FastQCFastQC Report
Thu 2 Feb 2017
SRR4062070_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062070_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1800245
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA9550.028.807521
GTATCAA21600.026.1865711
TGTAGGA17000.023.683432
GTAGGAC16900.022.7802013
TAGGACG13350.022.246354
GTCCTAC15100.021.7174381
CTGTAGG17000.021.1026951
AGGACGT14850.020.5918125
TCCTACA16300.020.3812942
GGACGTG14350.020.2361666
GATATAC6000.020.174871
GTACGAT550.00448543319.9992433
GTCCTAA8600.019.9616031
TTAGGAC9100.019.3399263
TAGGACC13650.018.5340984
CCTACAG17300.018.4386083
GACGTGA8450.017.703477
TACGACG4250.017.5993335
ACTGTTC7450.017.422168
ACGACGG4350.017.1947526
Produced by FastQC (version 0.11.5)