##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062080_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1767735 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.27808014210275 32.0 32.0 32.0 32.0 32.0 2 31.418304214149746 32.0 32.0 32.0 32.0 32.0 3 31.56381640913372 32.0 32.0 32.0 32.0 32.0 4 31.644183093054107 32.0 32.0 32.0 32.0 32.0 5 31.615037321770515 32.0 32.0 32.0 32.0 32.0 6 35.25579399627207 36.0 36.0 36.0 36.0 36.0 7 35.26717522705609 36.0 36.0 36.0 36.0 36.0 8 35.212195266824494 36.0 36.0 36.0 36.0 36.0 9 35.3018614215366 36.0 36.0 36.0 36.0 36.0 10 35.16952993519956 36.0 36.0 36.0 36.0 36.0 11 35.301492022277095 36.0 36.0 36.0 36.0 36.0 12 35.21746245902242 36.0 36.0 36.0 36.0 36.0 13 35.2614803689467 36.0 36.0 36.0 36.0 36.0 14 35.2213815984862 36.0 36.0 36.0 36.0 36.0 15 35.19263916820112 36.0 36.0 36.0 36.0 36.0 16 35.20568241280509 36.0 36.0 36.0 36.0 36.0 17 35.1843788803186 36.0 36.0 36.0 36.0 36.0 18 35.1829974515411 36.0 36.0 36.0 36.0 36.0 19 35.17130395675822 36.0 36.0 36.0 36.0 36.0 20 35.17829142942805 36.0 36.0 36.0 36.0 36.0 21 35.16292261000659 36.0 36.0 36.0 36.0 36.0 22 35.1497899854899 36.0 36.0 36.0 36.0 36.0 23 35.11692589669832 36.0 36.0 36.0 36.0 36.0 24 35.100731727323385 36.0 36.0 36.0 36.0 36.0 25 35.07748503027886 36.0 36.0 36.0 36.0 36.0 26 35.04201421593169 36.0 36.0 36.0 36.0 36.0 27 35.02495905777732 36.0 36.0 36.0 36.0 36.0 28 35.00214794638337 36.0 36.0 36.0 36.0 36.0 29 34.9796247740753 36.0 36.0 36.0 36.0 36.0 30 34.959857105278786 36.0 36.0 36.0 36.0 36.0 31 34.96663809903634 36.0 36.0 36.0 36.0 36.0 32 34.938155888750295 36.0 36.0 36.0 36.0 36.0 33 34.91971647334018 36.0 36.0 36.0 32.0 36.0 34 34.90783856177538 36.0 36.0 36.0 32.0 36.0 35 34.89295963478689 36.0 36.0 36.0 32.0 36.0 36 34.868964522397306 36.0 36.0 36.0 32.0 36.0 37 34.854480450972574 36.0 36.0 36.0 32.0 36.0 38 34.83199518027306 36.0 36.0 36.0 32.0 36.0 39 34.81970035101415 36.0 36.0 36.0 32.0 36.0 40 34.80754920845036 36.0 36.0 36.0 32.0 36.0 41 34.77986236624834 36.0 36.0 36.0 32.0 36.0 42 34.73956051104945 36.0 36.0 36.0 32.0 36.0 43 34.74471173563911 36.0 36.0 36.0 32.0 36.0 44 34.690169058145024 36.0 36.0 36.0 32.0 36.0 45 34.67967653522728 36.0 36.0 36.0 32.0 36.0 46 34.6536324731931 36.0 36.0 36.0 32.0 36.0 47 34.63652527103893 36.0 36.0 36.0 32.0 36.0 48 34.609750330224834 36.0 36.0 36.0 32.0 36.0 49 34.59117345077175 36.0 36.0 36.0 32.0 36.0 50 34.17088138210761 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 13.0 21 37.0 22 116.0 23 305.0 24 805.0 25 1947.0 26 4051.0 27 7504.0 28 13305.0 29 21301.0 30 32750.0 31 49453.0 32 75890.0 33 130714.0 34 302243.0 35 1127299.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.90017966528499 17.86489736443759 12.1912091332211 26.04371383705632 2 16.142859729039234 19.70818652709042 37.240642304184796 26.908311439685544 3 18.62516490056185 23.468432997762104 28.2745348276775 29.631867273998548 4 12.377816810777635 15.916865367263759 35.74885375918902 35.95646406276959 5 14.671656102300402 36.73695435118952 33.09048019075257 15.500909355757509 6 35.094895713711935 35.3258133312214 16.269962041714514 13.309328913352154 7 30.883305472822563 30.06802490192252 20.179042673251363 18.86962695200355 8 28.223743943520947 33.18053893824583 18.85107213468082 19.744644983552398 9 27.01971732188365 14.194378682325123 18.517594548956716 40.26830944683451 10 16.23038307799703 26.431352228332994 30.85311477858094 26.485149915089035 11 37.70333223022681 21.05304245263006 21.973881831835655 19.26974348530747 12 24.881670612393826 23.375675652742068 28.422359686265192 23.320294048598914 13 29.14594099228674 19.322749167720275 25.217976676368348 26.313333163624637 14 23.64455079522666 19.789561218169013 24.66608400014708 31.899803986457247 15 25.128540194090178 27.4343156638297 21.823519928043513 25.613624214036605 16 25.97029971256874 25.855406406079673 23.566138889093168 24.60815499225842 17 24.182301080195845 26.2451668377896 24.728140812961218 24.844391269053336 18 24.95912846616063 24.989732618142774 26.046226411892288 24.004912503804306 19 25.67415364859552 24.860061038560644 25.240038806721593 24.225746506122242 20 25.931603846965405 24.336677922149917 24.592486073955822 25.139232156928852 21 26.876935739802626 24.2356461799987 24.309016905814502 24.578401174384172 22 26.049040155905722 24.38063397511505 25.062693220420478 24.50763264855875 23 24.272344450403118 24.366250087682975 25.685624291464997 25.675781170448914 24 24.792175679505625 24.951250736118126 25.502695847020934 24.753877737355314 25 24.863864956752447 24.4458146888948 25.252046409802404 25.438273944550353 26 24.512580831111556 25.621121789595573 25.61178777968795 24.25450959960492 27 25.239869640799423 24.935411553002126 24.89021236828454 24.934506437913914 28 24.717473933834285 24.7321256335163 25.555053337278167 24.99534709537125 29 24.61925746578946 24.957261572751495 25.539364043151387 24.88411691830766 30 24.536943276894966 24.956299392999984 25.818318615610025 24.688438714495025 31 25.28670999537825 24.789970397012663 24.65691817797658 25.266401429632516 32 25.090313974708696 24.786816026501903 24.60285044820396 25.52001955058544 33 24.495765756082662 24.65297302189814 25.310652644917493 25.540608577101708 34 25.36801517882296 24.813291200106804 25.461807995130464 24.356885625939768 35 25.891665643698055 24.426340885575918 25.53131669920367 24.150676771522363 36 24.316398460627255 25.209915750851515 25.161209300273292 25.312476488247942 37 25.559864343880907 24.984824956652833 24.894085834457673 24.561224865008587 38 24.67011439503907 24.590690680837728 25.389849377791002 25.3493455463322 39 25.7671026512638 24.50316028020227 24.51453083995626 25.21520622857767 40 25.668892679049744 24.75687815198545 25.205983928586583 24.368245240378226 41 24.45962909305258 25.356263799547552 25.665418920745974 24.51868818665389 42 25.915237984787755 25.342049212091727 24.963185689515203 23.779527113605315 43 25.253285255005032 24.3780658278605 25.308329434606325 25.060319482528143 44 24.68782404890497 25.11018723485622 24.817542611105107 25.3844461051337 45 24.946257970791493 25.27991111634075 24.872320252711994 24.901510660155772 46 24.6327275154679 25.198606319083687 24.91801461000298 25.25065155544543 47 25.035950466988368 24.683686803830945 25.454231746157458 24.826130983023234 48 25.827288191877116 25.447466810886404 24.12646456669305 24.59878043054343 49 24.900688701649738 25.516073665166765 24.48200290325026 25.101234729933235 50 25.063160812576722 25.715134269761442 24.39234942383083 24.829355493831002 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 164.0 1 104.0 2 44.0 3 99.0 4 154.0 5 173.5 6 193.0 7 161.5 8 130.0 9 186.0 10 242.0 11 410.5 12 579.0 13 1095.5 14 1612.0 15 2205.5 16 2799.0 17 2925.0 18 3051.0 19 3096.0 20 3141.0 21 3827.5 22 4514.0 23 5428.5 24 6343.0 25 8362.0 26 10381.0 27 13372.0 28 16363.0 29 19219.0 30 22075.0 31 25111.0 32 28147.0 33 32612.5 34 37078.0 35 43161.0 36 49244.0 37 58091.5 38 66939.0 39 72631.5 40 78324.0 41 84514.0 42 90704.0 43 93525.5 44 96347.0 45 106197.0 46 116047.0 47 123644.5 48 131242.0 49 136106.5 50 140971.0 51 134899.5 52 128828.0 53 127766.0 54 126704.0 55 128778.0 56 130852.0 57 126816.5 58 122781.0 59 112944.0 60 103107.0 61 89693.5 62 76280.0 63 64955.5 64 53631.0 65 44866.5 66 36102.0 67 31421.0 68 26740.0 69 24244.0 70 21748.0 71 16832.0 72 11916.0 73 10572.0 74 9228.0 75 6583.0 76 3938.0 77 3620.5 78 3303.0 79 2818.0 80 2333.0 81 1855.0 82 1377.0 83 1222.5 84 1068.0 85 829.5 86 591.0 87 403.0 88 215.0 89 138.0 90 61.0 91 45.0 92 29.0 93 22.5 94 16.0 95 22.5 96 29.0 97 25.5 98 22.0 99 15.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.031678956404664727 2 0.005600386935824657 3 1.697086950249896E-4 4 0.0 5 0.0 6 2.8284782504164934E-4 7 0.0 8 0.0 9 0.0 10 5.656956500832986E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 4.525565200666389E-4 17 0.0 18 5.656956500832986E-5 19 0.0 20 2.2627826003331945E-4 21 0.0 22 0.0 23 1.697086950249896E-4 24 9.051130401332778E-4 25 2.8284782504164934E-4 26 3.394173900499792E-4 27 2.2627826003331945E-4 28 0.001244530430183257 29 2.8284782504164934E-4 30 0.0014142391252082468 31 4.525565200666389E-4 32 7.354043451082882E-4 33 2.8284782504164934E-4 34 5.091260850749688E-4 35 2.2627826003331945E-4 36 1.1313913001665973E-4 37 0.0016970869502498961 38 5.656956500832986E-5 39 6.788347800999584E-4 40 0.0 41 7.919739101166181E-4 42 0.004525565200666389 43 0.0036204521605331112 44 0.003507313030516452 45 0.001753656515258226 46 0.0023759217303498544 47 0.0014142391252082468 48 0.003507313030516452 49 0.003450743465508122 50 0.0014142391252082468 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1767735.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.791163771881976 #Duplication Level Percentage of deduplicated Percentage of total 1 70.27325492989644 33.58440635137893 2 16.36135365978856 15.638562645692714 3 5.946369368798772 8.525517370570936 4 2.7328648839817746 5.22427172947193 5 1.430335707467293 3.4178704022170034 6 0.8281071436239889 2.374572247295967 7 0.5051558359983382 1.6899389701962975 8 0.3559716756248143 1.3609840518349399 9 0.25214900594042533 1.0845444994034499 >10 1.1472194997725536 9.542401767810391 >50 0.07695012717396474 2.5755256670867617 >100 0.07407287666391424 7.552451470362595 >500 0.010836551172790079 3.5457917885744448 >1k 0.005358734096434654 3.8831610381036774 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2804 0.15862106028335696 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 2497 0.14125420382579967 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 2372 0.13418300819975845 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 2293 0.1297140125641004 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2258 0.12773407778880885 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 2230 0.1261501299685756 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 2215 0.12530158649345066 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2034 0.11506249522694297 No Hit GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA 1926 0.10895298220604333 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1850 0.10465369526541025 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 1779 0.10063725614981883 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.2627826003331948E-4 2 0.0 0.0 0.0 0.0 2.2627826003331948E-4 3 0.0 0.0 0.0 0.0 2.2627826003331948E-4 4 0.0 0.0 0.0 0.0 2.2627826003331948E-4 5 0.0 0.0 0.0 0.0 3.394173900499792E-4 6 0.0 0.0 0.0 0.0 3.394173900499792E-4 7 0.0 0.0 0.0 0.0 3.394173900499792E-4 8 0.0 0.0 0.0 0.0 3.394173900499792E-4 9 0.0 0.0 0.0 5.656956500832987E-5 3.394173900499792E-4 10 0.0 0.0 0.0 5.656956500832987E-5 3.394173900499792E-4 11 0.0 0.0 0.0 5.656956500832987E-5 3.394173900499792E-4 12 0.0 0.0 0.0 5.656956500832987E-5 7.919739101166182E-4 13 0.0 0.0 0.0 5.656956500832987E-5 0.0010182521701499376 14 0.0 0.0 0.0 1.1313913001665974E-4 0.0010182521701499376 15 0.0 0.0 0.0 1.697086950249896E-4 0.001301099995191587 16 0.0 0.0 0.0 3.394173900499792E-4 0.001301099995191587 17 0.0 0.0 0.0 3.959869550583091E-4 0.001301099995191587 18 0.0 0.0 0.0 5.091260850749688E-4 0.0014142391252082466 19 0.0 0.0 0.0 5.656956500832987E-4 0.0014142391252082466 20 0.0 0.0 0.0 7.919739101166182E-4 0.0014708086902165765 21 0.0 0.0 0.0 7.919739101166182E-4 0.0014708086902165765 22 0.0 0.0 0.0 0.0013576695601999168 0.0015273782552249066 23 0.0 0.0 0.0 0.001753656515258226 0.0015273782552249066 24 0.0 0.0 0.0 0.0023759217303498544 0.0015273782552249066 25 0.0 0.0 0.0 0.0027719086854081634 0.0015273782552249066 26 0.0 0.0 0.0 0.003563882595524782 0.0015839478202332364 27 0.0 0.0 0.0 0.004129578245608081 0.0015839478202332364 28 0.0 0.0 0.0 0.0050346912857413585 0.0015839478202332364 29 0.0 0.0 0.0 0.006562069540966265 0.0015839478202332364 30 0.0 0.0 0.0 0.00865514344627447 0.0015839478202332364 31 0.0 0.0 0.0 0.01278472169188255 0.0015839478202332364 32 0.0 0.0 0.0 0.01668802167745731 0.0015839478202332364 33 0.0 0.0 0.0 0.020591321663032073 0.0015839478202332364 34 0.0 0.0 0.0 0.02477746947364848 0.0016405173852415663 35 0.0 0.0 0.0 0.029585882499356522 0.0016405173852415663 36 0.0 0.0 0.0 0.03637423030035611 0.0016405173852415663 37 0.0 0.0 0.0 0.046047625916780514 0.0016405173852415663 38 0.0 0.0 0.0 0.05764438674348814 0.0016970869502498961 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2330 0.0 27.765816 1 GGTATCA 890 0.0 26.208061 1 ACCGTAT 45 0.0013987361 24.443644 8 TAGGACG 465 0.0 22.23583 4 CGCAATA 505 0.0 21.783312 36 ATACGAA 520 0.0 21.578657 40 TACGAAT 550 0.0 20.40164 41 CTAGCGG 565 0.0 20.247124 29 TAGCGGC 570 0.0 20.069517 30 AGGACGT 570 0.0 20.069517 5 CAATACG 560 0.0 20.037325 38 CGAATGC 550 0.0 20.001608 43 AATACGA 555 0.0 19.821413 39 TCTAGCG 585 0.0 19.554913 28 GCGAAAG 810 0.0 19.283865 18 TCAACGC 3350 0.0 19.175491 4 TCCTACA 580 0.0 18.964895 2 CGGTCCA 615 0.0 18.958727 10 AGCGAAA 825 0.0 18.932713 17 ATCAACG 3415 0.0 18.746092 3 >>END_MODULE