##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062069_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1309456 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.307736953360784 32.0 32.0 32.0 32.0 32.0 2 31.476562022702556 32.0 32.0 32.0 32.0 32.0 3 31.582551074644737 32.0 32.0 32.0 32.0 32.0 4 31.66073086839115 32.0 32.0 32.0 32.0 32.0 5 31.631131553866645 32.0 32.0 32.0 32.0 32.0 6 35.27612535281827 36.0 36.0 36.0 36.0 36.0 7 35.29079862171772 36.0 36.0 36.0 36.0 36.0 8 35.24075646680759 36.0 36.0 36.0 36.0 36.0 9 35.32685787074938 36.0 36.0 36.0 36.0 36.0 10 35.214026282670055 36.0 36.0 36.0 36.0 36.0 11 35.32450880365587 36.0 36.0 36.0 36.0 36.0 12 35.25234448503806 36.0 36.0 36.0 36.0 36.0 13 35.28091589179018 36.0 36.0 36.0 36.0 36.0 14 35.25033601739959 36.0 36.0 36.0 36.0 36.0 15 35.23190469935607 36.0 36.0 36.0 36.0 36.0 16 35.24597619163989 36.0 36.0 36.0 36.0 36.0 17 35.229029459561836 36.0 36.0 36.0 36.0 36.0 18 35.224784185188355 36.0 36.0 36.0 36.0 36.0 19 35.21698399946237 36.0 36.0 36.0 36.0 36.0 20 35.21157182830122 36.0 36.0 36.0 36.0 36.0 21 35.20880350313413 36.0 36.0 36.0 36.0 36.0 22 35.18858976552095 36.0 36.0 36.0 36.0 36.0 23 35.159240936694324 36.0 36.0 36.0 36.0 36.0 24 35.14885876272284 36.0 36.0 36.0 36.0 36.0 25 35.13832003519018 36.0 36.0 36.0 36.0 36.0 26 35.08750122188145 36.0 36.0 36.0 36.0 36.0 27 35.08510786158527 36.0 36.0 36.0 36.0 36.0 28 35.06046556738065 36.0 36.0 36.0 36.0 36.0 29 35.049345682481885 36.0 36.0 36.0 36.0 36.0 30 35.02551212106401 36.0 36.0 36.0 36.0 36.0 31 35.02986354638873 36.0 36.0 36.0 36.0 36.0 32 35.0061086435894 36.0 36.0 36.0 36.0 36.0 33 34.98800876089002 36.0 36.0 36.0 36.0 36.0 34 34.980408658251974 36.0 36.0 36.0 36.0 36.0 35 34.97226176366369 36.0 36.0 36.0 36.0 36.0 36 34.94502908077858 36.0 36.0 36.0 36.0 36.0 37 34.93556637260053 36.0 36.0 36.0 36.0 36.0 38 34.93246355738566 36.0 36.0 36.0 36.0 36.0 39 34.90710188047556 36.0 36.0 36.0 36.0 36.0 40 34.89838146528024 36.0 36.0 36.0 36.0 36.0 41 34.86819259295463 36.0 36.0 36.0 32.0 36.0 42 34.859418720445746 36.0 36.0 36.0 32.0 36.0 43 34.84242082208184 36.0 36.0 36.0 32.0 36.0 44 34.80893668821251 36.0 36.0 36.0 32.0 36.0 45 34.792555839982406 36.0 36.0 36.0 32.0 36.0 46 34.769320236800624 36.0 36.0 36.0 32.0 36.0 47 34.74607546950795 36.0 36.0 36.0 32.0 36.0 48 34.72637263107733 36.0 36.0 36.0 32.0 36.0 49 34.7025612162608 36.0 36.0 36.0 32.0 36.0 50 34.29761977492944 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 4.0 20 12.0 21 32.0 22 79.0 23 235.0 24 571.0 25 1487.0 26 3009.0 27 5786.0 28 9783.0 29 15455.0 30 23089.0 31 34083.0 32 51620.0 33 86951.0 34 200193.0 35 877067.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.909269668500606 17.217204905647115 12.196357280473514 26.677168145378765 2 16.19378996591561 19.082218761765912 37.394999377576084 27.328991894742387 3 18.99952193815132 22.290359187875254 28.220006201057846 30.490112672915583 4 13.377081780525653 15.364548331520874 34.234139978739265 37.024229909214206 5 14.920875418304117 35.99523160034641 33.405297169660024 15.678595811689453 6 36.011247453133066 33.86134046914282 15.94865638450283 14.178755693221287 7 31.274361261470414 29.814747498197725 19.532920541049105 19.377970699282756 8 28.139777128822963 34.0543706699576 18.230318544494814 19.575533656724627 9 26.88925782920541 14.96041104092081 18.059407876247846 40.09092325362593 10 16.415137278381252 27.180600188169745 31.553943011449032 24.850319521999975 11 37.19903532459281 21.181238621228967 21.66808201268313 19.951644041495094 12 24.49078090443665 23.082027956647647 28.6162345279261 23.810956610989603 13 30.003528182695717 19.557205434928704 24.51162925672951 25.92763712564607 14 23.295399005388497 18.795209613763273 25.22864456690412 32.68074681394411 15 25.227499053041875 26.640757688689042 21.919331386468883 26.212411871800196 16 25.801061514376265 26.000763679407385 23.03707663522853 25.161098170987817 17 24.37004374335602 25.940161410539947 24.899500250485698 24.790294595618334 18 24.721963632087036 25.837851129977373 25.14481259703494 24.295372640900652 19 25.639425837905204 25.101874366148998 25.09805598660818 24.160643809337618 20 25.702450874450438 24.880885195398683 24.94488148086488 24.471782449285996 21 25.713598405443488 24.551359153235506 24.911508986563113 24.823533454757897 22 25.82331899659095 24.2582415904009 24.874757151061207 25.043682261946948 23 25.25178394692147 24.528659229481555 24.95532495937244 25.264231864224534 24 24.949520559871214 24.67329645254016 24.963495957062694 25.413687030525935 25 25.253980097032887 24.40393049616901 25.183339913689153 25.158749493108957 26 25.06987655904913 24.86711998607051 24.963267076609146 25.099736378271214 27 25.175588853649355 24.95396925887261 24.869430013036 25.001011874442035 28 25.412507732372102 24.57710606905295 25.016533911702037 24.993852286872915 29 25.1197642974477 24.98222532107065 24.808411489735743 25.089598891745908 30 25.497886873259745 24.920538186728006 24.750464704597558 24.83111023541469 31 25.224292984524777 24.774408758499764 24.854366114576525 25.14693214239894 32 25.097311774171004 24.99826263067499 24.833384372534752 25.07104122261925 33 25.09545978012176 24.79159220803817 24.934170935628032 25.178777076212032 34 25.17268740162832 24.70432174803562 24.958245732740615 25.164745117595444 35 25.088032941999444 24.706728687474847 25.22518944933495 24.980048921190757 36 25.24477740739468 24.54830444727005 25.21552859777541 24.991389547559862 37 25.314200399408904 24.59702085250509 25.05912855544567 25.029650192640336 38 25.293709754279643 24.743863100402 24.885677716547942 25.076749428770423 39 25.382833071645454 24.988468423335636 24.53132923185953 25.097369273159376 40 25.48554514241028 24.76203858701629 24.864294791119367 24.888121479454064 41 25.15628746813538 24.76215132200946 24.866928456767212 25.214632753087944 42 25.128723669117164 24.723956272901816 24.8508852186584 25.296434839322618 43 25.007789827401865 24.541087521001987 25.052925003818544 25.39819764777761 44 25.098250657168215 24.771384887498606 24.975752364049043 25.15461209128414 45 25.11463020494445 24.862382658687608 24.872921611573908 25.15006552479403 46 25.263264007844654 24.768467428883014 24.825057066946076 25.143211496326256 47 24.96023106078252 24.919679343596762 25.050880567937874 25.06920902768285 48 25.160797119933036 24.928708567343865 24.952536019929525 24.95795829279357 49 25.226400367800363 24.83973649120288 24.805522504097276 25.12834063689948 50 25.09929824909751 25.26440712396683 24.63627553479009 25.00001909214557 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 22.0 1 27.0 2 32.0 3 91.0 4 150.0 5 165.0 6 180.0 7 152.0 8 124.0 9 178.0 10 232.0 11 392.5 12 553.0 13 973.0 14 1393.0 15 1729.5 16 2066.0 17 2041.0 18 2016.0 19 2029.0 20 2042.0 21 2489.0 22 2936.0 23 3939.5 24 4943.0 25 6043.0 26 7143.0 27 8932.5 28 10722.0 29 12751.5 30 14781.0 31 17363.0 32 19945.0 33 23169.5 34 26394.0 35 30884.5 36 35375.0 37 39613.5 38 43852.0 39 49285.5 40 54719.0 41 59626.5 42 64534.0 43 68401.0 44 72268.0 45 78452.5 46 84637.0 47 87992.0 48 91347.0 49 94020.5 50 96694.0 51 99763.0 52 102832.0 53 103840.5 54 104849.0 55 101941.0 56 99033.0 57 95600.5 58 92168.0 59 85158.5 60 78149.0 61 69361.5 62 60574.0 63 53240.5 64 45907.0 65 38320.5 66 30734.0 67 25464.5 68 20195.0 69 16701.0 70 13207.0 71 10764.0 72 8321.0 73 7103.0 74 5885.0 75 4653.5 76 3422.0 77 2812.0 78 2202.0 79 1814.5 80 1427.0 81 1141.0 82 855.0 83 591.5 84 328.0 85 233.5 86 139.0 87 98.5 88 58.0 89 38.0 90 18.0 91 15.5 92 13.0 93 15.5 94 18.0 95 13.0 96 8.0 97 9.5 98 11.0 99 7.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.033143534414291125 2 0.004505687858164 3 1.5273518163267798E-4 4 0.0 5 1.5273518163267798E-4 6 3.0547036326535596E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 4.5820554489803397E-4 17 0.0 18 3.8183795408169505E-4 19 0.0 20 3.8183795408169505E-4 21 7.636759081633899E-5 22 0.0 23 0.0 24 9.164110897960679E-4 25 2.2910277244901698E-4 26 3.0547036326535596E-4 27 3.8183795408169505E-4 28 0.001985557361224814 29 6.87308317347051E-4 30 0.0016800869979594578 31 6.109407265307119E-4 32 3.8183795408169505E-4 33 3.0547036326535596E-4 34 6.87308317347051E-4 35 2.2910277244901698E-4 36 7.636759081633899E-5 37 0.001603719407143119 38 0.0 39 6.109407265307119E-4 40 0.0 41 7.636759081633901E-4 42 0.0047347906306130175 43 0.004276585085714984 44 0.00381837954081695 45 0.002138292542857492 46 0.002214660133673831 47 0.001298249043877763 48 0.003207438814286238 49 0.00381837954081695 50 0.001298249043877763 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1309456.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.387852273025736 #Duplication Level Percentage of deduplicated Percentage of total 1 59.04581700111348 25.028253683833096 2 17.055305195607612 14.458755142055674 3 8.321577129599502 10.582013461441598 4 4.788605184372997 8.11914756596191 5 2.9264017057810983 6.202194159808985 6 1.9205741109528194 4.884540701667951 7 1.363260606844186 4.044998244878274 8 0.9723426177237238 3.2972412191072267 9 0.7064915585229523 2.6951993833329557 >10 2.8444089602065743 18.804171997349325 >50 0.04742293018476688 1.3273067205928308 >100 0.007611769418939003 0.49403085337140107 >500 1.8122967139971703E-4 0.06214686659873184 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 7.6367590816339E-5 0.0 11 0.0 0.0 0.0 7.6367590816339E-5 0.0 12 0.0 0.0 0.0 7.6367590816339E-5 7.6367590816339E-5 13 0.0 0.0 0.0 7.6367590816339E-5 7.6367590816339E-5 14 0.0 0.0 0.0 7.6367590816339E-5 7.6367590816339E-5 15 0.0 0.0 0.0 1.52735181632678E-4 1.52735181632678E-4 16 0.0 0.0 0.0 1.52735181632678E-4 1.52735181632678E-4 17 0.0 0.0 0.0 3.05470363265356E-4 1.52735181632678E-4 18 0.0 0.0 0.0 4.5820554489803397E-4 1.52735181632678E-4 19 0.0 0.0 0.0 4.5820554489803397E-4 1.52735181632678E-4 20 0.0 0.0 0.0 9.92778680612407E-4 1.52735181632678E-4 21 0.0 0.0 0.0 0.001069146271428746 1.52735181632678E-4 22 0.0 0.0 0.0 0.001450984225510441 2.2910277244901698E-4 23 0.0 0.0 0.0 0.0018328221795921359 2.2910277244901698E-4 24 0.0 0.0 0.0 0.002672865678571865 2.2910277244901698E-4 25 0.0 0.0 0.0 0.003589276768367933 2.2910277244901698E-4 26 0.0 0.0 0.0 0.004811158221429357 4.5820554489803397E-4 27 0.0 0.0 0.0 0.00610940726530712 4.5820554489803397E-4 28 0.0 0.0 0.0 0.0076367590816339 4.5820554489803397E-4 29 0.0 0.0 0.0 0.010004154396940409 4.5820554489803397E-4 30 0.0 0.0 0.0 0.013593431165308341 4.5820554489803397E-4 31 0.0 0.0 0.0 0.019550103248982785 5.34573135714373E-4 32 0.0 0.0 0.0 0.02688139196735133 5.34573135714373E-4 33 0.0 0.0 0.0 0.033907210322454515 5.34573135714373E-4 34 0.0 0.0 0.0 0.0413148666316394 6.10940726530712E-4 35 0.0 0.0 0.0 0.05086081548368177 6.10940726530712E-4 36 0.0 0.0 0.0 0.062010483742867266 6.10940726530712E-4 37 0.0 0.0 0.0 0.07926955926735989 6.10940726530712E-4 38 0.0 0.0 0.0 0.10172163096736354 6.10940726530712E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 465 0.0 32.180115 1 TAGCCCG 30 0.0057477946 29.330608 5 GTATCAA 1135 0.0 25.980085 1 CTATAGA 145 2.9467628E-10 19.729086 1 TACCGTA 80 8.995712E-5 19.248213 7 GTATTAT 140 8.349707E-8 17.29005 1 CGTGCGG 90 2.2171198E-4 17.109524 10 CTACTAG 145 1.2458804E-7 16.693842 1 TATCAAC 1730 0.0 16.530256 2 ATCAACG 1805 0.0 16.087149 3 CCGATAG 110 5.6207762E-5 16.000347 35 TCAACGC 1815 0.0 15.998515 4 GTGTAAG 265 0.0 15.777543 1 GTATAGG 140 1.5822334E-6 15.718227 1 CAACGCA 1880 0.0 15.679395 5 AACGCAG 1895 0.0 15.671368 6 CCGTGCG 155 2.670531E-7 15.611453 9 GTCCTAA 160 3.8132384E-7 15.128795 1 ACTATAC 235 5.0931703E-11 14.977332 3 TAGGACA 280 0.0 14.927185 4 >>END_MODULE