 25.627144350500426 24.524589430112933 24.824502273702727 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 143.0 1 92.0 2 41.0 3 100.5 4 160.0 5 164.5 6 169.0 7 152.5 8 136.0 9 175.5 10 215.0 11 370.0 12 525.0 13 1009.0 14 1493.0 15 1882.5 16 2272.0 17 2418.5 18 2565.0 19 2565.0 20 2565.0 21 3075.0 22 3585.0 23 4638.5 24 5692.0 25 7389.5 26 9087.0 27 12058.0 28 15029.0 29 17560.0 30 20091.0 31 22513.5 32 24936.0 33 28664.5 34 32393.0 35 37767.0 36 43141.0 37 49901.5 38 56662.0 39 61921.0 40 67180.0 41 71699.0 42 76218.0 43 79636.0 44 83054.0 45 90780.5 46 98507.0 47 104879.0 48 111251.0 49 115286.0 50 119321.0 51 116064.5 52 112808.0 53 112215.5 54 111623.0 55 112443.5 56 113264.0 57 108838.0 58 104412.0 59 96167.0 60 87922.0 61 76516.0 62 65110.0 63 56086.5 64 47063.0 65 39601.0 66 32139.0 67 27573.5 68 23008.0 69 20539.5 70 18071.0 71 13865.0 72 9659.0 73 8535.5 74 7412.0 75 5302.5 76 3193.0 77 2872.0 78 2551.0 79 2200.0 80 1849.0 81 1489.0 82 1129.0 83 960.0 84 791.0 85 615.5 86 440.0 87 294.0 88 148.0 89 96.5 90 45.0 91 32.0 92 19.0 93 15.5 94 12.0 95 16.5 96 21.0 97 16.0 98 11.0 99 9.5 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03376912843393527 2 0.004410392992346322 3 2.633070443191834E-4 4 6.582676107979585E-5 5 6.582676107979585E-5 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 4.6078732755857097E-4 17 0.0 18 1.316535221595917E-4 19 0.0 20 3.291338053989793E-4 21 6.582676107979585E-5 22 0.0 23 6.582676107979585E-5 24 7.899211329575502E-4 25 3.291338053989793E-4 26 7.899211329575502E-4 27 5.924408497181627E-4 28 0.002238109876713059 29 4.6078732755857097E-4 30 0.0013823619826757129 31 5.924408497181627E-4 32 0.0013165352215959172 33 5.924408497181627E-4 34 8.557478940373461E-4 35 3.291338053989793E-4 36 1.9748028323938755E-4 37 0.0017773225491544882 38 0.0 39 5.266140886383668E-4 40 6.582676107979585E-5 41 0.0011190549383565296 42 0.004739526797745301 43 0.004739526797745301 44 0.004212912709106935 45 0.002238109876713059 46 0.002238109876713059 47 0.0011848816994363253 48 0.004410392992346322 49 0.004739526797745301 50 0.0020406295934736716 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1519139.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.72704072377188 #Duplication Level Percentage of deduplicated Percentage of total 1 75.00299396650298 40.29688911243123 2 14.738796240851551 15.837438117032146 3 4.614657546665461 7.437956818078694 4 1.9542666822732004 4.1998786249441125 5 1.0131851582732827 2.7217720129634957 6 0.6100423150723023 1.96654609830682 7 0.4063062535384846 1.5280742841129744 8 0.2793726192550187 1.2007891273456965 9 0.1948689703282111 0.9422759794160964 >10 1.0353179072820502 9.82406166883973 >50 0.07888911576127602 2.895594466441921 >100 0.06206717364924376 6.957667896487033 >500 0.007019398415743452 2.626423193716012 >1k 0.002216652131287406 1.564632599884025 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1761 0.1159209262615205 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1656 0.10900911634814195 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 1639 0.10789006140978542 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1558 0.10255809376232194 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.9748028323938758E-4 2 0.0 0.0 0.0 0.0 1.9748028323938758E-4 3 0.0 0.0 0.0 0.0 1.9748028323938758E-4 4 0.0 0.0 0.0 0.0 1.9748028323938758E-4 5 0.0 0.0 0.0 0.0 1.9748028323938758E-4 6 0.0 0.0 0.0 0.0 4.60787327558571E-4 7 0.0 0.0 0.0 0.0 4.60787327558571E-4 8 0.0 0.0 0.0 6.582676107979585E-5 5.266140886383668E-4 9 0.0 0.0 0.0 6.582676107979585E-5 5.266140886383668E-4 10 0.0 0.0 0.0 6.582676107979585E-5 5.266140886383668E-4 11 0.0 0.0 0.0 6.582676107979585E-5 5.266140886383668E-4 12 0.0 0.0 0.0 6.582676107979585E-5 0.0011848816994363255 13 0.0 0.0 0.0 6.582676107979585E-5 0.001382361982675713 14 0.0 0.0 0.0 6.582676107979585E-5 0.001382361982675713 15 0.0 0.0 0.0 6.582676107979585E-5 0.0014481887437555088 16 0.0 0.0 0.0 6.582676107979585E-5 0.0015140155048353047 17 0.0 0.0 0.0 1.316535221595917E-4 0.0015140155048353047 18 0.0 0.0 0.0 2.633070443191834E-4 0.0016456690269948965 19 0.0 0.0 0.0 2.633070443191834E-4 0.0016456690269948965 20 0.0 0.0 0.0 2.633070443191834E-4 0.0019089760713140798 21 0.0 0.0 0.0 2.633070443191834E-4 0.0020406295934736716 22 0.0 0.0 0.0 3.9496056647877516E-4 0.0021722831156332635 23 0.0 0.0 0.0 4.60787327558571E-4 0.0021722831156332635 24 0.0 0.0 0.0 4.60787327558571E-4 0.0021722831156332635 25 0.0 0.0 0.0 7.240943718777544E-4 0.0021722831156332635 26 0.0 0.0 0.0 8.557478940373461E-4 0.002238109876713059 27 0.0 0.0 0.0 0.0010532281772767337 0.002238109876713059 28 0.0 0.0 0.0 0.0011190549383565296 0.002238109876713059 29 0.0 0.0 0.0 0.0011848816994363255 0.002238109876713059 30 0.0 0.0 0.0 0.0021722831156332635 0.002238109876713059 31 0.0 0.0 0.0 0.0034229915761493845 0.0025014169210322425 32 0.0 0.0 0.0 0.005002833842064485 0.0025014169210322425 33 0.0 0.0 0.0 0.006385195824740199 0.0025672436821120386 34 0.0 0.0 0.0 0.008228345134974483 0.0029622042485908137 35 0.0 0.0 0.0 0.009808187400889583 0.0030280310096706094 36 0.0 0.0 0.0 0.013297005738118763 0.0030280310096706094 37 0.0 0.0 0.0 0.017970705774784268 0.0030280310096706094 38 0.0 0.0 0.0 0.023302673422247733 0.0031596845318302012 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1880 0.0 25.167423 1 GGTATCA 915 0.0 24.051222 1 TAGGACG 405 0.0 22.270489 4 GATATAC 390 0.0 20.878307 1 CGCAATA 315 0.0 20.254286 36 TATACAC 515 0.0 18.795174 3 ATACGAA 345 0.0 18.494871 40 GTAGGAC 430 0.0 18.417683 3 CGAATGC 375 0.0 18.18875 43 CCTATAC 85 1.4316881E-4 18.11674 3 AGGACGT 505 0.0 17.86049 5 TACGAAT 370 0.0 17.83988 41 CGAGCCG 520 0.0 17.768341 15 CAATACG 365 0.0 17.480877 38 CGGACCA 635 0.0 17.321966 9 GCGAAAG 610 0.0 17.310608 18 GGTATAG 140 8.346433E-8 17.291107 1 GGCGTTA 510 0.0 17.257446 42 TCAACGC 2695 0.0 17.141998 4 ATCAACG 2715 0.0 17.096748 3 >>END_MODULE